Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C04p01780 Brassica napus HOM05D006269 ORTHO05D001487 0.0e+00 2004.6 1064 100.0
BcaC02g12510 Brassica carinata HOM05D006269 ORTHO05D001487 0.0e+00 1858.6 1077 93.3
A05p01560 Brassica napus HOM05D006269 ORTHO05D001487 0.0e+00 1616.7 1094 83.2
BraA05t19151Z Brassica rapa HOM05D006269 ORTHO05D001487 0.0e+00 1612.8 1109 82.1
BcaC02g12701 Brassica carinata HOM05D006269 ORTHO05D001487 0.0e+00 1337.0 1113 71.2
Thhalv10001302m.g Eutrema salsugineum HOM05D006269 ORTHO05D001487 1.6e-280 969.9 1095 56.2
AL4G45510 Arabidopsis lyrata HOM05D006269 ORTHO05D001487 1.2e-232 810.8 1229 46.4
AT2G46240 Arabidopsis thaliana HOM05D006269 ORTHO05D001487 8.4e-226 788.1 1229 45.7
Sp4g28290 Schrenkiella parvula HOM05D006269 ORTHO05D001487 2.6e-219 766.5 662 66.6
Carub.0004s2894 Capsella rubella HOM05D006269 ORTHO05D001487 2.9e-210 736.5 1192 45.2
Aa31LG1G27630 Aethionema arabicum HOM05D006269 ORTHO05D001487 2.3e-159 567.4 1109 40.0
COL.COLO4_06360 Corchorus olitorius HOM05D006269 ORTHO05D001487 9.4e-76 289.7 1169 28.8
vmacro13212 Vaccinium macrocarpon HOM05D006269 ORTHO05D001487 2.6e-73 281.6 1178 29.1
Rhsim10G0141000 Rhododendron simsii HOM05D006269 ORTHO05D001487 1.4e-63 249.2 1154 28.9
Cfa003851 Carpinus fangiana HOM05D006269 ORTHO05D001487 2.0e-62 245.4 1245 27.4
Haze_15599 Corylus avellana HOM05D006269 ORTHO05D001487 7.7e-62 243.4 1259 28.2
QL04p034904 Quercus lobata HOM05D006269 ORTHO05D001487 5.2e-58 230.7 1135 27.5
VMungo0331G1091 Vigna mungo HOM05D006269 ORTHO05D001487 2.0e-57 228.8 1117 27.4
Actinidia20177 Actinidia chinensis HOM05D006269 ORTHO05D001487 6.3e-56 223.8 1123 27.0
Potri.002G166300 Populus trichocarpa HOM05D006269 ORTHO05D001487 6.3e-56 223.8 1277 25.8
Sc01g0003100 Simmondsia chinensis HOM05D006269 ORTHO05D001487 7.0e-55 220.3 1176 27.5
Thecc.01G349600 Theobroma cacao HOM05D006269 ORTHO05D001487 7.7e-54 216.9 1022 28.2
Manes.01G250800 Manihot esculenta HOM05D006269 ORTHO05D001487 1.3e-53 216.1 1264 26.3
Sabra02G0145300 Salix brachista HOM05D006269 ORTHO05D001487 1.3e-53 216.1 1272 27.2
TAR374G0506 Trochodendron aralioides HOM05D006269 ORTHO05D001487 1.7e-53 215.7 1153 27.6
Cpa.g.sc184.9 Carica papaya HOM05D006269 ORTHO05D001487 6.6e-53 213.8 1134 27.2
Ciclev10018596m.g Citrus clementina HOM05D006269 ORTHO05D001487 8.6e-53 213.4 1191 25.9
Nitab4.5_0013021g0030 Nicotiana tabacum HOM05D006269 ORTHO05D001487 8.6e-53 213.4 1315 25.2
SalBow5G2113 Salvia bowleyana HOM05D006269 ORTHO05D001487 8.6e-53 213.4 1134 27.4
CANSAT56G0891 Cannabis sativa HOM05D006269 ORTHO05D001487 4.7e-51 207.6 1186 26.3
CAN.G78.145 Capsicum annuum HOM05D006269 ORTHO05D001487 3.0e-50 204.9 1265 24.7
Phvul.010G107400 Phaseolus vulgaris HOM05D006269 ORTHO05D001487 6.8e-50 203.8 1181 27.1
Glyma.16G030000 Glycine max HOM05D006269 ORTHO05D001487 4.4e-49 201.1 1204 26.4
Prupe.2G181700 Prunus persica HOM05D006269 ORTHO05D001487 7.5e-49 200.3 1285 26.8
Hund27233 Selenicereus undatus HOM05D006269 ORTHO05D001487 1.7e-48 199.1 1176 26.2
PGSC0003DMG400000079 Solanum tuberosum HOM05D006269 ORTHO05D001487 2.9e-48 198.4 1245 25.5
Glyma.07G061500 Glycine max HOM05D006269 ORTHO05D001487 1.8e-47 195.7 1212 25.2
AUR62004430 Chenopodium quinoa HOM05D006269 ORTHO05D001487 2.4e-47 195.3 1189 26.2
SGA_v2.0_scaffold11G05704 Striga asiatica HOM05D006269 ORTHO05D001487 2.7e-46 191.8 1107 26.8
Gohir.A08G126800 Gossypium hirsutum HOM05D006269 ORTHO05D001487 4.6e-46 191.0 1149 25.8
Eucgr.D02334 Eucalyptus grandis HOM05D006269 ORTHO05D001487 7.8e-46 190.3 778 29.3
Ah.05g180020 Amaranthus hybridus HOM05D006269 ORTHO05D001487 2.3e-45 188.7 1180 26.5
AUR62022637 Chenopodium quinoa HOM05D006269 ORTHO05D001487 8.6e-45 186.8 1181 26.0
Migut.N01576 Erythranthe guttata HOM05D006269 ORTHO05D001487 8.6e-45 186.8 1062 26.6
Peaxi162Scf01254g00022 Petunia axillaris HOM05D006269 ORTHO05D001487 7.3e-44 183.7 1248 24.5
FvH4_7g15690 Fragaria vesca HOM05D006269 ORTHO05D001487 9.5e-44 183.3 1210 25.5
FAN06G3724 Fragaria x ananassa HOM05D006269 ORTHO05D001487 1.8e-42 179.1 1248 25.2
Gorai.004G153900 Gossypium raimondii HOM05D006269 ORTHO05D001487 2.3e-42 178.7 1174 23.9
Lalb_Chr10g0096511 Lupinus albus HOM05D006269 ORTHO05D001487 2.3e-42 178.7 1179 26.5
FAN06G2203 Fragaria x ananassa HOM05D006269 ORTHO05D001487 3.1e-42 178.3 1250 25.2
Cc02_g38780 Coffea canephora HOM05D006269 ORTHO05D001487 2.0e-41 175.6 1217 26.3
ClCG06G003310 Citrullus lanatus HOM05D006269 ORTHO05D001487 2.6e-41 175.3 1172 25.6
Gohir.D08G148200 Gossypium hirsutum HOM05D006269 ORTHO05D001487 1.3e-40 172.9 1173 23.5
MELO3C021171.2 Cucumis melo HOM05D006269 ORTHO05D001487 3.7e-40 171.4 1154 25.6
Sopen01g039110 Solanum pennellii HOM05D006269 ORTHO05D001487 6.4e-40 170.6 1253 24.8
Actinidia10090 Actinidia chinensis HOM05D006269 ORTHO05D001487 8.3e-40 170.2 926 27.5
Psat4g157480 Pisum sativum HOM05D006269 ORTHO05D001487 2.4e-39 168.7 1056 26.0
FAN10G2074 Fragaria x ananassa HOM05D006269 ORTHO05D001487 5.4e-39 167.5 1257 25.0
Medtr8g028265 Medicago truncatula HOM05D006269 ORTHO05D001487 9.2e-39 166.8 1128 24.4
RcHm_v2.0_Chr1g0358421 Rosa chinensis HOM05D006269 ORTHO05D001487 2.7e-38 165.2 1250 24.8
Aqoxy1G02938 Aquilegia oxysepala HOM05D006269 ORTHO05D001487 4.6e-38 164.5 1100 25.0
arahy.Tifrunner.gnm1.ann1.II6FYR Arachis hypogaea HOM05D006269 ORTHO05D001487 4.6e-38 164.5 824 26.3
EL10Ac1g00334 Beta vulgaris HOM05D006269 ORTHO05D001487 4.6e-38 164.5 1255 23.7
Lj3g0001651 Lotus japonicus HOM05D006269 ORTHO05D001487 6.0e-38 164.1 1211 25.7
Sed0002830 Sechium edule HOM05D006269 ORTHO05D001487 1.3e-37 162.9 1223 25.9
FAN10G3724 Fragaria x ananassa HOM05D006269 ORTHO05D001487 3.3e-36 158.3 1263 24.7
Oeu008674.2 Olea europaea HOM05D006269 ORTHO05D001487 7.3e-36 157.1 1162 25.3
CsaV3_6G000970 Cucumis sativus L. HOM05D006269 ORTHO05D001487 9.5e-36 156.8 1134 25.2
MD01G1073600 Malus domestica HOM05D006269 ORTHO05D001487 1.2e-35 156.4 1275 25.4
FAN03G1935 Fragaria x ananassa HOM05D006269 ORTHO05D001487 2.1e-35 155.6 1231 24.9
Ca_23548_v3 Cicer arietinum L. HOM05D006269 ORTHO05D001487 2.8e-35 155.2 1094 25.2
Solyc01g095320.4 Solanum lycopersicum HOM05D006269 ORTHO05D001487 1.1e-34 153.3 995 24.4
PGR031G2857 Punica granatum HOM05D006269 ORTHO05D001487 6.8e-34 150.6 1182 24.8
arahy.Tifrunner.gnm1.ann1.YSVF0U Arachis hypogaea HOM05D006269 ORTHO05D001487 2.6e-33 148.7 1209 24.1
TPR.G21288 Trifolium pratense HOM05D006269 ORTHO05D001487 4.9e-32 144.4 1116 24.6
Lsat_1_v5_gn_3_138421 Lactuca sativa HOM05D006269 ORTHO05D001487 6.4e-32 144.1 1048 25.4
Zm00001eb237960 Zea mays HOM05D006269 ORTHO05D001487 3.5e-30 138.3 955 24.7
GSVIVG01027028001 Vitis vinifera HOM05D006269 ORTHO05D001487 3.3e-28 131.7 946 24.2
DCAR_008644 Daucus carota HOM05D001461 ORTHO05D001487 1.2e-27 129.8 704 26.3
MBI06_g04303_MAGBIO Magnolia biondii HOM05D006269 ORTHO05D001487 3.2e-23 115.2 405 28.9
Phvul.010G106600 Phaseolus vulgaris HOM05D006269 ORTHO05D001487 2.3e-21 109.0 440 28.2
HPP92_008793 Vanilla planifolia HOM05D006269 ORTHO05D001487 6.6e-21 107.5 961 24.5
Zm00001eb380100 Zea mays HOM05D006269 ORTHO05D001487 9.6e-20 103.6 143 43.4
Zm00001eb364900 Zea mays HOM05D006269 ORTHO05D001487 4.7e-19 101.3 219 36.1
Zm00001eb403850 Zea mays HOM05D006269 ORTHO05D001487 8.1e-19 100.5 177 37.3
MBI06_g04302_MAGBIO Magnolia biondii HOM05D006269 ORTHO05D001487 1.1e-18 100.1 790 24.1
ECA240G2267 Erigeron canadensis HOM05D001977 ORTHO05D002246 1.4e-18 99.8 694 25.9
SEGI_35486 Sequoiadendron giganteum HOM05D006269 ORTHO05D001487 6.8e-18 97.4 932 24.6
Zm00001eb095310 Zea mays HOM05D006269 ORTHO05D001487 1.3e-16 93.2 333 30.0
Nitab4.5_0000305g0340 Nicotiana tabacum HOM05D006269 ORTHO05D001487 4.2e-15 88.2 389 25.2
Oeu004921.1 Olea europaea HOM05D006269 ORTHO05D001487 3.5e-14 85.1 171 36.8
SEGI_27071 Sequoiadendron giganteum HOM05D006269 ORTHO05D001487 1.0e-13 83.6 679 22.4
Nitab4.5_0000305g0330 Nicotiana tabacum HOM05D006269 ORTHO05D001487 2.3e-13 82.4 726 24.7
AagrBONN_evm.TU.Sc2ySwM_228.5492 Anthoceros agrestis HOM05D006269 ORTHO05D001487 1.9e-12 79.3 112 40.2
Glyma.18G186200 Glycine max HOM05D006269 ORTHO05D001487 9.6e-12 77.0 516 25.4
Pp3c13_3400 Physcomitrium patens HOM05D006269 ORTHO05D001487 1.6e-11 76.3 568 25.0
HanXRQChr06g0166911 Helianthus annuus HOM05D006269 ORTHO05D001487 2.4e-10 72.4 869 22.6
Zm00001eb382930 Zea mays HOM05D006269 ORTHO05D001487 4.0e-10 71.6 92 44.6
Thecc.02G200000 Theobroma cacao HOM05D002685 ORTHO05D001487 1.2e-09 70.1 265 29.1
Pp3c7_10910 Physcomitrium patens HOM05D002157 ORTHO05D002197 2.0e-09 69.3 107 39.3
Pp3c19_7760 Physcomitrium patens HOM05D006269 ORTHO05D001487 2.6e-09 68.9 107 40.2
SEGI_19997 Sequoiadendron giganteum HOM05D014410 ORTHO05D001487 2.6e-09 68.9 198 30.3
Mapoly0045s0108 Marchantia polymorpha HOM05D006269 ORTHO05D001487 3.4e-09 68.6 103 39.8
MD13G1123300 Malus domestica HOM05D002685 ORTHO05D001487 4.4e-09 68.2 139 33.1
SEGI_38563 Sequoiadendron giganteum HOM05D014410 ORTHO05D001487 4.4e-09 68.2 198 27.8
Pp3c21_6840 Physcomitrium patens HOM05D006269 ORTHO05D001487 5.8e-09 67.8 106 43.4
SEGI_30715 Sequoiadendron giganteum HOM05D014410 ORTHO05D001487 7.6e-09 67.4 141 31.9
Pp3c26_10790 Physcomitrium patens HOM05D006269 ORTHO05D001487 1.3e-08 66.6 229 29.7
Pp3c4_24420 Physcomitrium patens HOM05D006269 ORTHO05D001487 2.2e-08 65.9 285 27.4
SEGI_14808 Sequoiadendron giganteum HOM05D014410 ORTHO05D001487 2.9e-08 65.5 162 30.2
Carub.0001s1174 Capsella rubella HOM05D002685 ORTHO05D001487 3.8e-08 65.1 126 38.1
SEGI_05188 Sequoiadendron giganteum HOM05D006269 ORTHO05D001487 3.8e-08 65.1 104 34.6
Thhalv10008770m.g Eutrema salsugineum HOM05D002685 ORTHO05D001487 4.9e-08 64.7 121 38.8
Aqoxy3G01654 Aquilegia oxysepala HOM05D002685 ORTHO05D001487 6.4e-08 64.3 145 31.7
EL10Ac6g13549 Beta vulgaris HOM05D002685 ORTHO05D001487 6.4e-08 64.3 107 37.4
Oeu025712.1 Olea europaea HOM05D005710 ORTHO05D004657 6.4e-08 64.3 149 33.6
COL.COLO4_24722 Corchorus olitorius HOM05D002685 ORTHO05D001487 8.4e-08 63.9 168 31.0
Gorai.005G194800 Gossypium raimondii HOM05D002685 ORTHO05D001487 8.4e-08 63.9 102 35.3
Duzib052G0088 Durio zibethinus HOM05D002685 ORTHO05D001487 1.1e-07 63.5 254 24.4
Gohir.A03G150100 Gossypium hirsutum HOM05D002685 ORTHO05D001487 1.1e-07 63.5 102 35.3
Gorai.005G194700 Gossypium raimondii HOM05D002685 ORTHO05D001487 1.1e-07 63.5 102 35.3
AL1G23310 Arabidopsis lyrata HOM05D002685 ORTHO05D001487 1.4e-07 63.2 127 36.2
CARHR012420 Cardamine hirsuta HOM05D002685 ORTHO05D001487 1.9e-07 62.8 107 38.3
Gohir.D02G173100 Gossypium hirsutum HOM05D002685 ORTHO05D001487 2.4e-07 62.4 102 35.3
Actinidia07818 Actinidia chinensis HOM05D005710 ORTHO05D004657 3.2e-07 62.0 118 34.7
C08p15160 Brassica napus HOM05D002685 ORTHO05D001487 4.2e-07 61.6 128 35.2
BolC8t49146H Brassica oleracea HOM05D002685 ORTHO05D001487 4.2e-07 61.6 128 35.2
Mapoly0035s0113 Marchantia polymorpha HOM05D006269 ORTHO05D001487 4.2e-07 61.6 383 23.5
Nitab4.5_0004556g0030 Nicotiana tabacum HOM05D002685 ORTHO05D001487 4.2e-07 61.6 146 30.8
Cpa.g.sc75.118 Carica papaya HOM05D002685 ORTHO05D001487 5.4e-07 61.2 150 30.7
MD16G1124100 Malus domestica HOM05D002685 ORTHO05D001487 5.4e-07 61.2 131 32.8
TPR.G21267 Trifolium pratense HOM05D006269 ORTHO05D001487 5.4e-07 61.2 184 31.5
Aa31LG1G2670 Aethionema arabicum HOM05D002685 ORTHO05D001487 7.1e-07 60.8 158 29.7
Sp1g10730 Schrenkiella parvula HOM05D002685 ORTHO05D001487 7.1e-07 60.8 153 34.6
ECA234G0665 Erigeron canadensis HOM05D002685 ORTHO05D001487 9.3e-07 60.5 111 34.2
AT1G12060 Arabidopsis thaliana HOM05D002685 ORTHO05D001487 1.2e-06 60.1 127 35.4
BraA08t35225Z Brassica rapa HOM05D002685 ORTHO05D001487 1.2e-06 60.1 109 35.8
PSO478G1813 Papaver somniferum HOM05D005710 ORTHO05D004657 1.2e-06 60.1 115 35.7
Medtr2g025690 Medicago truncatula HOM05D002685 ORTHO05D001487 1.6e-06 59.7 112 30.4
Nitab4.5_0003251g0040 Nicotiana tabacum HOM05D002685 ORTHO05D001487 1.6e-06 59.7 226 28.3
QL03p051288 Quercus lobata HOM05D002685 ORTHO05D001487 1.6e-06 59.7 185 29.2
Sc14g0009180 Simmondsia chinensis HOM05D002685 ORTHO05D001487 1.6e-06 59.7 262 27.1
C08p40580 Brassica napus HOM05D002685 ORTHO05D001487 2.1e-06 59.3 120 34.2
COL.COLO4_35705 Corchorus olitorius HOM05D002685 ORTHO05D001487 2.1e-06 59.3 264 28.8
Peaxi162Scf00128g00166 Petunia axillaris HOM05D002685 ORTHO05D001487 2.1e-06 59.3 143 29.4
SEGI_15116 Sequoiadendron giganteum HOM05D006269 ORTHO05D001487 2.1e-06 59.3 148 29.1
THA.LOC104825581 Tarenaya hassleriana HOM05D002685 ORTHO05D001487 2.1e-06 59.3 245 29.0
Atru.chr1.2459 Acer truncatum HOM05D002685 ORTHO05D001487 2.7e-06 58.9 133 30.1
BcaC07g41055 Brassica carinata HOM05D002685 ORTHO05D001487 2.7e-06 58.9 116 34.5
BcaC07g41059 Brassica carinata HOM05D002685 ORTHO05D001487 2.7e-06 58.9 116 34.5
Cpa.g.sc14.156 Carica papaya HOM05D005710 ORTHO05D004657 2.7e-06 58.9 101 36.6
Duzib147G0411 Durio zibethinus HOM05D005710 ORTHO05D004657 2.7e-06 58.9 104 33.7
FvH4_4g23260 Fragaria vesca HOM05D002685 ORTHO05D001487 2.7e-06 58.9 124 31.5
FAN12G0439 Fragaria x ananassa HOM05D002685 ORTHO05D001487 2.7e-06 58.9 124 31.5
A08p33050 Brassica napus HOM05D002685 ORTHO05D001487 3.5e-06 58.5 105 35.2
CANSAT01G2764 Cannabis sativa HOM05D002685 ORTHO05D001487 3.5e-06 58.5 173 28.9
Cfa007637 Carpinus fangiana HOM05D005710 ORTHO05D004657 3.5e-06 58.5 101 36.6
Cc07_g04040 Coffea canephora HOM05D005710 ORTHO05D004657 3.5e-06 58.5 147 29.9
Hma1.2p1_0481F.1_g161930 Hydrangea macrophylla HOM05D005710 ORTHO05D004657 3.5e-06 58.5 115 35.7
Oeu001318.1 Olea europaea HOM05D002685 ORTHO05D001487 3.5e-06 58.5 158 29.1
Peaxi162Scf00442g00043 Petunia axillaris HOM05D002685 ORTHO05D001487 3.5e-06 58.5 110 30.9
Sed0015254 Sechium edule HOM05D002685 ORTHO05D001487 3.5e-06 58.5 336 26.2
Aa31LG7G9970 Aethionema arabicum HOM05D002685 ORTHO05D001487 4.6e-06 58.2 142 30.3
CiPaw.09G102100 Carya illinoinensis HOM05D002685 ORTHO05D001487 4.6e-06 58.2 109 31.2
Gohir.A09G010900 Gossypium hirsutum HOM05D005710 ORTHO05D004657 4.6e-06 58.2 104 32.7
Ah.02g131020 Amaranthus hybridus HOM05D002685 ORTHO05D001487 6.0e-06 57.8 108 35.2
Duzib235G0187 Durio zibethinus HOM05D002685 ORTHO05D001487 6.0e-06 57.8 110 30.9
Gohir.A03G150201 Gossypium hirsutum HOM05D002685 ORTHO05D001487 6.0e-06 57.8 174 27.6
Gorai.006G011600 Gossypium raimondii HOM05D005710 ORTHO05D004657 6.0e-06 57.8 104 32.7
Pp3c19_17670 Physcomitrium patens HOM05D006269 ORTHO05D001487 6.0e-06 57.8 485 24.5
Sed0004040 Sechium edule HOM05D002685 ORTHO05D001487 6.0e-06 57.8 116 30.2
Solyc10g084170.1 Solanum lycopersicum HOM05D002685 ORTHO05D001487 6.0e-06 57.8 117 30.8
Atru.chr11.2379 Acer truncatum HOM05D002685 ORTHO05D001487 7.9e-06 57.4 127 29.9
CSS0035629 Camellia sinensis var. sinensis HOM05D002685 ORTHO05D001487 7.9e-06 57.4 105 31.4
Cpa.g.sc96.31 Carica papaya HOM05D002685 ORTHO05D001487 7.9e-06 57.4 105 33.3
Dinv07400 Davidia involucrata HOM05D002685 ORTHO05D001487 7.9e-06 57.4 131 31.3
Lj1C600T10 Lonicera japonica HOM05D002685 ORTHO05D001487 7.9e-06 57.4 143 28.7
TAR629G1863 Trochodendron aralioides HOM05D002685 ORTHO05D001487 7.9e-06 57.4 108 30.6


User provided reference genes

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