Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C04p01510 Brassica napus HOM05D011097 ORTHO05D012775 8.4e-154 547.0 273 100.0
BolC4t21802H Brassica oleracea HOM05D011097 ORTHO05D012775 2.9e-130 468.8 300 85.7
BcaC02g12529 Brassica carinata HOM05D011097 ORTHO05D012775 2.6e-115 419.1 206 99.5
A05p01330 Brassica napus HOM05D011097 ORTHO05D012775 5.4e-68 261.9 233 64.8
BraA05t19131Z Brassica rapa HOM05D011097 ORTHO05D012775 7.0e-68 261.5 234 64.5
AL4G45770 Arabidopsis lyrata HOM05D011097 ORTHO05D012775 5.8e-62 241.9 329 47.4
BcaC02g12527 Brassica carinata HOM05D011097 ORTHO05D012775 5.8e-62 241.9 283 55.8
BcaC02g12528 Brassica carinata HOM05D011097 ORTHO05D012775 2.2e-61 240.0 115 100.0
Sp4g28460 Schrenkiella parvula HOM05D011097 ORTHO05D012775 4.9e-53 212.2 322 45.7
Thhalv10001729m.g Eutrema salsugineum HOM05D011097 ORTHO05D012775 4.7e-48 195.7 166 62.7
C04p01470 Brassica napus HOM05D011097 ORTHO05D012775 3.8e-37 159.5 287 43.2
C04p01480 Brassica napus HOM05D011097 ORTHO05D012775 8.7e-34 148.3 105 75.2
BolC4t21801H Brassica oleracea HOM05D011097 ORTHO05D012775 7.6e-30 135.2 120 65.8
BcaB03g13955 Brassica carinata HOM05D011097 ORTHO05D012775 3.8e-29 132.9 155 57.4
AT2G46455 Arabidopsis thaliana HOM05D011097 ORTHO05D012775 7.9e-27 125.2 142 53.5
BcaB08g36603 Brassica carinata HOM05D011097 ORTHO05D012775 3.9e-26 122.9 93 67.7
THA.LOC104817347 Tarenaya hassleriana HOM05D002290 ORTHO05D002532 1.1e-23 114.8 232 36.2
AL2G13980 Arabidopsis lyrata HOM05D011097 ORTHO05D012775 1.4e-23 114.4 262 36.6
THA.LOC104817358 Tarenaya hassleriana HOM05D002290 ORTHO05D002532 9.0e-23 111.7 229 33.2
Sp4g28470 Schrenkiella parvula HOM05D002290 ORTHO05D002532 2.7e-19 100.1 227 30.4
THA.LOC104817353 Tarenaya hassleriana HOM05D002290 ORTHO05D002532 4.6e-19 99.4 231 36.4
AT2G46470 Arabidopsis thaliana HOM05D002290 ORTHO05D002532 1.8e-18 97.4 229 30.1
THA.LOC104817352 Tarenaya hassleriana HOM05D002290 ORTHO05D002532 3.9e-18 96.3 230 36.1
C03p30610 Brassica napus HOM05D002290 ORTHO05D002532 6.7e-18 95.5 214 30.8
BolC3t15411H Brassica oleracea HOM05D002290 ORTHO05D002532 6.7e-18 95.5 214 30.8
THA.LOC104827625 Tarenaya hassleriana HOM05D002290 ORTHO05D002532 6.7e-18 95.5 209 32.1
BcaC01g05067 Brassica carinata HOM05D002290 ORTHO05D002532 1.5e-17 94.4 214 30.4
Lj8A208G55 Lonicera japonica HOM05D002290 ORTHO05D002532 1.5e-17 94.4 237 29.1
Aa31LG1G27790 Aethionema arabicum HOM05D002290 ORTHO05D002532 1.9e-17 94.0 232 30.2
A03p25650 Brassica napus HOM05D002290 ORTHO05D002532 1.9e-17 94.0 214 30.4
Carub.0004s2915 Capsella rubella HOM05D002290 ORTHO05D002532 5.7e-17 92.4 228 30.3
AL4G45780 Arabidopsis lyrata HOM05D002290 ORTHO05D002532 7.4e-17 92.0 224 29.5
BcaB01g03216 Brassica carinata HOM05D002290 ORTHO05D002532 9.6e-17 91.7 220 30.0
BraA03t11780Z Brassica rapa HOM05D002290 ORTHO05D002532 2.1e-16 90.5 216 30.6
CARHR141770 Cardamine hirsuta HOM05D002290 ORTHO05D002532 2.1e-16 90.5 229 29.3
Sc01g0010300 Simmondsia chinensis HOM05D002290 ORTHO05D002532 2.8e-16 90.1 217 31.8
Dinv37532 Davidia involucrata HOM05D002290 ORTHO05D002532 4.8e-16 89.4 227 28.2
Dinv38832 Davidia involucrata HOM05D002290 ORTHO05D002532 6.2e-16 89.0 229 28.8
Potri.001G091800 Populus trichocarpa HOM05D002290 ORTHO05D002532 8.2e-16 88.6 226 27.9
ClCG07G015030 Citrullus lanatus HOM05D002290 ORTHO05D002532 1.1e-15 88.2 213 28.6
Duzib205G0860 Durio zibethinus HOM05D002290 ORTHO05D002532 2.4e-15 87.0 229 27.5
TAR375G0429 Trochodendron aralioides HOM05D002290 ORTHO05D002532 2.4e-15 87.0 230 27.8
Hma1.2p1_0359F.1_g135260 Hydrangea macrophylla HOM05D002290 ORTHO05D002532 3.1e-15 86.7 203 29.6
MELO3C016291.2 Cucumis melo HOM05D002290 ORTHO05D002532 5.3e-15 85.9 233 28.3
Aa31LG1G27800 Aethionema arabicum HOM05D002290 ORTHO05D002532 6.9e-15 85.5 262 28.6
Thhalv10001727m.g Eutrema salsugineum HOM05D002290 ORTHO05D002532 1.5e-14 84.3 228 28.1
Prupe.2G187000 Prunus persica HOM05D002290 ORTHO05D002532 2.0e-14 84.0 210 29.5
Eucgr.E00058 Eucalyptus grandis HOM05D002290 ORTHO05D002532 2.6e-14 83.6 235 29.8
HanXRQChr17g0535271 Helianthus annuus HOM05D002290 ORTHO05D002532 2.6e-14 83.6 219 28.8
Sabra01G0068200 Salix brachista HOM05D002290 ORTHO05D002532 2.6e-14 83.6 226 26.1
PGR042G2044 Punica granatum HOM05D002290 ORTHO05D002532 3.4e-14 83.2 226 29.6
Sed0023168 Sechium edule HOM05D002290 ORTHO05D002532 4.5e-14 82.8 232 27.2
Aqoxy7G00111 Aquilegia oxysepala HOM05D002290 ORTHO05D002532 5.8e-14 82.4 221 27.6
CsaV3_4G006570 Cucumis sativus L. HOM05D002290 ORTHO05D002532 7.6e-14 82.0 234 26.9
Atru.chr9.1999 Acer truncatum HOM05D002290 ORTHO05D002532 1.0e-13 81.6 213 26.3
PGR042G3133 Punica granatum HOM05D002290 ORTHO05D002532 2.9e-13 80.1 211 27.5
RcHm_v2.0_Chr1g0359321 Rosa chinensis HOM05D002290 ORTHO05D002532 2.9e-13 80.1 205 28.8
SGA_v2.0_scaffold305G47968 Striga asiatica HOM05D000324 ORTHO05D001014 2.9e-13 80.1 209 29.2
Gohir.A02G101200 Gossypium hirsutum HOM05D002290 ORTHO05D002532 3.8e-13 79.7 237 27.4
Sed0014582 Sechium edule HOM05D002290 ORTHO05D002532 5.0e-13 79.3 231 24.7
CSS0030360 Camellia sinensis var. sinensis HOM05D002290 ORTHO05D002532 1.1e-12 78.2 230 27.0
COL.COLO4_10696 Corchorus olitorius HOM05D002290 ORTHO05D002532 1.1e-12 78.2 231 29.9
DCAR_005044 Daucus carota HOM05D002290 ORTHO05D002532 1.1e-12 78.2 219 28.3
Duzib068G0387 Durio zibethinus HOM05D002290 ORTHO05D002532 1.1e-12 78.2 240 27.5
Oeu009958.1 Olea europaea HOM05D002290 ORTHO05D002532 1.4e-12 77.8 231 28.6
COL.COLO4_06294 Corchorus olitorius HOM05D002290 ORTHO05D002532 1.9e-12 77.4 210 29.5
Aqoxy5G04225 Aquilegia oxysepala HOM05D002290 ORTHO05D002532 2.5e-12 77.0 210 27.6
CSS0016367 Camellia sinensis var. sinensis HOM05D002290 ORTHO05D002532 2.5e-12 77.0 227 26.4
CSS0049945 Camellia sinensis var. sinensis HOM05D002290 ORTHO05D002532 2.5e-12 77.0 227 26.4
Ciclev10020194m.g Citrus clementina HOM05D002290 ORTHO05D002532 3.2e-12 76.6 227 26.0
Gorai.007G026600 Gossypium raimondii HOM05D002290 ORTHO05D002532 3.2e-12 76.6 232 27.6
Actinidia22155 Actinidia chinensis HOM05D002290 ORTHO05D002532 7.1e-12 75.5 209 26.8
Migut.E01251 Erythranthe guttata HOM05D002290 ORTHO05D002532 7.1e-12 75.5 233 28.3
Gohir.D11G024800 Gossypium hirsutum HOM05D002290 ORTHO05D002532 7.1e-12 75.5 232 27.6
Gohir.D03G083100 Gossypium hirsutum HOM05D002290 ORTHO05D002532 9.3e-12 75.1 237 27.0
Rhsim07G0082400 Rhododendron simsii HOM05D002290 ORTHO05D002532 9.3e-12 75.1 226 26.5
Lj2g0019811 Lotus japonicus HOM05D002290 ORTHO05D002532 1.2e-11 74.7 219 26.9
MD07G1148500 Malus domestica HOM05D002290 ORTHO05D002532 1.2e-11 74.7 209 27.3
EL10Ac5g12913 Beta vulgaris HOM05D002290 ORTHO05D002532 1.6e-11 74.3 208 28.8
ECA248G0759 Erigeron canadensis HOM05D002290 ORTHO05D002532 1.6e-11 74.3 179 31.8
Haze_04372 Corylus avellana HOM05D002290 ORTHO05D002532 2.1e-11 73.9 228 26.3
Eucgr.E00860 Eucalyptus grandis HOM05D002290 ORTHO05D002532 2.1e-11 73.9 206 26.2
Glyma.07G235200 Glycine max HOM05D002290 ORTHO05D002532 2.1e-11 73.9 211 27.0
Manes.12G013800 Manihot esculenta HOM05D002290 ORTHO05D002532 2.1e-11 73.9 227 25.1
Psat7g112000 Pisum sativum HOM05D002290 ORTHO05D002532 2.1e-11 73.9 208 25.5
THA.LOC104817356 Tarenaya hassleriana HOM05D002290 ORTHO05D012775 2.1e-11 73.9 144 35.4
SalBow1G4018 Salvia bowleyana HOM05D002290 ORTHO05D002532 2.7e-11 73.6 196 30.1
Psat4g003840 Pisum sativum HOM05D002290 ORTHO05D002532 3.5e-11 73.2 206 25.7
Prupe.5G118500 Prunus persica HOM05D002290 ORTHO05D002532 3.5e-11 73.2 231 26.4
CiPaw.11G121700 Carya illinoinensis HOM05D002290 ORTHO05D002532 4.6e-11 72.8 208 26.4
GSVIVG01019529001 Vitis vinifera HOM05D002290 ORTHO05D002532 4.6e-11 72.8 213 27.2
arahy.Tifrunner.gnm1.ann1.R32419 Arachis hypogaea HOM05D002290 ORTHO05D002532 6.1e-11 72.4 207 28.0
Cfa006406 Carpinus fangiana HOM05D002290 ORTHO05D002532 6.1e-11 72.4 214 25.7
Ca_18517_v3 Cicer arietinum L. HOM05D002290 ORTHO05D002532 6.1e-11 72.4 208 25.5
Oeu034335.1 Olea europaea HOM05D002290 ORTHO05D002532 6.1e-11 72.4 228 26.3
Potri.006G073000 Populus trichocarpa HOM05D002290 ORTHO05D002532 6.1e-11 72.4 209 29.2
Sopen08g030560 Solanum pennellii HOM05D002290 ORTHO05D002532 7.9e-11 72.0 211 26.1
Gorai.003G080300 Gossypium raimondii HOM05D002290 ORTHO05D002532 1.0e-10 71.6 175 28.0
Lalb_Chr20g0108181 Lupinus albus HOM05D002290 ORTHO05D002532 1.3e-10 71.2 214 26.2
MSTRG.13884 Avicennia marina HOM05D002290 ORTHO05D002532 1.8e-10 70.9 223 26.5
CANSAT21G2386 Cannabis sativa HOM05D002290 ORTHO05D002532 1.8e-10 70.9 226 26.1
Glyma.13G182900 Glycine max HOM05D002290 ORTHO05D002532 1.8e-10 70.9 234 24.8
Gohir.D12G237500 Gossypium hirsutum HOM05D002290 ORTHO05D002532 1.8e-10 70.9 234 27.4
Gorai.008G254200 Gossypium raimondii HOM05D002290 ORTHO05D002532 1.8e-10 70.9 234 27.4
arahy.Tifrunner.gnm1.ann1.H71861 Arachis hypogaea HOM05D002290 ORTHO05D002532 2.3e-10 70.5 207 27.1
Glyma.07G193700 Glycine max HOM05D002290 ORTHO05D002532 3.9e-10 69.7 208 25.5
arahy.Tifrunner.gnm1.ann1.EY65RF Arachis hypogaea HOM05D002290 ORTHO05D002532 5.1e-10 69.3 220 25.9
Gohir.A12G236300 Gossypium hirsutum HOM05D002290 ORTHO05D002532 5.1e-10 69.3 231 26.8
MSTRG.11925 Avicennia marina HOM05D002290 ORTHO05D002532 8.7e-10 68.6 196 27.6
THA.LOC104821823 Tarenaya hassleriana HOM05D002290 ORTHO05D002532 8.7e-10 68.6 177 26.6
TPR.G38405 Trifolium pratense HOM05D002290 ORTHO05D002532 8.7e-10 68.6 219 23.3
TWI81G0556 Tripterygium wilfordii HOM05D002290 ORTHO05D002532 8.7e-10 68.6 232 25.4
Actinidia27317 Actinidia chinensis HOM05D002290 ORTHO05D002532 1.1e-09 68.2 206 27.7
arahy.Tifrunner.gnm1.ann1.X1WEHF Arachis hypogaea HOM05D002290 ORTHO05D002532 1.5e-09 67.8 220 25.9
Lalb_Chr25g0283581 Lupinus albus HOM05D002290 ORTHO05D002532 1.5e-09 67.8 214 25.2
arahy.Tifrunner.gnm1.ann1.SMD748 Arachis hypogaea HOM05D002290 ORTHO05D002532 1.9e-09 67.4 207 25.1
RcHm_v2.0_Chr1g0378431 Rosa chinensis HOM05D002290 ORTHO05D002532 1.9e-09 67.4 178 28.1
Aa31LG5G18540 Aethionema arabicum HOM05D002290 ORTHO05D002532 2.5e-09 67.0 207 25.6
Cc08_g16040 Coffea canephora HOM05D002290 ORTHO05D002532 3.3e-09 66.6 212 25.0
Phvul.002G225801 Phaseolus vulgaris HOM05D002290 ORTHO05D002532 3.3e-09 66.6 212 25.0
THA.LOC104821813 Tarenaya hassleriana HOM05D002290 ORTHO05D002532 3.3e-09 66.6 177 26.6
PGSC0003DMG400005839 Solanum tuberosum HOM05D002290 ORTHO05D002532 4.3e-09 66.2 210 24.3
CAN.G532.120 Capsicum annuum HOM05D002290 ORTHO05D002532 5.7e-09 65.9 211 24.6
Thhalv10004275m.g Eutrema salsugineum HOM05D002290 ORTHO05D002532 5.7e-09 65.9 207 24.6
Os03g0116000 Oryza sativa ssp. japonica HOM05D002290 ORTHO05D002532 5.7e-09 65.9 161 29.8
Lsat_1_v5_gn_3_24221 Lactuca sativa HOM05D002290 ORTHO05D002532 7.4e-09 65.5 174 30.5
Sc23g0002130 Simmondsia chinensis HOM05D002290 ORTHO05D002532 7.4e-09 65.5 227 27.3
Medtr4g107330 Medicago truncatula HOM05D002290 ORTHO05D002532 9.7e-09 65.1 204 25.5
Solyc08g008320.3 Solanum lycopersicum HOM05D002290 ORTHO05D002532 9.7e-09 65.1 211 24.6
Sopen08g004180 Solanum pennellii HOM05D002290 ORTHO05D002532 9.7e-09 65.1 211 24.6
VMungo0251G0742 Vigna mungo HOM05D002290 ORTHO05D002532 9.7e-09 65.1 213 26.3
AT5G62050 Arabidopsis thaliana HOM05D002290 ORTHO05D002532 1.3e-08 64.7 219 26.9
Carub.0006s2587 Capsella rubella HOM05D011097 ORTHO05D012775 1.3e-08 64.7 118 39.0
CAN.G792.39 Capsicum annuum HOM05D002290 ORTHO05D002532 1.3e-08 64.7 210 24.3
CARHR275840 Cardamine hirsuta HOM05D002290 ORTHO05D002532 1.3e-08 64.7 214 24.8
ECA246G3661 Erigeron canadensis HOM05D002290 ORTHO05D002532 1.3e-08 64.7 198 27.3
Thhalv10001675m.g Eutrema salsugineum HOM05D002290 ORTHO05D012775 1.6e-08 64.3 144 41.0
FvH4_7g16310 Fragaria vesca HOM05D002290 ORTHO05D002532 1.6e-08 64.3 174 28.7
FAN01G2053 Fragaria x ananassa HOM05D002290 ORTHO05D002532 1.6e-08 64.3 174 28.2
Psat7g111880 Pisum sativum HOM05D002290 ORTHO05D002532 1.6e-08 64.3 214 25.7
AL8G38820 Arabidopsis lyrata HOM05D002290 ORTHO05D002532 2.2e-08 63.9 214 26.6
Carub.0008s2273 Capsella rubella HOM05D002290 ORTHO05D002532 2.2e-08 63.9 210 24.3
CDE02G2859 Ceratophyllum demersum HOM05D002290 ORTHO05D002532 2.2e-08 63.9 200 29.0
Migut.A00644 Erythranthe guttata HOM05D002290 ORTHO05D002532 2.2e-08 63.9 217 27.2
FAN06G4253 Fragaria x ananassa HOM05D002290 ORTHO05D002532 2.2e-08 63.9 174 28.2
FAN10G0122 Fragaria x ananassa HOM05D002290 ORTHO05D002532 2.2e-08 63.9 174 28.2
SalBow8G0465 Salvia bowleyana HOM05D002290 ORTHO05D002532 2.2e-08 63.9 157 27.4
Zm00001eb021300 Zea mays HOM05D002290 ORTHO05D002532 2.2e-08 63.9 187 26.7
TAR629G2459 Trochodendron aralioides HOM05D002290 ORTHO05D002532 2.8e-08 63.5 166 27.7
Peaxi162Scf00074g00928 Petunia axillaris HOM05D002290 ORTHO05D002532 3.7e-08 63.2 227 24.2
Aa31sc1839G10 Aethionema arabicum HOM05D002290 ORTHO05D002532 4.8e-08 62.8 237 25.7
C03p64900 Brassica napus HOM05D002290 ORTHO05D002532 4.8e-08 62.8 217 23.0
BolC3t18752H Brassica oleracea HOM05D002290 ORTHO05D002532 4.8e-08 62.8 217 23.0
DCAR_027702 Daucus carota HOM05D002290 ORTHO05D002532 4.8e-08 62.8 202 24.8
Lalb_Chr25g0283571 Lupinus albus HOM05D002290 ORTHO05D002532 4.8e-08 62.8 212 23.6
FAN10G3207 Fragaria x ananassa HOM05D002290 ORTHO05D002532 6.3e-08 62.4 174 27.6
Aa31LG11G1480 Aethionema arabicum HOM05D002290 ORTHO05D002532 1.1e-07 61.6 213 23.9
A06p28750 Brassica napus HOM05D002290 ORTHO05D002532 1.1e-07 61.6 206 23.8
BraA06t25816Z Brassica rapa HOM05D002290 ORTHO05D002532 1.1e-07 61.6 207 23.7
Potri.018G140100 Populus trichocarpa HOM05D002290 ORTHO05D002532 1.1e-07 61.6 210 25.7
TPR.G12131 Trifolium pratense HOM05D002290 ORTHO05D002532 1.4e-07 61.2 198 23.2
CiPaw.12G083300 Carya illinoinensis HOM05D002290 ORTHO05D002532 2.4e-07 60.5 157 27.4
AUR62019837 Chenopodium quinoa HOM05D002290 ORTHO05D002532 4.1e-07 59.7 214 24.3
Medtr4g089105 Medicago truncatula HOM05D002290 ORTHO05D002532 5.3e-07 59.3 206 23.3
Sp2g25220 Schrenkiella parvula HOM05D002290 ORTHO05D002532 6.9e-07 58.9 207 23.2
FvH4_5g04530 Fragaria vesca HOM05D002290 ORTHO05D002532 9.0e-07 58.5 228 24.6
FAN18G0527 Fragaria x ananassa HOM05D002290 ORTHO05D002532 9.0e-07 58.5 228 24.6
FAN18G1754 Fragaria x ananassa HOM05D002290 ORTHO05D002532 9.0e-07 58.5 228 24.6
Peaxi162Scf00102g01756 Petunia axillaris HOM05D002290 ORTHO05D002532 9.0e-07 58.5 230 23.9
FAN06G0145 Fragaria x ananassa HOM05D002290 ORTHO05D002532 1.2e-06 58.2 171 26.3
Os10g0521300 Oryza sativa ssp. japonica HOM05D002290 ORTHO05D002532 1.5e-06 57.8 175 27.4
FAN04G0835 Fragaria x ananassa HOM05D002290 ORTHO05D002532 2.6e-06 57.0 190 25.8
THA.LOC104823804 Tarenaya hassleriana HOM05D002290 ORTHO05D002532 2.6e-06 57.0 165 26.1
PSO170G3987 Papaver somniferum HOM05D002290 ORTHO05D002532 4.5e-06 56.2 195 25.6
Thecc.03G297400 Theobroma cacao HOM05D002290 ORTHO05D002532 4.5e-06 56.2 149 28.2
Cpa.g.sc1.159 Carica papaya HOM05D002290 ORTHO05D002532 5.9e-06 55.8 127 26.0
Nitab4.5_0007521g0030 Nicotiana tabacum HOM05D002290 ORTHO05D002532 5.9e-06 55.8 228 26.3
AL5G28850 Arabidopsis lyrata HOM05D002290 ORTHO05D002532 7.7e-06 55.5 134 30.6
CDE02G2069 Ceratophyllum demersum HOM05D002290 ORTHO05D002532 7.7e-06 55.5 129 29.5
FAN08G3549 Fragaria x ananassa HOM05D002290 ORTHO05D002532 7.7e-06 55.5 189 27.0
PSO063G5717 Papaver somniferum HOM05D002290 ORTHO05D002532 7.7e-06 55.5 195 25.6


User provided reference genes

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