Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C04p01470 Brassica napus HOM05D011097 ORTHO05D012775 7.7e-200 700.3 355 100.0
BcaC02g12527 Brassica carinata HOM05D011097 ORTHO05D012775 2.5e-102 376.3 184 99.5
BolC4t21801H Brassica oleracea HOM05D011097 ORTHO05D012775 2.4e-60 236.9 120 96.7
BolC4t21802H Brassica oleracea HOM05D011097 ORTHO05D012775 1.6e-59 234.2 345 47.0
A05p01330 Brassica napus HOM05D011097 ORTHO05D012775 1.9e-49 200.7 182 67.0
BraA05t19131Z Brassica rapa HOM05D011097 ORTHO05D012775 8.9e-47 191.8 183 66.7
Thhalv10001729m.g Eutrema salsugineum HOM05D011097 ORTHO05D012775 6.0e-43 179.1 179 57.5
C04p01510 Brassica napus HOM05D011097 ORTHO05D012775 6.4e-37 159.1 287 43.2
AL4G45770 Arabidopsis lyrata HOM05D011097 ORTHO05D012775 1.4e-36 157.9 371 35.0
BcaB03g13955 Brassica carinata HOM05D011097 ORTHO05D012775 1.2e-35 154.8 123 70.7
C04p01480 Brassica napus HOM05D011097 ORTHO05D012775 4.6e-35 152.9 148 60.1
AT2G46455 Arabidopsis thaliana HOM05D011097 ORTHO05D012775 6.8e-31 139.0 174 49.4
Sp4g28460 Schrenkiella parvula HOM05D011097 ORTHO05D012775 1.3e-29 134.8 161 54.0
BcaC02g12529 Brassica carinata HOM05D011097 ORTHO05D012775 1.1e-28 131.7 119 67.2
BcaC02g12528 Brassica carinata HOM05D011097 ORTHO05D012775 3.2e-28 130.2 118 66.1
AL2G13980 Arabidopsis lyrata HOM05D011097 ORTHO05D012775 4.4e-22 109.8 189 43.4
BcaB08g36603 Brassica carinata HOM05D011097 ORTHO05D012775 2.9e-21 107.1 55 89.1
THA.LOC104817352 Tarenaya hassleriana HOM05D002290 ORTHO05D002532 6.2e-16 89.4 149 39.6
THA.LOC104817347 Tarenaya hassleriana HOM05D002290 ORTHO05D002532 1.8e-15 87.8 151 39.7
THA.LOC104817356 Tarenaya hassleriana HOM05D002290 ORTHO05D012775 4.5e-14 83.2 152 38.2
THA.LOC104817353 Tarenaya hassleriana HOM05D002290 ORTHO05D002532 1.7e-13 81.3 171 36.3
THA.LOC104817358 Tarenaya hassleriana HOM05D002290 ORTHO05D002532 1.1e-09 68.6 175 32.0
BcaB01g03216 Brassica carinata HOM05D002290 ORTHO05D002532 9.6e-09 65.5 159 32.7
AT2G46470 Arabidopsis thaliana HOM05D002290 ORTHO05D002532 2.8e-08 63.9 180 35.0
Potri.001G091800 Populus trichocarpa HOM05D002290 ORTHO05D002532 4.8e-08 63.2 215 27.9
Sabra01G0068200 Salix brachista HOM05D002290 ORTHO05D002532 6.2e-08 62.8 167 30.5
CARHR141770 Cardamine hirsuta HOM05D002290 ORTHO05D002532 1.1e-07 62.0 165 33.3
MELO3C016291.2 Cucumis melo HOM05D002290 ORTHO05D002532 2.4e-07 60.8 144 32.6
Atru.chr9.1999 Acer truncatum HOM05D002290 ORTHO05D002532 3.1e-07 60.5 216 27.3
Sp4g28470 Schrenkiella parvula HOM05D002290 ORTHO05D002532 3.1e-07 60.5 133 33.8
COL.COLO4_10696 Corchorus olitorius HOM05D002290 ORTHO05D002532 4.0e-07 60.1 112 35.7
Eucgr.E00058 Eucalyptus grandis HOM05D002290 ORTHO05D002532 4.0e-07 60.1 174 28.2
ClCG07G015030 Citrullus lanatus HOM05D002290 ORTHO05D002532 5.3e-07 59.7 143 32.2
Duzib205G0860 Durio zibethinus HOM05D002290 ORTHO05D002532 1.2e-06 58.5 173 28.9
THA.LOC104827625 Tarenaya hassleriana HOM05D002290 ORTHO05D002532 1.2e-06 58.5 94 37.2
Carub.0004s2915 Capsella rubella HOM05D002290 ORTHO05D002532 1.5e-06 58.2 165 33.3
CsaV3_4G006570 Cucumis sativus L. HOM05D002290 ORTHO05D002532 1.5e-06 58.2 144 31.2
Aa31LG1G27790 Aethionema arabicum HOM05D002290 ORTHO05D002532 2.0e-06 57.8 118 36.4
BraA03t11780Z Brassica rapa HOM05D002290 ORTHO05D002532 2.0e-06 57.8 126 37.3
A03p25650 Brassica napus HOM05D002290 ORTHO05D002532 3.4e-06 57.0 125 36.8
AL4G45780 Arabidopsis lyrata HOM05D002290 ORTHO05D002532 4.5e-06 56.6 152 32.9
C03p30610 Brassica napus HOM05D002290 ORTHO05D002532 4.5e-06 56.6 125 36.8
BolC3t15411H Brassica oleracea HOM05D002290 ORTHO05D002532 4.5e-06 56.6 125 36.8
HanXRQChr17g0535271 Helianthus annuus HOM05D002290 ORTHO05D002532 4.5e-06 56.6 100 37.0
Cpa.g.sc1.159 Carica papaya HOM05D002290 ORTHO05D002532 7.6e-06 55.8 187 33.7
BcaC01g05067 Brassica carinata HOM05D002290 ORTHO05D002532 1.0e-05 55.5 125 36.0
Thhalv10001727m.g Eutrema salsugineum HOM05D002290 ORTHO05D002532 1.0e-05 55.5 133 32.3


User provided reference genes

Program Settings