Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC02g12671 Brassica carinata HOM05D007265 ORTHO05D009118 8.5e-28 126.3 66 100.0
BcaC02g12679 Brassica carinata HOM05D007265 ORTHO05D009118 8.5e-28 126.3 66 100.0
C04p01380 Brassica napus HOM05D007265 ORTHO05D009118 8.5e-28 126.3 66 100.0
BolC4t21791H Brassica oleracea HOM05D007265 ORTHO05D009118 8.5e-28 126.3 66 100.0
BraA05t19124Z Brassica rapa HOM05D007265 ORTHO05D009118 8.5e-28 126.3 66 100.0
AT2G46540 Arabidopsis thaliana HOM05D007265 ORTHO05D009118 2.5e-27 124.8 66 98.5
Sp4g28590 Schrenkiella parvula HOM05D007265 ORTHO05D009118 2.5e-27 124.8 66 98.5
AL4G45970 Arabidopsis lyrata HOM05D007265 ORTHO05D009118 3.2e-27 124.4 66 97.0
Carub.0004s2926 Capsella rubella HOM05D007265 ORTHO05D009118 4.2e-27 124.0 64 100.0
BcaC02g07039 Brassica carinata HOM05D007265 ORTHO05D009118 8.8e-25 116.3 66 93.9
THA.LOC104817372 Tarenaya hassleriana HOM05D007265 ORTHO05D009118 8.8e-25 116.3 64 87.5
A04p34450 Brassica napus HOM05D007265 ORTHO05D009118 2.6e-24 114.8 66 92.4
CARHR141880 Cardamine hirsuta HOM05D007265 ORTHO05D009118 2.6e-24 114.8 66 90.9
THA.LOC104802081 Tarenaya hassleriana HOM05D007265 ORTHO05D009118 7.5e-24 113.2 64 85.9
BraA04t18903Z Brassica rapa HOM05D007265 ORTHO05D009118 9.8e-24 112.8 66 90.9
BolC4t28709H Brassica oleracea HOM05D007265 ORTHO05D009118 1.1e-22 109.4 66 87.9
Hma1.2p1_0390F.1_g142620 Hydrangea macrophylla HOM05D007265 ORTHO05D009118 1.8e-22 108.6 64 85.9
BcaC02g07016 Brassica carinata HOM05D007265 ORTHO05D009118 5.4e-22 107.1 58 96.6
A05p01230 Brassica napus HOM05D007265 ORTHO05D009118 5.4e-22 107.1 55 100.0
Cc02_g39560 Coffea canephora HOM05D007265 ORTHO05D009118 1.6e-21 105.5 63 82.5
Atru.chr5.686 Acer truncatum HOM05D007265 ORTHO05D009118 2.7e-21 104.8 63 84.1
MD01G1083600 Malus domestica HOM05D007265 ORTHO05D009118 2.7e-21 104.8 63 85.7
MD07G1152300 Malus domestica HOM05D007265 ORTHO05D009118 2.7e-21 104.8 63 85.7
PGSC0003DMG400000233 Solanum tuberosum HOM05D007265 ORTHO05D009118 3.5e-21 104.4 64 82.8
Nitab4.5_0003865g0020 Nicotiana tabacum HOM05D007265 ORTHO05D009118 4.5e-21 104.0 64 81.2
Sabra02G0140200 Salix brachista HOM05D007265 ORTHO05D009118 4.5e-21 104.0 66 80.3
Thecc.01G340400 Theobroma cacao HOM05D007265 ORTHO05D009118 4.5e-21 104.0 64 81.2
Duzib138G0325 Durio zibethinus HOM05D007265 ORTHO05D009118 1.0e-20 102.8 64 82.8
Prupe.2G190600 Prunus persica HOM05D007265 ORTHO05D009118 1.0e-20 102.8 63 84.1
CAN.G1415.20 Capsicum annuum HOM05D007265 ORTHO05D009118 1.3e-20 102.4 64 81.2
Ciclev10023834m.g Citrus clementina HOM05D007265 ORTHO05D009118 1.3e-20 102.4 64 81.2
Nn1g00287 Nelumbo nucifera HOM05D007265 ORTHO05D009118 1.3e-20 102.4 64 79.7
Potri.002G173101 Populus trichocarpa HOM05D007265 ORTHO05D009118 1.3e-20 102.4 66 80.3
Aa31LG1G27910 Aethionema arabicum HOM05D007265 ORTHO05D009118 1.7e-20 102.1 54 92.6
CiPaw.01G077600 Carya illinoinensis HOM05D007265 ORTHO05D009118 1.7e-20 102.1 63 82.5
Thhalv10001742m.g Eutrema salsugineum HOM05D007265 ORTHO05D009118 1.7e-20 102.1 114 57.0
Nitab4.5_0000258g0270 Nicotiana tabacum HOM05D007265 ORTHO05D009118 1.7e-20 102.1 64 78.1
PSO063G4371 Papaver somniferum HOM05D007265 ORTHO05D009118 1.7e-20 102.1 64 79.7
CSS0038215 Camellia sinensis var. sinensis HOM05D007265 ORTHO05D009118 2.3e-20 101.7 64 79.7
TAR374G1528 Trochodendron aralioides HOM05D007265 ORTHO05D009118 2.3e-20 101.7 61 83.6
MELO3C022263.2 Cucumis melo HOM05D007265 ORTHO05D009118 2.9e-20 101.3 63 79.4
Lj7E499T0 Lonicera japonica HOM05D007265 ORTHO05D009118 2.9e-20 101.3 64 76.6
Oeu008708.1 Olea europaea HOM05D007265 ORTHO05D009118 2.9e-20 101.3 64 76.6
Solyc01g096090.4 Solanum lycopersicum HOM05D007265 ORTHO05D009118 2.9e-20 101.3 64 81.2
Sopen01g039810 Solanum pennellii HOM05D007265 ORTHO05D009118 2.9e-20 101.3 64 81.2
HPP92_020189 Vanilla planifolia HOM05D004435 ORTHO05D005103 2.9e-20 101.3 64 78.1
GSVIVG01027169001 Vitis vinifera HOM05D007265 ORTHO05D009118 2.9e-20 101.3 64 78.1
Duzib133G0073 Durio zibethinus HOM05D007265 ORTHO05D009118 3.8e-20 100.9 64 79.7
PSO170G4391 Papaver somniferum HOM05D007265 ORTHO05D009118 3.8e-20 100.9 64 78.1
CsaV3_6G008500 Cucumis sativus L. HOM05D007265 ORTHO05D009118 5.0e-20 100.5 63 79.4
PGR042G1917 Punica granatum HOM05D007265 ORTHO05D009118 5.0e-20 100.5 66 77.3
DCAR_005402 Daucus carota HOM05D007265 ORTHO05D009118 6.6e-20 100.1 64 78.1
Gohir.A11G097900 Gossypium hirsutum HOM05D007265 ORTHO05D009118 6.6e-20 100.1 64 79.7
Gohir.D11G102600 Gossypium hirsutum HOM05D007265 ORTHO05D009118 6.6e-20 100.1 64 79.7
ATR0602G127 Amborella trichopoda HOM05D007265 ORTHO05D009118 8.6e-20 99.8 64 78.1
TWI59G0786 Tripterygium wilfordii HOM05D007265 ORTHO05D009118 8.6e-20 99.8 63 79.4
Nitab4.5_0001763g0020 Nicotiana tabacum HOM05D007265 ORTHO05D009118 1.1e-19 99.4 64 79.7
DCAR_025264 Daucus carota HOM05D007265 ORTHO05D009118 2.5e-19 98.2 64 78.1
Gohir.D12G116700 Gossypium hirsutum HOM05D007265 ORTHO05D009118 3.3e-19 97.8 64 76.6
Sed0002056 Sechium edule HOM05D007265 ORTHO05D009118 4.2e-19 97.4 63 77.8
HanXRQChr03g0093001 Helianthus annuus HOM05D007265 ORTHO05D009118 9.5e-19 96.3 63 74.6
Gohir.A12G113200 Gossypium hirsutum HOM05D007265 ORTHO05D009118 1.2e-18 95.9 64 75.0
Migut.N01534 Erythranthe guttata HOM05D007265 ORTHO05D009118 1.6e-18 95.5 66 72.7
Aqoxy5G04249 Aquilegia oxysepala HOM05D007265 ORTHO05D009118 2.1e-18 95.1 61 78.7
HanXRQChr16g0521331 Helianthus annuus HOM05D007265 ORTHO05D009118 2.8e-18 94.7 64 71.9
BcaNung06658 Brassica carinata HOM05D007265 ORTHO05D009118 4.7e-18 94.0 48 100.0
Manes.01G244801 Manihot esculenta HOM05D007265 ORTHO05D009118 4.7e-18 94.0 63 76.2
Sc01g0002550 Simmondsia chinensis HOM05D007265 ORTHO05D009118 4.7e-18 94.0 57 77.2
Manes.05G021500 Manihot esculenta HOM05D007265 ORTHO05D009118 6.1e-18 93.6 63 74.6
HanXRQChr13g0423241 Helianthus annuus HOM05D007265 ORTHO05D009118 1.0e-17 92.8 64 70.3
Lsat_1_v5_gn_4_39661 Lactuca sativa HOM05D007265 ORTHO05D009118 1.0e-17 92.8 58 75.9
ClCG06G002640 Citrullus lanatus HOM05D007265 ORTHO05D009118 1.8e-17 92.0 56 82.1
SalBow5G3999 Salvia bowleyana HOM05D002476 ORTHO05D002652 2.3e-17 91.7 55 85.5
Glyma.03G258500 Glycine max HOM05D007265 ORTHO05D009118 4.0e-17 90.9 63 71.4
Glyma.19G257100 Glycine max HOM05D007265 ORTHO05D009118 4.0e-17 90.9 63 71.4
Oeu007878.1 Olea europaea HOM05D007265 ORTHO05D009118 5.2e-17 90.5 55 83.6
Phvul.006G114500 Phaseolus vulgaris HOM05D007265 ORTHO05D009118 5.2e-17 90.5 63 71.4
Medtr7g117700 Medicago truncatula HOM05D007265 ORTHO05D009118 6.8e-17 90.1 63 71.4
Os05g0542100 Oryza sativa ssp. japonica HOM05D007265 ORTHO05D009118 6.8e-17 90.1 64 70.3
MSTRG.17355 Avicennia marina HOM05D007265 ORTHO05D009118 8.9e-17 89.7 55 83.6
arahy.Tifrunner.gnm1.ann1.4N8QKH Arachis hypogaea HOM05D007265 ORTHO05D009118 1.2e-16 89.4 61 73.8
CANSAT56G3703 Cannabis sativa HOM05D007265 ORTHO05D009118 1.5e-16 89.0 63 73.0
Hund16719 Selenicereus undatus HOM05D007265 ORTHO05D009118 1.5e-16 89.0 81 56.8
Hund27188 Selenicereus undatus HOM05D007265 ORTHO05D009118 1.5e-16 89.0 57 77.2
EL10Ac1g00247 Beta vulgaris HOM05D007265 ORTHO05D009118 2.0e-16 88.6 55 74.5
COL.COLO4_06226 Corchorus olitorius HOM05D007265 ORTHO05D009118 2.0e-16 88.6 54 83.3
Ca_09518_v3 Cicer arietinum L. HOM05D007265 ORTHO05D009118 2.6e-16 88.2 63 68.3
Nn3g18955 Nelumbo nucifera HOM05D007265 ORTHO05D009118 2.6e-16 88.2 64 75.0
arahy.Tifrunner.gnm1.ann1.PH1UFL Arachis hypogaea HOM05D007265 ORTHO05D009118 3.4e-16 87.8 60 73.3
Lsat_1_v5_gn_3_126500 Lactuca sativa HOM05D007265 ORTHO05D009118 7.5e-16 86.7 57 73.7
Lj1g0009143 Lotus japonicus HOM05D007265 ORTHO05D009118 1.7e-15 85.5 63 66.7
vmacro13170 Vaccinium macrocarpon HOM05D007265 ORTHO05D009118 1.7e-15 85.5 58 74.1
Lalb_Chr18g0044541 Lupinus albus HOM05D007265 ORTHO05D009118 2.8e-15 84.7 63 69.8
AUR62004508 Chenopodium quinoa HOM05D007265 ORTHO05D009118 3.7e-15 84.3 54 75.9
Gorai.008G126400 Gossypium raimondii HOM05D007265 ORTHO05D009118 1.4e-14 82.4 55 74.5
MBI07_g24775_MAGBIO Magnolia biondii HOM05D007265 ORTHO05D009118 1.4e-14 82.4 60 71.7
Ah.05g179400 Amaranthus hybridus HOM05D007265 ORTHO05D009118 2.4e-14 81.6 57 70.2
Lalb_Chr15g0076341 Lupinus albus HOM05D007265 ORTHO05D009118 7.0e-14 80.1 63 65.1
Psat3g174080 Pisum sativum HOM05D007265 ORTHO05D009118 1.2e-13 79.3 56 69.6
Rhsim01G0174400 Rhododendron simsii HOM05D007265 ORTHO05D009118 1.2e-13 79.3 80 57.5
Psat3g001880 Pisum sativum HOM05D007265 ORTHO05D009118 1.0e-12 76.3 52 73.1
Gorai.007G109700 Gossypium raimondii HOM05D007265 ORTHO05D009118 5.0e-12 73.9 45 82.2
Os01g0705500 Oryza sativa ssp. japonica HOM05D007265 ORTHO05D009118 1.9e-11 72.0 51 76.5
BcaC03g16694 Brassica carinata HOM05D007265 ORTHO05D009118 4.4e-08 60.8 42 81.0
Nitab4.5_0010712g0030 Nicotiana tabacum HOM05D007265 ORTHO05D009118 4.4e-08 60.8 37 78.4
RcHm_v2.0_Chr1g0360081 Rosa chinensis HOM05D000497 ORTHO05D013080 4.4e-08 60.8 37 78.4
SGA_v2.0_scaffold232G43548 Striga asiatica HOM05D007265 ORTHO05D009118 1.3e-07 59.3 37 78.4
AUR62016412 Chenopodium quinoa HOM05D007265 ORTHO05D009118 1.1e-06 56.2 63 47.6
TAR375G0162 Trochodendron aralioides HOM05D007265 ORTHO05D009118 1.1e-06 56.2 45 73.3
Mapoly0142s0011 Marchantia polymorpha HOM05D059347 ORTHO05D043981 4.1e-06 54.3 57 40.4


User provided reference genes

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