Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C04p01320 Brassica napus HOM05D004242 ORTHO05D004349 3.8e-136 488.8 384 100.0
BolC4t21785H Brassica oleracea HOM05D004242 ORTHO05D004349 2.8e-131 472.6 384 98.2
BraA05t19116Z Brassica rapa HOM05D004242 ORTHO05D004349 5.5e-119 431.8 403 82.6
A05p01160 Brassica napus HOM05D004242 ORTHO05D004349 2.3e-117 426.4 403 84.9
BcaC02g12660 Brassica carinata HOM05D004242 ORTHO05D004349 2.6e-116 422.9 245 100.0
BcaC02g12659 Brassica carinata HOM05D004242 ORTHO05D004349 1.6e-110 403.7 384 76.8
BcaC02g07046 Brassica carinata HOM05D004242 ORTHO05D004349 4.9e-91 339.0 387 84.8
Sp4g28680 Schrenkiella parvula HOM05D004242 ORTHO05D004349 2.3e-88 330.1 390 77.4
A04p34530 Brassica napus HOM05D004242 ORTHO05D004349 7.5e-84 315.1 389 71.2
C04p72290 Brassica napus HOM05D004242 ORTHO05D004349 1.7e-83 313.9 387 71.3
Thhalv10001731m.g Eutrema salsugineum HOM05D004242 ORTHO05D004349 3.7e-83 312.8 397 72.0
BolC4t28717H Brassica oleracea HOM05D004242 ORTHO05D004349 4.9e-83 312.4 387 71.3
AL4G46060 Arabidopsis lyrata HOM05D004242 ORTHO05D004349 9.5e-79 298.1 404 69.6
BraA04t18910Z Brassica rapa HOM05D004242 ORTHO05D004349 5.8e-76 288.9 389 70.4
CARHR141970 Cardamine hirsuta HOM05D004242 ORTHO05D004349 5.4e-74 282.3 243 77.4
AT2G46630 Arabidopsis thaliana HOM05D004242 ORTHO05D004349 3.5e-65 253.1 412 60.2
Carub.0004s2934 Capsella rubella HOM05D004242 ORTHO05D004349 5.6e-63 245.7 230 73.5
THA.LOC104817612 Tarenaya hassleriana HOM05D004242 ORTHO05D004349 9.6e-39 165.2 251 55.4
Aa31LG1G28030 Aethionema arabicum HOM05D004242 ORTHO05D004349 2.9e-35 153.7 246 44.3
Thhalv10006210m.g Eutrema salsugineum HOM05D004242 ORTHO05D004349 7.9e-25 119.0 238 41.2
Sp5g01480 Schrenkiella parvula HOM05D004242 ORTHO05D004349 8.8e-24 115.5 235 38.3
Gohir.D11G103800 Gossypium hirsutum HOM05D004242 ORTHO05D004349 1.8e-21 107.8 228 37.7
Gorai.007G111100 Gossypium raimondii HOM05D004242 ORTHO05D004349 1.8e-21 107.8 228 37.7
FAN03G1939 Fragaria x ananassa HOM05D004242 ORTHO05D004349 3.1e-21 107.1 281 33.1
FAN22G2040 Fragaria x ananassa HOM05D004242 ORTHO05D004349 4.1e-21 106.7 279 33.3
Gohir.A11G099300 Gossypium hirsutum HOM05D004242 ORTHO05D004349 5.3e-21 106.3 228 36.8
BcaC07g42602 Brassica carinata HOM05D004242 ORTHO05D004349 9.1e-21 105.5 188 41.0
RcHm_v2.0_Chr3g0484701 Rosa chinensis HOM05D004242 ORTHO05D004349 1.0e-19 102.1 274 31.8
RcHm_v2.0_Chr1g0360631 Rosa chinensis HOM05D004242 ORTHO05D004349 1.7e-19 101.3 277 32.1
C08p36720 Brassica napus HOM05D004242 ORTHO05D004349 2.2e-19 100.9 234 35.5
BolC8t51254H Brassica oleracea HOM05D004242 ORTHO05D004349 2.2e-19 100.9 234 35.5
FAN10G0542 Fragaria x ananassa HOM05D004242 ORTHO05D004349 2.9e-19 100.5 284 33.8
FvH4_7g17260 Fragaria vesca HOM05D004242 ORTHO05D004349 3.8e-19 100.1 274 32.5
FAN06G4791 Fragaria x ananassa HOM05D004242 ORTHO05D004349 3.8e-19 100.1 274 32.5
FAN17G2081 Fragaria x ananassa HOM05D004242 ORTHO05D004349 5.0e-19 99.8 285 31.6
A09p53910 Brassica napus HOM05D004242 ORTHO05D004349 6.5e-19 99.4 232 35.8
BraA09t40807Z Brassica rapa HOM05D004242 ORTHO05D004349 6.5e-19 99.4 232 35.8
FAN01G2496 Fragaria x ananassa HOM05D004242 ORTHO05D004349 6.5e-19 99.4 288 31.6
FAN06G2582 Fragaria x ananassa HOM05D004242 ORTHO05D004349 1.1e-18 98.6 273 31.9
Haze_15699 Corylus avellana HOM05D004242 ORTHO05D004349 2.5e-18 97.4 216 41.2
FAN10G1700 Fragaria x ananassa HOM05D004242 ORTHO05D004349 3.2e-18 97.1 282 33.3
Duzib138G0794 Durio zibethinus HOM05D004242 ORTHO05D004349 5.5e-18 96.3 256 34.4
TWI14G0118 Tripterygium wilfordii HOM05D004242 ORTHO05D004349 7.2e-18 95.9 196 37.2
Sabra14G0075500 Salix brachista HOM05D004242 ORTHO05D004349 1.2e-17 95.1 253 34.8
Lj1g0015234 Lotus japonicus HOM05D004242 ORTHO05D004349 2.1e-17 94.4 257 31.1
Thecc.01G336900 Theobroma cacao HOM05D004242 ORTHO05D004349 2.1e-17 94.4 235 34.5
Rhsim07G0001600 Rhododendron simsii HOM05D004242 ORTHO05D004349 2.7e-17 94.0 244 35.2
TWI59G0661 Tripterygium wilfordii HOM05D004242 ORTHO05D004349 4.7e-17 93.2 192 33.9
Cfa003761 Carpinus fangiana HOM05D004242 ORTHO05D004349 6.1e-17 92.8 216 39.4
Glyma.19G258400 Glycine max HOM05D004242 ORTHO05D004349 6.1e-17 92.8 246 31.7
Peaxi162Scf00014g00294 Petunia axillaris HOM05D004242 ORTHO05D004349 6.1e-17 92.8 236 32.2
FAN12G0333 Fragaria x ananassa HOM05D004242 ORTHO05D004349 1.0e-16 92.0 281 30.6
Eucgr.D02643 Eucalyptus grandis HOM05D004242 ORTHO05D004349 1.4e-16 91.7 142 40.1
PGR031G2923 Punica granatum HOM05D004242 ORTHO05D004349 1.4e-16 91.7 123 48.0
Ciclev10019915m.g Citrus clementina HOM05D004242 ORTHO05D004349 1.8e-16 91.3 249 35.7
Duzib133G0806 Durio zibethinus HOM05D004242 ORTHO05D004349 1.8e-16 91.3 227 33.9
VMungo0540G1056 Vigna mungo HOM05D004242 ORTHO05D004349 1.8e-16 91.3 238 30.7
Ah.05g179200 Amaranthus hybridus HOM05D004242 ORTHO05D004349 2.3e-16 90.9 254 33.9
Gohir.D07G140400 Gossypium hirsutum HOM05D004242 ORTHO05D004349 2.3e-16 90.9 219 33.3
Gohir.A07G135500 Gossypium hirsutum HOM05D004242 ORTHO05D004349 3.0e-16 90.5 219 33.3
Nitab4.5_0000508g0190 Nicotiana tabacum HOM05D004242 ORTHO05D004349 3.0e-16 90.5 238 33.2
arahy.Tifrunner.gnm1.ann1.16GZH2 Arachis hypogaea HOM05D004242 ORTHO05D004349 3.9e-16 90.1 208 34.1
FvH4_4g01200 Fragaria vesca HOM05D004242 ORTHO05D004349 5.2e-16 89.7 281 30.6
CAN.G211.7 Capsicum annuum HOM05D004242 ORTHO05D004349 1.1e-15 88.6 254 30.3
Phvul.006G115800 Phaseolus vulgaris HOM05D004242 ORTHO05D004349 1.1e-15 88.6 238 32.8
Atru.chr5.733 Acer truncatum HOM05D004242 ORTHO05D004349 1.5e-15 88.2 258 40.3
arahy.Tifrunner.gnm1.ann1.1EJ222 Arachis hypogaea HOM05D004242 ORTHO05D004349 2.0e-15 87.8 215 34.0
Potri.014G102466 Populus trichocarpa HOM05D004242 ORTHO05D004349 2.0e-15 87.8 278 31.7
Prupe.2G193900 Prunus persica HOM05D004242 ORTHO05D004349 2.6e-15 87.4 266 38.7
Manes.01G267100 Manihot esculenta HOM05D004242 ORTHO05D004349 3.3e-15 87.0 246 35.0
Gorai.001G152400 Gossypium raimondii HOM05D004242 ORTHO05D004349 4.4e-15 86.7 235 31.9
Nitab4.5_0005697g0010 Nicotiana tabacum HOM05D004242 ORTHO05D004349 4.4e-15 86.7 236 32.6
Oeu004972.1 Olea europaea HOM05D004242 ORTHO05D004349 4.4e-15 86.7 241 32.8
PGSC0003DMG400007374 Solanum tuberosum HOM05D004242 ORTHO05D004349 4.4e-15 86.7 259 28.6
Actinidia25370 Actinidia chinensis HOM05D004242 ORTHO05D004349 5.7e-15 86.3 244 31.1
QL08p046281 Quercus lobata HOM05D004242 ORTHO05D004349 7.4e-15 85.9 265 32.1
Oeu042952.1 Olea europaea HOM05D004242 ORTHO05D004349 3.7e-14 83.6 242 32.6
Potri.002G175400 Populus trichocarpa HOM05D004242 ORTHO05D004349 6.3e-14 82.8 244 31.6
Cpa.g.sc144.11 Carica papaya HOM05D004242 ORTHO05D004349 1.1e-13 82.0 260 33.5
Glyma.03G259500 Glycine max HOM05D004242 ORTHO05D004349 1.1e-13 82.0 259 29.3
TPR.G4684 Trifolium pratense HOM05D004242 ORTHO05D004349 1.1e-13 82.0 257 29.2
Carub.0005s2862 Capsella rubella HOM05D004242 ORTHO05D004349 1.4e-13 81.6 233 33.9
Lsat_1_v5_gn_8_20301 Lactuca sativa HOM05D004242 ORTHO05D004349 1.8e-13 81.3 196 37.2
Medtr7g117980 Medicago truncatula HOM05D004242 ORTHO05D004349 1.8e-13 81.3 261 28.4
Solyc08g067370.1 Solanum lycopersicum HOM05D004242 ORTHO05D004349 3.1e-13 80.5 251 28.7
Ca_09531_v3 Cicer arietinum L. HOM05D004242 ORTHO05D004349 4.1e-13 80.1 239 29.3
Hma1.2p1_0309F.1_g120440 Hydrangea macrophylla HOM05D004242 ORTHO05D004349 4.1e-13 80.1 221 35.3
TAR339G0002 Trochodendron aralioides HOM05D004242 ORTHO05D004349 4.1e-13 80.1 238 37.4
Lsat_1_v5_gn_3_140940 Lactuca sativa HOM05D004242 ORTHO05D004349 7.0e-13 79.3 198 35.4
DCAR_002987 Daucus carota HOM05D004242 ORTHO05D004349 9.1e-13 79.0 202 35.6
Sopen08g021310 Solanum pennellii HOM05D004242 ORTHO05D004349 1.6e-12 78.2 252 29.0
CiPaw.02G043200 Carya illinoinensis HOM05D004242 ORTHO05D004349 2.0e-12 77.8 260 29.2
Lalb_Chr04g0261391 Lupinus albus HOM05D004242 ORTHO05D004349 2.0e-12 77.8 133 36.1
MBI13_g41464_MAGBIO Magnolia biondii HOM05D004242 ORTHO05D004349 2.6e-12 77.4 208 34.1
MSTRG.28279 Avicennia marina HOM05D004242 ORTHO05D004349 3.5e-12 77.0 227 33.0
CSS0040523 Camellia sinensis var. sinensis HOM05D004242 ORTHO05D004349 3.5e-12 77.0 184 36.4
Lj9P602T20 Lonicera japonica HOM05D004242 ORTHO05D004349 3.5e-12 77.0 238 30.7
Manes.05G019100 Manihot esculenta HOM05D004242 ORTHO05D004349 3.5e-12 77.0 245 32.2
CiPaw.02G042800 Carya illinoinensis HOM05D004242 ORTHO05D004349 5.9e-12 76.3 220 30.9
AUR62022719 Chenopodium quinoa HOM05D004242 ORTHO05D004349 7.7e-12 75.9 158 38.0
EL10Ac1g00218 Beta vulgaris HOM05D004242 ORTHO05D004349 1.0e-11 75.5 193 32.6
SGA_v2.0_scaffold98G29435 Striga asiatica HOM05D004242 ORTHO05D004349 1.0e-11 75.5 216 33.8
arahy.Tifrunner.gnm1.ann1.6W400J Arachis hypogaea HOM05D004242 ORTHO05D004349 1.3e-11 75.1 137 35.0
Dinv32623 Davidia involucrata HOM05D004242 ORTHO05D004349 2.2e-11 74.3 127 35.4
CSS0005133 Camellia sinensis var. sinensis HOM05D004242 ORTHO05D004349 2.9e-11 73.9 220 32.7
CSS0009998 Camellia sinensis var. sinensis HOM05D004242 ORTHO05D004349 2.9e-11 73.9 220 32.7
CiPaw.02G043100 Carya illinoinensis HOM05D004242 ORTHO05D004349 6.5e-11 72.8 110 40.0
CiPaw.02G043000 Carya illinoinensis HOM05D004242 ORTHO05D004349 8.5e-11 72.4 125 35.2
Sed0017381 Sechium edule HOM05D004242 ORTHO05D004349 8.5e-11 72.4 225 30.7
AUR62004535 Chenopodium quinoa HOM05D004242 ORTHO05D004349 1.1e-10 72.0 278 29.5
Lalb_Chr15g0076401 Lupinus albus HOM05D004242 ORTHO05D004349 1.5e-10 71.6 207 28.5
Aqoxy2G02545 Aquilegia oxysepala HOM05D004242 ORTHO05D004349 1.9e-10 71.2 112 58.9
arahy.Tifrunner.gnm1.ann1.YBIH8U Arachis hypogaea HOM05D004242 ORTHO05D004349 3.2e-10 70.5 137 35.0
Sed0006480 Sechium edule HOM05D004242 ORTHO05D004349 3.2e-10 70.5 238 34.0
MSTRG.20915 Avicennia marina HOM05D004242 ORTHO05D004349 4.2e-10 70.1 212 34.4
Hma1.2p1_0180F.1_g079790 Hydrangea macrophylla HOM05D004242 ORTHO05D004349 4.2e-10 70.1 202 31.7
ClCG06G002780 Citrullus lanatus HOM05D004242 ORTHO05D004349 5.5e-10 69.7 245 30.6
PSO761G0055 Papaver somniferum HOM05D004242 ORTHO05D004349 1.6e-09 68.2 233 34.8
PSO210G2709 Papaver somniferum HOM05D004242 ORTHO05D004349 2.1e-09 67.8 234 29.5
Sed0022787 Sechium edule HOM05D004242 ORTHO05D004349 2.7e-09 67.4 218 31.2
unitig_8.g4995 Utricularia gibba HOM05D004242 ORTHO05D004349 2.7e-09 67.4 235 30.2
SEGI_20460 Sequoiadendron giganteum HOM05D004242 ORTHO05D004349 4.7e-09 66.6 130 33.8
Dinv34239 Davidia involucrata HOM05D004242 ORTHO05D004349 6.1e-09 66.2 123 37.4
Psat3g001320 Pisum sativum HOM05D004242 ORTHO05D004349 1.8e-08 64.7 272 25.0
BcaC02g12662 Brassica carinata HOM05D004242 ORTHO05D004349 3.0e-08 63.9 175 58.9
CsaV3_3G007800 Cucumis sativus L. HOM05D004242 ORTHO05D004349 4.0e-08 63.5 230 31.7
CsaV3_6G008950 Cucumis sativus L. HOM05D004242 ORTHO05D004349 5.2e-08 63.2 251 28.3
Sc01g0002380 Simmondsia chinensis HOM05D004242 ORTHO05D004349 8.8e-08 62.4 195 30.3
MELO3C005996.2 Cucumis melo HOM05D004242 ORTHO05D004349 2.6e-07 60.8 245 28.6
Nn4g22396 Nelumbo nucifera HOM05D004242 ORTHO05D004349 2.6e-07 60.8 247 33.6
Nitab4.5_0000017g0170 Nicotiana tabacum HOM05D006278 ORTHO05D007526 7.5e-07 59.3 134 32.1
Nitab4.5_0004768g0010 Nicotiana tabacum HOM05D006278 ORTHO05D007526 1.3e-06 58.5 111 35.1
Glyma.07G052632 Glycine max HOM05D004242 ORTHO05D004349 1.7e-06 58.2 255 30.2
Phvul.010G116800 Phaseolus vulgaris HOM05D004242 ORTHO05D004349 1.7e-06 58.2 168 30.4
Dinv18906 Davidia involucrata HOM05D004242 ORTHO05D004349 2.2e-06 57.8 113 38.9
Dinv36098 Davidia involucrata HOM05D006278 ORTHO05D007526 2.8e-06 57.4 109 33.9
ECA236G3302 Erigeron canadensis HOM05D004242 ORTHO05D004349 2.8e-06 57.4 222 36.9
GSVIVG01027399001 Vitis vinifera HOM05D004242 ORTHO05D004349 2.8e-06 57.4 228 31.1
ClCG05G000600 Citrullus lanatus HOM05D004242 ORTHO05D004349 3.7e-06 57.0 118 33.1
CsaV3_3G007790 Cucumis sativus L. HOM05D004242 ORTHO05D004349 3.7e-06 57.0 245 28.2
SEGI_05135 Sequoiadendron giganteum HOM05D004242 ORTHO05D004349 4.8e-06 56.6 122 33.6
PGSC0003DMG400005375 Solanum tuberosum HOM05D006278 ORTHO05D007526 4.8e-06 56.6 119 33.6
Sed0012028 Sechium edule HOM05D004242 ORTHO05D004349 6.3e-06 56.2 212 28.3
MELO3C005995.2 Cucumis melo HOM05D004242 ORTHO05D004349 8.2e-06 55.8 230 27.4
Peaxi162Scf00303g00043 Petunia axillaris HOM05D006278 ORTHO05D007526 8.2e-06 55.8 111 34.2


User provided reference genes

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