Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C04p01070 Brassica napus HOM05D006413 ORTHO05D007722 0.0e+00 1348.2 699 100.0
A05p00920 Brassica napus HOM05D006413 ORTHO05D007722 0.0e+00 1268.8 700 94.9
BolC4t21760H Brassica oleracea HOM05D006413 ORTHO05D007722 0.0e+00 1236.5 725 90.8
BcaC02g12635 Brassica carinata HOM05D006413 ORTHO05D007722 0.0e+00 1149.8 694 89.2
Thhalv10001331m.g Eutrema salsugineum HOM05D006413 ORTHO05D007722 0.0e+00 1140.9 742 83.4
Sp4g28940 Schrenkiella parvula HOM05D006413 ORTHO05D007722 0.0e+00 1127.1 730 83.7
BraA05t19093Z Brassica rapa HOM05D006413 ORTHO05D007722 0.0e+00 1086.6 624 92.3
Carub.0004s2964 Capsella rubella HOM05D006413 ORTHO05D007722 0.0e+00 1077.8 736 79.8
AL4G46380 Arabidopsis lyrata HOM05D006413 ORTHO05D007722 2.4e-306 1055.0 744 78.2
CARHR142270 Cardamine hirsuta HOM05D006413 ORTHO05D007722 4.6e-305 1050.8 729 77.8
AT2G46915 Arabidopsis thaliana HOM05D006413 ORTHO05D007722 7.3e-303 1043.5 739 78.1
Aa31LG1G28280 Aethionema arabicum HOM05D006413 ORTHO05D007722 1.7e-299 1032.3 715 77.3
THA.LOC104802107 Tarenaya hassleriana HOM05D006413 ORTHO05D007722 1.9e-266 922.5 745 67.9
QL05p084380 Quercus lobata HOM05D006413 ORTHO05D007722 6.4e-198 694.9 654 58.6
COL.COLO4_23085 Corchorus olitorius HOM05D006413 ORTHO05D007722 1.1e-194 684.1 751 52.9
Duzib138G1460 Durio zibethinus HOM05D006413 ORTHO05D007722 1.8e-192 676.8 692 55.5
Cfa002153 Carpinus fangiana HOM05D006413 ORTHO05D007722 8.9e-192 674.5 740 53.6
Potri.002G183900 Populus trichocarpa HOM05D006413 ORTHO05D007722 3.4e-191 672.5 661 57.0
TWI14G0709 Tripterygium wilfordii HOM05D006413 ORTHO05D007722 3.4e-191 672.5 669 55.9
Thecc.01G329000 Theobroma cacao HOM05D006413 ORTHO05D007722 9.2e-189 664.5 742 52.8
Gohir.D12G122400 Gossypium hirsutum HOM05D006413 ORTHO05D007722 2.1e-188 663.3 741 52.4
Manes.01G237000 Manihot esculenta HOM05D006413 ORTHO05D007722 3.5e-188 662.5 674 55.3
Gorai.008G133200 Gossypium raimondii HOM05D006413 ORTHO05D007722 1.0e-187 661.0 741 52.1
Gohir.A12G118600 Gossypium hirsutum HOM05D006413 ORTHO05D007722 2.3e-187 659.8 741 51.8
Atru.chr5.817 Acer truncatum HOM05D006413 ORTHO05D007722 3.0e-187 659.4 731 51.8
Prupe.3G022900 Prunus persica HOM05D006413 ORTHO05D007722 4.3e-186 655.6 730 52.5
MD17G1162400 Malus domestica HOM05D006413 ORTHO05D007722 5.6e-186 655.2 730 52.6
Phvul.005G185400 Phaseolus vulgaris HOM05D006413 ORTHO05D007722 5.6e-186 655.2 660 53.9
FAN09G4880 Fragaria x ananassa HOM05D006413 ORTHO05D007722 3.6e-185 652.5 732 51.9
Glyma.13G372900 Glycine max HOM05D006413 ORTHO05D007722 1.1e-184 651.0 659 54.8
FAN02G2312 Fragaria x ananassa HOM05D006413 ORTHO05D007722 8.9e-184 647.9 755 50.7
GSVIVG01027488001 Vitis vinifera HOM05D006413 ORTHO05D007722 2.0e-183 646.7 744 53.5
arahy.Tifrunner.gnm1.ann1.JWHJ24 Arachis hypogaea HOM05D006413 ORTHO05D007722 5.8e-183 645.2 676 54.0
Lj5g0015604 Lotus japonicus HOM05D006413 ORTHO05D007722 7.6e-183 644.8 670 53.1
Lj3g0007654 Lotus japonicus HOM05D006413 ORTHO05D007722 1.7e-182 643.7 670 53.0
VMungo1080G0934 Vigna mungo HOM05D006413 ORTHO05D007722 4.1e-181 639.0 663 53.2
MELO3C024283.2 Cucumis melo HOM05D006413 ORTHO05D007722 1.6e-180 637.1 712 51.4
RcHm_v2.0_Chr2g0149491 Rosa chinensis HOM05D006413 ORTHO05D007722 3.0e-179 632.9 668 53.7
TAR629G2159 Trochodendron aralioides HOM05D006413 ORTHO05D007722 3.0e-179 632.9 669 55.3
Cpa.g.sc57.58 Carica papaya HOM05D006413 ORTHO05D007722 5.6e-178 628.6 661 56.4
TPR.G31784 Trifolium pratense HOM05D006413 ORTHO05D007722 5.8e-175 618.6 650 53.1
Psat5g305280 Pisum sativum HOM05D006413 ORTHO05D007722 1.7e-174 617.1 651 53.5
FvH4_6g36970 Fragaria vesca HOM05D006413 ORTHO05D007722 4.9e-174 615.5 733 50.1
Medtr2g101420 Medicago truncatula HOM05D006413 ORTHO05D007722 1.1e-173 614.4 659 52.0
CsaV3_7G033700 Cucumis sativus L. HOM05D006413 ORTHO05D007722 3.2e-173 612.8 684 51.5
Nn1g00502 Nelumbo nucifera HOM05D006413 ORTHO05D007722 4.0e-168 595.9 738 49.1
Lalb_Chr24g0392741 Lupinus albus HOM05D006413 ORTHO05D007722 1.1e-162 577.8 645 49.8
Ca_30995_v3 Cicer arietinum L. HOM05D006413 ORTHO05D007722 2.1e-161 573.5 583 54.0
Ca_00994_v3 Cicer arietinum L. HOM05D006413 ORTHO05D007722 4.8e-161 572.4 604 53.0
Rhsim01G0182400 Rhododendron simsii HOM05D006413 ORTHO05D007722 8.1e-161 571.6 730 47.1
Cc11_g00050 Coffea canephora HOM05D006413 ORTHO05D007722 1.8e-160 570.5 673 49.6
AUR62014504 Chenopodium quinoa HOM05D006413 ORTHO05D007722 1.2e-159 567.8 664 49.4
Aqoxy5G04399 Aquilegia oxysepala HOM05D006413 ORTHO05D007722 1.5e-159 567.4 672 49.6
Eucgr.E00011 Eucalyptus grandis HOM05D006413 ORTHO05D007722 2.2e-158 563.5 645 49.0
ECA246G2509 Erigeron canadensis HOM05D006413 ORTHO05D007722 2.4e-157 560.1 637 51.0
Lsat_1_v5_gn_5_42660 Lactuca sativa HOM05D006413 ORTHO05D007722 2.7e-156 556.6 637 49.9
SGA_v2.0_scaffold12G06253 Striga asiatica HOM05D006413 ORTHO05D007722 8.7e-155 551.6 732 44.8
Migut.G00788 Erythranthe guttata HOM05D006413 ORTHO05D007722 1.9e-154 550.4 675 47.6
ClCG09G001640 Citrullus lanatus HOM05D006413 ORTHO05D007722 3.3e-154 549.7 666 48.8
Sc26g0002030 Simmondsia chinensis HOM05D006413 ORTHO05D007722 9.6e-154 548.1 661 47.0
CANSAT01G2278 Cannabis sativa HOM05D006413 ORTHO05D007722 2.1e-153 547.0 659 48.4
CAN.G317.7 Capsicum annuum HOM05D006413 ORTHO05D007722 8.2e-153 545.0 654 48.6
HanXRQChr12g0379901 Helianthus annuus HOM05D006413 ORTHO05D007722 1.8e-152 543.9 641 49.5
Sed0002155 Sechium edule HOM05D006413 ORTHO05D007722 2.4e-152 543.5 592 52.9
PSO782G4045 Papaver somniferum HOM05D006413 ORTHO05D007722 2.0e-151 540.4 610 51.1
Sabra02G0131800 Salix brachista HOM05D006413 ORTHO05D007722 3.4e-151 539.7 796 45.6
DCAR_001546 Daucus carota HOM05D006413 ORTHO05D007722 8.4e-150 535.0 650 48.9
MBI12_g23070_MAGBIO Magnolia biondii HOM05D006413 ORTHO05D007722 8.4e-150 535.0 736 46.2
AUR62038031 Chenopodium quinoa HOM05D006413 ORTHO05D007722 1.9e-149 533.9 705 45.7
MSTRG.12126 Avicennia marina HOM05D006413 ORTHO05D007722 2.5e-149 533.5 662 47.0
Sopen03g012060 Solanum pennellii HOM05D006413 ORTHO05D007722 4.2e-149 532.7 657 48.2
Ah.05g177080 Amaranthus hybridus HOM05D006413 ORTHO05D007722 2.7e-148 530.0 669 46.0
Os06g0104000 Oryza sativa ssp. japonica HOM05D006413 ORTHO05D007722 1.5e-146 524.2 666 46.2
EL10Ac1g00655 Beta vulgaris HOM05D006413 ORTHO05D007722 4.3e-146 522.7 631 47.5
ATR0579G084 Amborella trichopoda HOM05D006413 ORTHO05D007722 3.7e-145 519.6 608 50.7
FAN14G2652 Fragaria x ananassa HOM05D006413 ORTHO05D007722 4.8e-145 519.2 699 45.4
SEGI_13405 Sequoiadendron giganteum HOM05D006413 ORTHO05D007722 2.0e-143 513.8 714 44.3
PSO063G3388 Papaver somniferum HOM05D006413 ORTHO05D007722 2.2e-142 510.4 506 54.3
HPP92_025405 Vanilla planifolia HOM05D006413 ORTHO05D007722 7.9e-140 501.9 671 44.7
Zm00001eb268520 Zea mays HOM05D006413 ORTHO05D007722 4.3e-138 496.1 656 45.0
Lj9A544G35 Lonicera japonica HOM05D006413 ORTHO05D007722 1.7e-137 494.2 546 51.5
Actinidia28080 Actinidia chinensis HOM05D006413 ORTHO05D007722 8.2e-137 491.9 590 50.0
PGR042G2300 Punica granatum HOM05D006413 ORTHO05D007722 7.7e-135 485.3 635 45.0
Nitab4.5_0000911g0040 Nicotiana tabacum HOM05D006413 ORTHO05D007722 6.5e-134 482.3 730 43.7
Ciclev10020349m.g Citrus clementina HOM05D006413 ORTHO05D007722 6.3e-129 465.7 398 61.1
Dinv34265 Davidia involucrata HOM05D006413 ORTHO05D007722 6.7e-123 445.7 488 52.3
Pp3c4_17360 Physcomitrium patens HOM05D006413 ORTHO05D007722 1.6e-116 424.5 657 39.3
Nitab4.5_0000001g0010 Nicotiana tabacum HOM05D006413 ORTHO05D007722 3.4e-106 390.2 760 38.4
Hund26913 Selenicereus undatus HOM05D006413 ORTHO05D007722 5.9e-103 379.4 484 44.4
Mapoly0083s0051 Marchantia polymorpha HOM05D006413 ORTHO05D007722 9.5e-101 372.1 664 36.9
Psat2g176480 Pisum sativum HOM05D006413 ORTHO05D007722 2.2e-97 360.9 376 52.9
CiPaw.02G050700 Carya illinoinensis HOM05D006413 ORTHO05D007722 1.1e-93 348.6 378 53.4
SMO358G0223 Selaginella moellendorffii HOM05D006413 ORTHO05D007722 2.8e-92 344.0 497 39.2
Oeu059793.1 Olea europaea HOM05D006413 ORTHO05D007722 1.2e-74 285.4 402 44.3
Glyma.19G019600 Glycine max HOM05D006413 ORTHO05D007722 8.6e-70 269.2 311 51.1
CDE12G0173 Ceratophyllum demersum HOM05D006413 ORTHO05D007722 2.4e-67 261.2 354 45.2
vmacro12628 Vaccinium macrocarpon HOM05D006413 ORTHO05D007722 4.3e-53 213.8 525 33.3
MD05G1207200 Malus domestica HOM05D006413 ORTHO05D007722 3.1e-51 207.6 329 45.9
ATR0579G174 Amborella trichopoda HOM05D006413 ORTHO05D007722 5.1e-46 190.3 261 43.3
Hma1.2p1_0074F.1_g038950 Hydrangea macrophylla HOM05D006413 ORTHO05D007722 9.6e-45 186.0 191 52.9
CSS0011223 Camellia sinensis var. sinensis HOM05D006413 ORTHO05D007722 2.2e-41 174.9 158 60.8
vmacro12630 Vaccinium macrocarpon HOM05D006413 ORTHO05D007722 3.0e-38 164.5 197 48.7
CDE12G0027 Ceratophyllum demersum HOM05D006413 ORTHO05D007722 8.2e-36 156.4 217 47.0
Hund26914 Selenicereus undatus HOM05D006413 ORTHO05D007722 3.1e-35 154.5 243 46.1
CiPaw.02G051000 Carya illinoinensis HOM05D006413 ORTHO05D007722 9.0e-35 152.9 157 52.2
CSS0044831 Camellia sinensis var. sinensis HOM05D006413 ORTHO05D007722 7.1e-32 143.3 155 51.0
CSS0048009 Camellia sinensis var. sinensis HOM05D006413 ORTHO05D007722 2.1e-31 141.7 155 51.0
CiPaw.02G050800 Carya illinoinensis HOM05D006413 ORTHO05D007722 1.1e-29 136.0 103 67.0
Glyma.15G001000 Glycine max HOM05D006413 ORTHO05D007722 3.3e-29 134.4 97 72.2
PGSC0003DMG400005503 Solanum tuberosum HOM05D006413 ORTHO05D007722 1.1e-27 129.4 159 47.2
Psat3g197040 Pisum sativum HOM05D006413 ORTHO05D007722 2.9e-25 121.3 137 47.4
CSS0006840 Camellia sinensis var. sinensis HOM05D006413 ORTHO05D007722 3.8e-25 120.9 90 68.9
CSS0032487 Camellia sinensis var. sinensis HOM05D006413 ORTHO05D007722 3.8e-25 120.9 90 68.9
vmacro12629 Vaccinium macrocarpon HOM05D006413 ORTHO05D007722 2.2e-20 105.1 85 61.2
CSS0016033 Camellia sinensis var. sinensis HOM05D006413 ORTHO05D007722 7.7e-18 96.7 74 66.2
CSS0017802 Camellia sinensis var. sinensis HOM05D006413 ORTHO05D007722 7.7e-18 96.7 74 66.2
Psat5g292640 Pisum sativum HOM05D006413 ORTHO05D007722 1.8e-14 85.5 57 73.7
Solyc03g058437.1 Solanum lycopersicum HOM05D006413 ORTHO05D007722 6.3e-12 77.0 52 73.1
CSS0026125 Camellia sinensis var. sinensis HOM05D006413 ORTHO05D007722 4.1e-11 74.3 174 33.3
CSS0033391 Camellia sinensis var. sinensis HOM05D006413 ORTHO05D007722 4.1e-11 74.3 174 33.3
Hma1.2p1_0074F.1_g038990 Hydrangea macrophylla HOM05D006413 ORTHO05D007722 1.0e-09 69.7 129 38.0
DCAR_000972 Daucus carota HOM05D002735 ORTHO05D003048 8.5e-09 66.6 206 24.3
Aqoxy5G03066 Aquilegia oxysepala HOM05D002735 ORTHO05D003048 1.9e-08 65.5 227 22.5
CAN.G904.24 Capsicum annuum HOM05D002735 ORTHO05D003048 3.2e-08 64.7 231 23.4
Cre07.g318350 Chlamydomonas reinhardtii HOM05D002735 ORTHO05D003048 3.2e-08 64.7 251 24.7
MCO15G689 Micromonas commoda HOM05D002735 ORTHO05D003048 3.2e-08 64.7 242 26.9
Cre17.g719876 Chlamydomonas reinhardtii HOM05D040268 ORTHO05D007722 4.2e-08 64.3 136 28.7
Eucgr.G01926 Eucalyptus grandis HOM05D002735 ORTHO05D003048 5.5e-08 63.9 224 23.7
Cre17.g719771 Chlamydomonas reinhardtii HOM05D040268 ORTHO05D007722 7.2e-08 63.5 136 28.7
COL.COLO4_13386 Corchorus olitorius HOM05D002735 ORTHO05D003048 1.6e-07 62.4 230 25.2
THA.LOC104802361 Tarenaya hassleriana HOM05D002735 ORTHO05D003048 1.6e-07 62.4 223 22.9
Potri.014G144500 Populus trichocarpa HOM05D002735 ORTHO05D003048 2.1e-07 62.0 224 22.8
Manes.11G075900 Manihot esculenta HOM05D002735 ORTHO05D003048 2.7e-07 61.6 223 24.2
Os11g0528400 Oryza sativa ssp. japonica HOM05D002735 ORTHO05D003048 2.7e-07 61.6 241 25.7
Oeu035386.1 Olea europaea HOM05D002735 ORTHO05D003048 4.7e-07 60.8 230 22.6
PGR142G4442 Punica granatum HOM05D002735 ORTHO05D003048 4.7e-07 60.8 231 24.7
SMO118G0348 Selaginella moellendorffii HOM05D002735 ORTHO05D003048 4.7e-07 60.8 230 22.6
Duzib264G0596 Durio zibethinus HOM05D002735 ORTHO05D003048 6.1e-07 60.5 231 23.4
HanXRQChr07g0198011 Helianthus annuus HOM05D002735 ORTHO05D003048 6.1e-07 60.5 227 22.9
C02p06500 Brassica napus HOM05D002735 ORTHO05D003048 8.0e-07 60.1 236 22.5
BolC2t06597H Brassica oleracea HOM05D002735 ORTHO05D003048 8.0e-07 60.1 236 22.5
BraA02t05199Z Brassica rapa HOM05D002735 ORTHO05D003048 8.0e-07 60.1 236 22.5
AagrBONN_evm.TU.Sc2ySwM_228.3599 Anthoceros agrestis HOM05D002735 ORTHO05D003048 1.0e-06 59.7 257 21.4
A02p02270 Brassica napus HOM05D002735 ORTHO05D003048 1.0e-06 59.7 236 22.5
HanXRQChr14g0451411 Helianthus annuus HOM05D002735 ORTHO05D003048 1.0e-06 59.7 227 21.6
Os12g0479900 Oryza sativa ssp. japonica HOM05D002735 ORTHO05D003048 1.0e-06 59.7 222 25.2
Sc16g0003150 Simmondsia chinensis HOM05D002735 ORTHO05D003048 1.0e-06 59.7 224 23.7
AT5G13940 Arabidopsis thaliana HOM05D002735 ORTHO05D003048 1.4e-06 59.3 236 22.9
Thhalv10015781m.g Eutrema salsugineum HOM05D002735 ORTHO05D003048 1.4e-06 59.3 241 21.2
CARHR199490 Cardamine hirsuta HOM05D002735 ORTHO05D003048 1.8e-06 58.9 229 22.3
vmacro18385 Vaccinium macrocarpon HOM05D002735 ORTHO05D003048 2.3e-06 58.5 223 20.6
RcHm_v2.0_Chr2g0176571 Rosa chinensis HOM05D002735 ORTHO05D003048 3.0e-06 58.2 223 22.0
Peaxi162Scf00573g00011 Petunia axillaris HOM05D002735 ORTHO05D003048 3.9e-06 57.8 231 21.2
PGR042G0649 Punica granatum HOM05D002735 ORTHO05D003048 3.9e-06 57.8 231 22.5
AL6G24590 Arabidopsis lyrata HOM05D002735 ORTHO05D003048 5.2e-06 57.4 236 22.9
PGSC0003DMG400021294 Solanum tuberosum HOM05D002735 ORTHO05D003048 6.7e-06 57.0 231 21.2


User provided reference genes

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