Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C04p01000 Brassica napus HOM05D013471 ORTHO05D015349 0.0e+00 1090.5 551 100.0
BcaC02g12621 Brassica carinata HOM05D013471 ORTHO05D015349 2.5e-274 948.3 552 89.3
BcaC02g12825 Brassica carinata HOM05D013471 ORTHO05D015349 6.3e-217 757.7 548 74.5
BraA05t19086Z Brassica rapa HOM05D013471 ORTHO05D015349 3.6e-204 715.3 550 72.7
BolC4t21715H Brassica oleracea HOM05D013471 ORTHO05D015349 6.3e-201 704.5 548 70.8
A05p00830 Brassica napus HOM05D013471 ORTHO05D015349 4.7e-196 688.3 550 70.7
BcaC02g12596 Brassica carinata HOM05D013471 ORTHO05D015349 1.8e-195 686.4 545 70.1
BolC4t21753H Brassica oleracea HOM05D013471 ORTHO05D015349 4.3e-189 665.2 325 99.1
BcaC02g12610 Brassica carinata HOM05D013471 ORTHO05D015349 1.0e-182 644.0 548 67.3
BcaB02g09550 Brassica carinata HOM05D013471 ORTHO05D015349 3.3e-165 585.9 424 74.1
BolC4t21738H Brassica oleracea HOM05D013471 ORTHO05D015349 1.2e-159 567.4 430 72.3
AL4G45290 Arabidopsis lyrata HOM05D013471 ORTHO05D015349 1.8e-86 324.3 475 46.1
AL5G43690 Arabidopsis lyrata HOM05D002825 ORTHO05D003824 3.6e-39 167.2 432 31.9
Thhalv10023497m.g Eutrema salsugineum HOM05D002825 ORTHO05D003824 1.8e-38 164.9 431 31.3
AT3G60980 Arabidopsis thaliana HOM05D002825 ORTHO05D003824 6.9e-38 162.9 411 30.7
Carub.0007s2495 Capsella rubella HOM05D002825 ORTHO05D003824 1.7e-36 158.3 435 30.6
AL4G44550 Arabidopsis lyrata HOM05D002825 ORTHO05D003824 2.9e-36 157.5 432 28.5
AL5G44790 Arabidopsis lyrata HOM05D002825 ORTHO05D003824 1.4e-35 155.2 429 29.1
AL5G43650 Arabidopsis lyrata HOM05D002825 ORTHO05D003824 9.3e-35 152.5 397 29.7
AL5G43830 Arabidopsis lyrata HOM05D002825 ORTHO05D003824 7.9e-34 149.4 420 29.0
BcaC05g24908 Brassica carinata HOM05D002825 ORTHO05D003824 7.9e-34 149.4 427 30.0
AL3G34220 Arabidopsis lyrata HOM05D002825 ORTHO05D011549 2.3e-33 147.9 389 31.4
BcaC01g05126 Brassica carinata HOM05D002825 ORTHO05D003824 3.3e-32 144.1 421 26.6
PGR142G0082 Punica granatum HOM05D002825 ORTHO05D003824 5.6e-32 143.3 381 31.0
Thhalv10023949m.g Eutrema salsugineum HOM05D002825 ORTHO05D003824 1.6e-31 141.7 374 29.7
AL5G29610 Arabidopsis lyrata HOM05D002825 ORTHO05D003824 2.8e-31 141.0 398 29.9
AL3G34230 Arabidopsis lyrata HOM05D002825 ORTHO05D003824 3.7e-31 140.6 350 31.7
A05p00840 Brassica napus HOM05D002825 ORTHO05D011549 1.1e-30 139.0 369 29.5
BraA05t19087Z Brassica rapa HOM05D002825 ORTHO05D011549 1.4e-30 138.7 369 29.5
Carub.0005s2724 Capsella rubella HOM05D002825 ORTHO05D003824 4.0e-30 137.1 410 29.0
C04p01010 Brassica napus HOM05D002825 ORTHO05D011549 2.0e-29 134.8 370 29.2
FAN04G1220 Fragaria x ananassa HOM05D002825 ORTHO05D003824 2.6e-29 134.4 441 30.4
Lalb_Chr18g0061131 Lupinus albus HOM05D002825 ORTHO05D003824 2.6e-29 134.4 375 30.4
Potri.004G227800 Populus trichocarpa HOM05D002825 ORTHO05D003824 3.4e-29 134.0 382 29.8
C06p27760 Brassica napus HOM05D002825 ORTHO05D003824 4.5e-29 133.7 389 30.1
FAN18G3010 Fragaria x ananassa HOM05D002825 ORTHO05D003824 4.5e-29 133.7 387 31.0
Lsat_1_v5_gn_7_77221 Lactuca sativa HOM05D002825 ORTHO05D003824 5.8e-29 133.3 386 30.6
BcaC08g45154 Brassica carinata HOM05D002825 ORTHO05D003824 7.6e-29 132.9 389 30.1
FAN08G2274 Fragaria x ananassa HOM05D002825 ORTHO05D003824 7.6e-29 132.9 387 30.5
BcaC02g12622 Brassica carinata HOM05D002825 ORTHO05D011549 3.8e-28 130.6 374 29.1
BcaC02g12824 Brassica carinata HOM05D002825 ORTHO05D011549 3.8e-28 130.6 381 29.4
BolC6t37944H Brassica oleracea HOM05D002825 ORTHO05D003824 3.8e-28 130.6 389 29.8
CARHR170890 Cardamine hirsuta HOM05D002825 ORTHO05D003824 4.9e-28 130.2 422 26.5
BcaC06g33535 Brassica carinata HOM05D002825 ORTHO05D003824 6.4e-28 129.8 336 28.9
BolC4t21754H Brassica oleracea HOM05D002825 ORTHO05D011549 8.4e-28 129.4 374 29.1
C09p31390 Brassica napus HOM05D002825 ORTHO05D003824 1.9e-27 128.3 378 28.8
ECA236G4782 Erigeron canadensis HOM05D002825 ORTHO05D003824 2.4e-27 127.9 384 30.2
Carub.0004s2842 Capsella rubella HOM05D002825 ORTHO05D011549 7.1e-27 126.3 475 29.5
RcHm_v2.0_Chr3g0472581 Rosa chinensis HOM05D002825 ORTHO05D003824 7.1e-27 126.3 337 31.5
C07p48550 Brassica napus HOM05D002825 ORTHO05D003824 9.3e-27 125.9 336 28.3
BolC3t15358H Brassica oleracea HOM05D002825 ORTHO05D003824 2.7e-26 124.4 399 30.3
C03p30090 Brassica napus HOM05D002825 ORTHO05D003824 4.6e-26 123.6 397 29.0
AT5G28340 Arabidopsis thaliana HOM05D002825 ORTHO05D011549 1.0e-25 122.5 337 32.0
AT5G28380 Arabidopsis thaliana HOM05D002825 ORTHO05D011549 1.0e-25 122.5 337 32.0
C01p48580 Brassica napus HOM05D002825 ORTHO05D003824 3.0e-25 120.9 333 27.3
AL5G42790 Arabidopsis lyrata HOM05D002825 ORTHO05D003824 5.1e-25 120.2 379 26.6
FvH4_5g27880 Fragaria vesca HOM05D002825 ORTHO05D003824 5.1e-25 120.2 387 30.0
BraA03t11722Z Brassica rapa HOM05D002825 ORTHO05D003824 8.7e-25 119.4 379 29.8
BolC4t21716H Brassica oleracea HOM05D002825 ORTHO05D011549 1.1e-24 119.0 373 29.0
BcaB02g09551 Brassica carinata HOM05D002825 ORTHO05D011549 1.5e-24 118.6 374 27.8
BcaC02g12609 Brassica carinata HOM05D002825 ORTHO05D011549 1.9e-24 118.2 368 29.9
BolC4t21737H Brassica oleracea HOM05D002825 ORTHO05D011549 1.9e-24 118.2 368 29.9
BolC1t04813H Brassica oleracea HOM05D002825 ORTHO05D003824 2.5e-24 117.9 380 26.3
BolC7t45363H Brassica oleracea HOM05D002825 ORTHO05D003824 2.5e-24 117.9 392 27.3
BcaC02g12597 Brassica carinata HOM05D002825 ORTHO05D011549 5.6e-24 116.7 368 29.9
Thhalv10006738m.g Eutrema salsugineum HOM05D002825 ORTHO05D003824 5.6e-24 116.7 383 29.5
Carub.0005s2723 Capsella rubella HOM05D002825 ORTHO05D023647 2.1e-23 114.8 411 28.0
CARHR140100 Cardamine hirsuta HOM05D002825 ORTHO05D003824 2.8e-23 114.4 401 29.2
Sabra01G0172800 Salix brachista HOM05D002825 ORTHO05D003824 3.7e-23 114.0 382 28.3
A03p25220 Brassica napus HOM05D002825 ORTHO05D003824 1.1e-22 112.5 380 29.5
Ca_17359_v3 Cicer arietinum L. HOM05D002825 ORTHO05D003824 1.4e-22 112.1 376 27.1
A05p25940 Brassica napus HOM05D002825 ORTHO05D011549 3.1e-22 110.9 369 28.7
BcaC01g05136 Brassica carinata HOM05D002825 ORTHO05D003824 4.0e-22 110.5 362 30.4
Carub.0004s2841 Capsella rubella HOM05D002825 ORTHO05D003824 6.9e-22 109.8 417 27.6
BcaC08g45156 Brassica carinata HOM05D002825 ORTHO05D021407 1.7e-20 105.1 423 28.4
RcHm_v2.0_Chr7g0220071 Rosa chinensis HOM05D002825 ORTHO05D003824 2.2e-20 104.8 319 29.2
DCAR_022278 Daucus carota HOM05D002825 ORTHO05D003824 8.4e-20 102.8 385 26.2
AL1G60310 Arabidopsis lyrata HOM05D002825 ORTHO05D003824 1.9e-19 101.7 218 33.9
BcaB01g03268 Brassica carinata HOM05D002825 ORTHO05D003824 3.2e-19 100.9 380 28.4
AL4G44540 Arabidopsis lyrata HOM05D002825 ORTHO05D003824 5.5e-19 100.1 402 26.1
Medtr8g102650 Medicago truncatula HOM05D002825 ORTHO05D003824 5.5e-19 100.1 333 28.2
Lsat_1_v5_gn_5_91740 Lactuca sativa HOM05D002825 ORTHO05D003824 7.1e-19 99.8 410 26.8
Nitab4.5_0001057g0030 Nicotiana tabacum HOM05D002825 ORTHO05D003824 3.9e-17 94.0 377 25.7
AL5G42780 Arabidopsis lyrata HOM05D002825 ORTHO05D023647 3.3e-16 90.9 231 33.3
AL5G44690 Arabidopsis lyrata HOM05D002825 ORTHO05D011549 5.7e-16 90.1 372 28.0
BolC9t55997H Brassica oleracea HOM05D002825 ORTHO05D003824 5.7e-16 90.1 136 36.8
VMungo0540G0272 Vigna mungo HOM05D002825 ORTHO05D003824 5.7e-16 90.1 371 24.3
Nitab4.5_0001129g0060 Nicotiana tabacum HOM05D002825 ORTHO05D003824 1.3e-15 89.0 377 25.7
BcaC01g05127 Brassica carinata HOM05D002825 ORTHO05D003824 2.8e-15 87.8 380 27.1
Carub.0201s0001 Capsella rubella HOM05D002825 ORTHO05D003824 2.8e-15 87.8 409 25.4
CAN.G855.39 Capsicum annuum HOM05D002825 ORTHO05D003824 2.8e-15 87.8 377 26.0
Glyma.16G001000 Glycine max HOM05D002825 ORTHO05D003824 2.8e-15 87.8 382 27.0
BcaC07g38540 Brassica carinata HOM05D002825 ORTHO05D003824 1.4e-14 85.5 376 24.5
C08p13530 Brassica napus HOM05D002825 ORTHO05D003824 1.4e-14 85.5 376 24.5
BolC8t48989H Brassica oleracea HOM05D002825 ORTHO05D003824 1.4e-14 85.5 376 24.5
AUR62025156 Chenopodium quinoa HOM05D006156 ORTHO05D007699 2.4e-14 84.7 262 30.9
Aa31LG1G4670 Aethionema arabicum HOM05D002825 ORTHO05D003824 4.1e-14 84.0 148 37.2
Carub.0005s2842 Capsella rubella HOM05D002825 ORTHO05D011549 5.3e-14 83.6 383 24.8
BcaNung04658 Brassica carinata HOM05D002825 ORTHO05D003824 6.9e-14 83.2 268 27.2
HanXRQChr08g0228491 Helianthus annuus HOM05D002825 ORTHO05D003824 6.9e-14 83.2 327 25.4
AL5G43820 Arabidopsis lyrata HOM05D002825 ORTHO05D011549 9.0e-14 82.8 398 24.6
CiPaw.05G002300 Carya illinoinensis HOM05D002825 ORTHO05D003824 9.0e-14 82.8 373 24.9
GSVIVG01023159001 Vitis vinifera HOM05D002825 ORTHO05D003824 9.0e-14 82.8 390 26.4
BcaB08g37339 Brassica carinata HOM05D002825 ORTHO05D003824 2.0e-13 81.6 376 25.0
BcaC07g41827 Brassica carinata HOM05D002825 ORTHO05D003824 2.0e-13 81.6 174 32.8
C05p08380 Brassica napus HOM05D002825 ORTHO05D003824 2.0e-13 81.6 148 35.1
BolC5t29589H Brassica oleracea HOM05D002825 ORTHO05D003824 2.0e-13 81.6 148 35.1
CARHR265210 Cardamine hirsuta HOM05D002825 ORTHO05D011549 2.0e-13 81.6 367 26.2
Potri.003G002950 Populus trichocarpa HOM05D002825 ORTHO05D003824 2.0e-13 81.6 189 30.7
A06p06900 Brassica napus HOM05D002825 ORTHO05D003824 3.4e-13 80.9 377 25.2
BraA06t23906Z Brassica rapa HOM05D002825 ORTHO05D003824 3.4e-13 80.9 377 25.2
Cpa.g.sc113.4 Carica papaya HOM05D002825 ORTHO05D003824 4.5e-13 80.5 149 35.6
A09p65140 Brassica napus HOM05D002825 ORTHO05D003824 5.9e-13 80.1 148 35.8
BraA09t41857Z Brassica rapa HOM05D002825 ORTHO05D003824 5.9e-13 80.1 148 35.8
C08p49080 Brassica napus HOM05D002825 ORTHO05D003824 7.7e-13 79.7 148 35.8
MD08G1246600 Malus domestica HOM05D002825 ORTHO05D003824 7.7e-13 79.7 99 44.4
BcaC04g21472 Brassica carinata HOM05D002825 ORTHO05D003824 1.0e-12 79.3 140 33.6
CARHR170900 Cardamine hirsuta HOM05D002825 ORTHO05D023647 1.0e-12 79.3 258 29.1
AL7G38410 Arabidopsis lyrata HOM05D002825 ORTHO05D003824 1.3e-12 79.0 263 27.0
MD15G1441500 Malus domestica HOM05D002825 ORTHO05D003824 1.3e-12 79.0 99 44.4
Sed0018539 Sechium edule HOM05D002825 ORTHO05D003824 1.3e-12 79.0 375 24.5
Carub.0001s0966 Capsella rubella HOM05D002825 ORTHO05D003824 3.8e-12 77.4 150 35.3
Zm00001eb161270 Zea mays HOM05D006156 ORTHO05D007699 3.8e-12 77.4 263 30.0
Glyma.12G164700 Glycine max HOM05D002825 ORTHO05D003824 5.0e-12 77.0 374 23.8
AL5G29530 Arabidopsis lyrata HOM05D002825 ORTHO05D011549 8.5e-12 76.3 265 27.9
CARHR010370 Cardamine hirsuta HOM05D002825 ORTHO05D003824 8.5e-12 76.3 148 34.5
C01p48210 Brassica napus HOM05D002825 ORTHO05D003824 1.1e-11 75.9 199 29.1
AT3G60960 Arabidopsis thaliana HOM05D002825 ORTHO05D011549 1.4e-11 75.5 419 26.3
C08p36570 Brassica napus HOM05D002825 ORTHO05D003824 1.9e-11 75.1 251 26.3
BolC8t51240H Brassica oleracea HOM05D002825 ORTHO05D003824 1.9e-11 75.1 251 26.3
BraA08t35321Z Brassica rapa HOM05D002825 ORTHO05D003824 1.9e-11 75.1 149 31.5
A08p34080 Brassica napus HOM05D002825 ORTHO05D003824 2.5e-11 74.7 149 31.5
Aqoxy6G00055 Aquilegia oxysepala HOM05D002825 ORTHO05D003824 3.2e-11 74.3 370 25.4
AL1G21000 Arabidopsis lyrata HOM05D002825 ORTHO05D003824 4.2e-11 73.9 148 33.8
EL10Ac6g14013 Beta vulgaris HOM05D002825 ORTHO05D003824 4.2e-11 73.9 139 36.0
Carub.0201s0002 Capsella rubella HOM05D002825 ORTHO05D011549 5.5e-11 73.6 372 26.1
AL5G43680 Arabidopsis lyrata HOM05D002825 ORTHO05D011549 7.2e-11 73.2 382 24.3
AL5G44780 Arabidopsis lyrata HOM05D002825 ORTHO05D011549 7.2e-11 73.2 375 25.6
Medtr7g069270 Medicago truncatula HOM05D002825 ORTHO05D003824 7.2e-11 73.2 399 22.3
PGSC0003DMG400024905 Solanum tuberosum HOM05D002825 ORTHO05D003824 1.2e-10 72.4 377 24.4
Solyc01g103160.3 Solanum lycopersicum HOM05D002825 ORTHO05D003824 1.6e-10 72.0 377 24.4
Sopen01g045570 Solanum pennellii HOM05D002825 ORTHO05D003824 2.1e-10 71.6 377 24.1
Phvul.006G221100 Phaseolus vulgaris HOM05D002825 ORTHO05D003824 2.7e-10 71.2 98 40.8
Eucgr.I02789 Eucalyptus grandis HOM05D002825 ORTHO05D003824 3.6e-10 70.9 99 42.4
CARHR170480 Cardamine hirsuta HOM05D002825 ORTHO05D023647 6.1e-10 70.1 172 29.7
MELO3C021840.2 Cucumis melo HOM05D002825 ORTHO05D003824 6.1e-10 70.1 158 31.6
Dinv29670 Davidia involucrata HOM05D002825 ORTHO05D003824 6.1e-10 70.1 378 24.3
Oeu000151.1 Olea europaea HOM05D002825 ORTHO05D003824 7.9e-10 69.7 139 36.0
Peaxi162Scf00011g01628 Petunia axillaris HOM05D002825 ORTHO05D003824 7.9e-10 69.7 378 24.1
CSS0030972 Camellia sinensis var. sinensis HOM05D002825 ORTHO05D003824 2.3e-09 68.2 166 30.7
CsaV3_2G036260 Cucumis sativus L. HOM05D002825 ORTHO05D003824 3.9e-09 67.4 158 31.0
DCAR_003286 Daucus carota HOM05D002825 ORTHO05D003824 8.8e-09 66.2 373 22.8
Psat7g131880 Pisum sativum HOM05D002825 ORTHO05D003824 8.8e-09 66.2 87 43.7
BcaC01g05137 Brassica carinata HOM05D002825 ORTHO05D003824 1.1e-08 65.9 191 26.2
BolC3t15357H Brassica oleracea HOM05D002825 ORTHO05D003824 1.1e-08 65.9 191 26.2
Nn8g41098 Nelumbo nucifera HOM05D002825 ORTHO05D003824 1.1e-08 65.9 329 22.8
Carub.0006s2575 Capsella rubella HOM05D002825 ORTHO05D011549 2.0e-08 65.1 373 25.2
Manes.07G028200 Manihot esculenta HOM05D002825 ORTHO05D003824 2.0e-08 65.1 161 29.2
Medtr7g069290 Medicago truncatula HOM05D002825 ORTHO05D003824 2.5e-08 64.7 412 22.3
Sc06g0000730 Simmondsia chinensis HOM05D002825 ORTHO05D003824 2.5e-08 64.7 99 37.4
CANSAT80G1108 Cannabis sativa HOM05D002825 ORTHO05D003824 4.3e-08 63.9 87 42.5
COL.COLO4_16762 Corchorus olitorius HOM05D006156 ORTHO05D007699 5.7e-08 63.5 251 28.3
Lj9A281T41 Lonicera japonica HOM05D002825 ORTHO05D003824 7.4e-08 63.2 99 39.4
BcaB02g07363 Brassica carinata HOM05D002825 ORTHO05D021407 2.8e-07 61.2 118 42.4
Sp1g08860 Schrenkiella parvula HOM05D002825 ORTHO05D003824 2.8e-07 61.2 103 35.0
C03p30080 Brassica napus HOM05D002825 ORTHO05D003824 4.8e-07 60.5 191 25.7
QL02p102471 Quercus lobata HOM05D002825 ORTHO05D003824 6.3e-07 60.1 69 52.2
QL02p103093 Quercus lobata HOM05D002825 ORTHO05D003824 6.3e-07 60.1 69 52.2
THA.LOC104823676 Tarenaya hassleriana HOM05D002825 ORTHO05D003824 6.3e-07 60.1 68 54.4
Thecc.10G188300 Theobroma cacao HOM05D002825 ORTHO05D003824 8.2e-07 59.7 87 42.5
Ciclev10000271m.g Citrus clementina HOM05D002825 ORTHO05D003824 1.1e-06 59.3 372 22.8
Atru.chr6.351 Acer truncatum HOM05D002825 ORTHO05D003824 1.4e-06 58.9 87 43.7
Atru.chr6.402 Acer truncatum HOM05D002825 ORTHO05D003824 1.4e-06 58.9 87 43.7
TPR.G19387 Trifolium pratense HOM05D006156 ORTHO05D007699 1.8e-06 58.5 361 26.0
Atru.chr13.1188 Acer truncatum HOM05D002825 ORTHO05D003824 2.4e-06 58.2 87 42.5
Gorai.012G012400 Gossypium raimondii HOM05D002825 ORTHO05D003824 2.4e-06 58.2 91 39.6
C06p27800 Brassica napus HOM05D000647 ORTHO05D011549 3.1e-06 57.8 295 24.7
BolC6t37947H Brassica oleracea HOM05D000647 ORTHO05D011549 3.1e-06 57.8 295 24.7
Cfa004457 Carpinus fangiana HOM05D002825 ORTHO05D003824 4.1e-06 57.4 79 46.8
ClCG10G007350 Citrullus lanatus HOM05D002825 ORTHO05D003824 4.1e-06 57.4 69 50.7
SGA_v2.0_scaffold44G16801 Striga asiatica HOM05D006156 ORTHO05D007699 5.3e-06 57.0 308 25.6
COL.COLO4_19503 Corchorus olitorius HOM05D002825 ORTHO05D003824 6.9e-06 56.6 87 40.2
Duzib128G0132 Durio zibethinus HOM05D002825 ORTHO05D003824 6.9e-06 56.6 87 40.2
Gohir.D04G010500 Gossypium hirsutum HOM05D002825 ORTHO05D003824 6.9e-06 56.6 205 26.3
Hund15406 Selenicereus undatus HOM05D002825 ORTHO05D003824 6.9e-06 56.6 137 32.1
Haze_10006 Corylus avellana HOM05D002825 ORTHO05D003824 9.1e-06 56.2 78 47.4
Lj6g0026509 Lotus japonicus HOM05D002825 ORTHO05D003824 9.1e-06 56.2 69 49.3
HPP92_001276 Vanilla planifolia HOM05D002825 ORTHO05D003824 9.1e-06 56.2 98 34.7


User provided reference genes

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