Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C04p00990 Brassica napus HOM05D005434 ORTHO05D006412 0.0e+00 1464.1 778 100.0
BraA05t19085Z Brassica rapa HOM05D005434 ORTHO05D006412 0.0e+00 1365.1 784 93.8
A05p00820 Brassica napus HOM05D005434 ORTHO05D006412 0.0e+00 1272.3 732 93.6
BolC4t21751H Brassica oleracea HOM05D005434 ORTHO05D006412 0.0e+00 1272.3 770 91.4
Sp4g28980 Schrenkiella parvula HOM05D005434 ORTHO05D006412 0.0e+00 1134.4 794 79.6
BcaC02g12826 Brassica carinata HOM05D005434 ORTHO05D006412 0.0e+00 1117.8 792 79.5
Thhalv10001318m.g Eutrema salsugineum HOM05D005434 ORTHO05D006412 2.3e-310 1068.5 789 77.1
AT2G46980 Arabidopsis thaliana HOM05D005434 ORTHO05D006412 8.4e-308 1060.1 795 75.8
CARHR142350 Cardamine hirsuta HOM05D005434 ORTHO05D006412 1.2e-306 1056.2 794 75.4
AL4G46460 Arabidopsis lyrata HOM05D005434 ORTHO05D006412 1.1e-302 1043.1 795 75.1
BcaC02g12619 Brassica carinata HOM05D005434 ORTHO05D006412 9.6e-296 1020.0 621 90.8
Carub.0004s2971 Capsella rubella HOM05D005434 ORTHO05D006412 3.5e-290 1001.5 795 73.0
Aa31LG1G28350 Aethionema arabicum HOM05D005434 ORTHO05D006412 1.4e-270 936.4 800 68.1
BcaB07g33880 Brassica carinata HOM05D005434 ORTHO05D006412 1.0e-127 461.8 444 64.6
Atru.chr5.851 Acer truncatum HOM05D005434 ORTHO05D006412 4.2e-81 307.0 830 33.1
Manes.05G008100 Manihot esculenta HOM05D005434 ORTHO05D006412 6.6e-79 299.7 811 33.3
CiPaw.08G081800 Carya illinoinensis HOM05D005434 ORTHO05D006412 2.4e-73 281.2 827 32.8
Thecc.01G326300 Theobroma cacao HOM05D005434 ORTHO05D006412 2.3e-71 274.6 818 32.6
Duzib138G0614 Durio zibethinus HOM05D005434 ORTHO05D006412 1.5e-70 271.9 794 32.1
BolC3t15425H Brassica oleracea HOM05D005434 ORTHO05D006412 2.5e-70 271.2 373 48.8
Potri.002G186200 Populus trichocarpa HOM05D005434 ORTHO05D006412 2.1e-69 268.1 880 30.7
QL12p035062 Quercus lobata HOM05D005434 ORTHO05D006412 1.1e-68 265.8 796 32.2
C03p30750 Brassica napus HOM05D005434 ORTHO05D011138 6.9e-68 263.1 373 48.3
Gohir.A11G105400 Gossypium hirsutum HOM05D005434 ORTHO05D006412 4.5e-67 260.4 866 31.3
Potri.014G111500 Populus trichocarpa HOM05D005434 ORTHO05D006412 4.9e-66 256.9 859 31.3
Lj5g0001301 Lotus japonicus HOM05D005434 ORTHO05D006412 4.2e-65 253.8 817 30.6
COL.COLO4_23119 Corchorus olitorius HOM05D005434 ORTHO05D006412 6.0e-64 250.0 797 31.4
Haze_05156 Corylus avellana HOM05D005434 ORTHO05D006412 3.0e-63 247.7 782 30.1
Gorai.007G117900 Gossypium raimondii HOM05D005434 ORTHO05D006412 3.9e-63 247.3 874 30.3
TPR.G3083 Trifolium pratense HOM05D005434 ORTHO05D006412 6.7e-63 246.5 795 31.7
Dinv12078 Davidia involucrata HOM05D005434 ORTHO05D006412 4.8e-61 240.4 641 33.5
Gohir.D11G110300 Gossypium hirsutum HOM05D005434 ORTHO05D006412 6.2e-61 240.0 872 29.6
Phvul.007G208600 Phaseolus vulgaris HOM05D005434 ORTHO05D006412 1.4e-60 238.8 797 30.4
MD09G1291300 Malus domestica HOM05D005434 ORTHO05D006412 2.4e-60 238.0 825 30.7
Glyma.02G007100 Glycine max HOM05D005434 ORTHO05D006412 4.0e-60 237.3 803 30.8
Gohir.A07G131800 Gossypium hirsutum HOM05D005434 ORTHO05D006412 2.6e-59 234.6 804 31.2
RcHm_v2.0_Chr3g0485651 Rosa chinensis HOM05D005434 ORTHO05D006412 3.4e-59 234.2 825 30.4
Glyma.10G138700 Glycine max HOM05D005434 ORTHO05D006412 4.5e-59 233.8 823 30.0
MD17G1286100 Malus domestica HOM05D005434 ORTHO05D006412 4.5e-59 233.8 835 29.5
Psat6g158560 Pisum sativum HOM05D005434 ORTHO05D006412 8.4e-58 229.6 813 30.1
Duzib133G0025 Durio zibethinus HOM05D005434 ORTHO05D006412 1.9e-57 228.4 772 31.3
Rhsim02G0256300 Rhododendron simsii HOM05D005434 ORTHO05D006412 2.5e-57 228.0 792 28.9
Gorai.001G148200 Gossypium raimondii HOM05D005434 ORTHO05D006412 7.1e-57 226.5 814 29.9
Actinidia20964 Actinidia chinensis HOM05D005434 ORTHO05D006412 9.3e-57 226.1 811 29.7
Ca_10237_v3 Cicer arietinum L. HOM05D005434 ORTHO05D006412 9.3e-57 226.1 756 30.2
BcaB02g09549 Brassica carinata HOM05D000603 ORTHO05D006412 2.1e-56 224.9 337 49.3
Sabra14G0081900 Salix brachista HOM05D005434 ORTHO05D006412 1.3e-55 222.2 854 28.7
FvH4_1g26160 Fragaria vesca HOM05D005434 ORTHO05D006412 5.1e-55 220.3 884 29.0
Solyc01g079080.3 Solanum lycopersicum HOM05D005434 ORTHO05D006412 1.1e-54 219.2 817 29.4
Medtr1g085710 Medicago truncatula HOM05D005434 ORTHO05D006412 3.3e-54 217.6 790 31.0
Sopen01g030590 Solanum pennellii HOM05D005434 ORTHO05D006412 4.8e-53 213.8 817 29.3
PGSC0003DMG400001122 Solanum tuberosum HOM05D005434 ORTHO05D006412 1.4e-52 212.2 816 29.8
FAN19G2204 Fragaria x ananassa HOM05D005434 ORTHO05D006412 3.4e-51 207.6 884 28.6
TAR636G0087 Trochodendron aralioides HOM05D005434 ORTHO05D006412 2.5e-49 201.4 809 31.0
CsaV3_6G012840 Cucumis sativus L. HOM05D005434 ORTHO05D006412 3.2e-49 201.1 803 28.5
FAN26G2209 Fragaria x ananassa HOM05D005434 ORTHO05D006412 2.7e-48 198.0 841 29.3
PGR142G2929 Punica granatum HOM05D005434 ORTHO05D006412 2.7e-48 198.0 962 26.2
CAN.G179.30 Capsicum annuum HOM05D005434 ORTHO05D006412 6.1e-48 196.8 836 28.2
Nn3g21972 Nelumbo nucifera HOM05D005434 ORTHO05D006412 1.5e-46 192.2 903 28.9
Cpa.g.sc57.27 Carica papaya HOM05D005434 ORTHO05D006412 4.3e-46 190.7 752 30.2
DCAR_002941 Daucus carota HOM05D005434 ORTHO05D006412 1.7e-45 188.7 801 28.5
Prupe.3G001600 Prunus persica HOM05D005434 ORTHO05D006412 2.8e-45 188.0 774 28.2
Aqoxy2G02439 Aquilegia oxysepala HOM05D005434 ORTHO05D006412 4.8e-45 187.2 829 28.3
FAN23G2884 Fragaria x ananassa HOM05D005434 ORTHO05D006412 2.4e-44 184.9 845 28.4
Peaxi162Scf00309g00625 Petunia axillaris HOM05D005434 ORTHO05D006412 2.4e-44 184.9 846 28.1
TWI14G0253 Tripterygium wilfordii HOM05D005434 ORTHO05D006412 3.1e-44 184.5 834 27.8
arahy.Tifrunner.gnm1.ann1.G6BN46 Arachis hypogaea HOM05D005434 ORTHO05D006412 4.1e-44 184.1 830 27.2
VMungo0720G1215 Vigna mungo HOM05D005434 ORTHO05D006412 4.1e-44 184.1 712 29.1
Nitab4.5_0000222g0380 Nicotiana tabacum HOM05D005434 ORTHO05D006412 2.0e-43 181.8 808 26.1
SHI34042 Sapria himalayana HOM05D005434 ORTHO05D006412 2.6e-43 181.4 791 27.7
CANSAT25G2989 Cannabis sativa HOM05D005434 ORTHO05D006412 1.7e-42 178.7 903 26.0
MELO3C013628.2 Cucumis melo HOM05D005434 ORTHO05D006412 6.5e-42 176.8 809 27.8
ClCG02G017720 Citrullus lanatus HOM05D005434 ORTHO05D006412 8.5e-42 176.4 784 27.7
Cc01_g21750 Coffea canephora HOM05D005434 ORTHO05D006412 8.5e-42 176.4 801 29.5
A03p25810 Brassica napus HOM05D005434 ORTHO05D006412 1.9e-41 175.3 214 57.5
BraA03t11795Z Brassica rapa HOM05D005434 ORTHO05D006412 1.9e-41 175.3 214 57.5
Eucgr.K00557 Eucalyptus grandis HOM05D005434 ORTHO05D006412 1.6e-40 172.2 853 27.8
Sed0005889 Sechium edule HOM05D005434 ORTHO05D006412 2.1e-40 171.8 848 27.4
DCAR_005712 Daucus carota HOM05D005434 ORTHO05D006412 2.3e-39 168.3 954 26.8
Gohir.D07G136100 Gossypium hirsutum HOM05D005434 ORTHO05D006412 3.0e-39 167.9 756 27.6
Lalb_Chr02g0147201 Lupinus albus HOM05D005434 ORTHO05D006412 3.0e-39 167.9 209 44.0
TAR365G0925 Trochodendron aralioides HOM05D005434 ORTHO05D006412 1.1e-38 166.0 810 27.7
Lj1A7G43 Lonicera japonica HOM05D005434 ORTHO05D006412 1.3e-37 162.5 166 50.6
PSO210G4596 Papaver somniferum HOM05D005434 ORTHO05D006412 2.8e-37 161.4 701 29.5
BcaC01g05050 Brassica carinata HOM05D005434 ORTHO05D006412 8.2e-37 159.8 181 61.9
ECA247G2130 Erigeron canadensis HOM05D005434 ORTHO05D008082 7.0e-36 156.8 799 25.9
Sed0026347 Sechium edule HOM05D005434 ORTHO05D006412 1.5e-35 155.6 813 26.7
Migut.D00008 Erythranthe guttata HOM05D005434 ORTHO05D006412 5.0e-34 150.6 837 26.3
MBI18_g03842_MAGBIO Magnolia biondii HOM05D005434 ORTHO05D006412 5.0e-34 150.6 818 25.6
BcaC02g11600 Brassica carinata HOM05D024878 ORTHO05D039720 4.2e-33 147.5 193 56.5
Nitab4.5_0003092g0060 Nicotiana tabacum HOM05D005434 ORTHO05D006412 7.2e-33 146.7 879 25.9
Sc17g0000070 Simmondsia chinensis HOM05D005434 ORTHO05D006412 9.4e-33 146.4 795 26.8
FAN28G1136 Fragaria x ananassa HOM05D005434 ORTHO05D006412 2.3e-31 141.7 921 26.2
AUR62011691 Chenopodium quinoa HOM05D005434 ORTHO05D006412 3.9e-31 141.0 802 27.2
AL6G38770 Arabidopsis lyrata HOM05D024724 ORTHO05D038645 8.8e-31 139.8 318 40.3
Lsat_1_v5_gn_9_7120 Lactuca sativa HOM05D005434 ORTHO05D006412 1.1e-30 139.4 786 26.0
BcaB02g09103 Brassica carinata HOM05D005434 ORTHO05D006412 1.3e-29 136.0 132 59.1
EL10Ac4g10377 Beta vulgaris HOM05D005434 ORTHO05D006412 4.1e-28 131.0 794 27.5
CiPaw.07G126400 Carya illinoinensis HOM05D005434 ORTHO05D006412 9.1e-28 129.8 137 43.8
Ciclev10019510m.g Citrus clementina HOM05D005434 ORTHO05D006412 1.6e-27 129.0 573 27.2
Oeu052591.1 Olea europaea HOM05D005434 ORTHO05D006412 2.6e-27 128.3 755 27.0
CSS0010810 Camellia sinensis var. sinensis HOM05D005434 ORTHO05D006412 5.0e-26 124.0 587 30.3
Sc17g0000050 Simmondsia chinensis HOM05D005434 ORTHO05D006412 5.0e-26 124.0 167 40.7
GSVIVG01028239001 Vitis vinifera HOM05D005434 ORTHO05D006412 1.1e-25 122.9 136 44.1
GSVIVG01028240001 Vitis vinifera HOM05D005434 ORTHO05D006412 4.2e-25 120.9 572 29.2
MBI19_g04828_MAGBIO Magnolia biondii HOM05D005434 ORTHO05D006412 8.0e-24 116.7 831 25.8
SGA_v2.0_scaffold310G48189 Striga asiatica HOM05D005434 ORTHO05D006412 4.0e-23 114.4 819 24.9
CDE02G0039 Ceratophyllum demersum HOM05D005434 ORTHO05D006412 8.8e-23 113.2 149 43.6
Zm00001eb233800 Zea mays HOM05D005434 ORTHO05D006412 9.7e-22 109.8 668 27.5
Os10g0405500 Oryza sativa ssp. japonica HOM05D005434 ORTHO05D006412 6.3e-21 107.1 888 24.8
BcaC02g12612 Brassica carinata HOM05D000603 ORTHO05D018684 8.3e-21 106.7 99 64.6
AUR62024551 Chenopodium quinoa HOM05D005434 ORTHO05D006412 1.1e-20 106.3 796 26.0
Ciclev10023478m.g Citrus clementina HOM05D005434 ORTHO05D006412 1.2e-19 102.8 99 54.5
BolC4t21719H Brassica oleracea HOM05D000603 ORTHO05D018684 4.5e-19 100.9 78 69.2
Dinv33178 Davidia involucrata HOM05D005434 ORTHO05D006412 7.7e-19 100.1 106 47.2
CiPaw.07G126300 Carya illinoinensis HOM05D005434 ORTHO05D006412 8.0e-16 90.1 597 27.1
Dinv33176 Davidia involucrata HOM05D005434 ORTHO05D006412 1.5e-14 85.9 211 34.1
SGA_v2.0_scaffold417G51248 Striga asiatica HOM05D005434 ORTHO05D006412 2.6e-14 85.1 918 24.2
arahy.Tifrunner.gnm1.ann1.9BA1LG Arachis hypogaea HOM05D005434 ORTHO05D006412 1.1e-12 79.7 634 24.8
Lj1A7T44 Lonicera japonica HOM05D005434 ORTHO05D006412 1.1e-12 79.7 463 27.9
HPP92_011320 Vanilla planifolia HOM05D005434 ORTHO05D006412 3.1e-12 78.2 880 22.0
Lalb_Chr02g0147191 Lupinus albus HOM05D005434 ORTHO05D006412 1.6e-11 75.9 571 24.3
SEGI_30180 Sequoiadendron giganteum HOM05D005434 ORTHO05D006412 3.3e-09 68.2 200 26.5
PGSC0003DMG400023095 Solanum tuberosum HOM05D005434 ORTHO05D007977 8.0e-08 63.5 112 34.8
Mapoly0021s0152 Marchantia polymorpha HOM05D022252 ORTHO05D006412 1.4e-07 62.8 230 24.8
Dinv33187 Davidia involucrata HOM05D005434 ORTHO05D006412 3.0e-07 61.6 101 38.6
SMO367G0284 Selaginella moellendorffii HOM05D022252 ORTHO05D006993 8.9e-07 60.1 173 28.3
CDE08G1326 Ceratophyllum demersum HOM05D005434 ORTHO05D006412 1.2e-06 59.7 71 43.7
Pp3c2_29340 Physcomitrium patens HOM05D022252 ORTHO05D006412 1.5e-06 59.3 158 21.5


User provided reference genes

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