Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C04p00870 Brassica napus HOM05D004916 ORTHO05D006147 3.6e-103 378.3 191 100.0
BNapus_Darmor_BZH_scaffold_296p00020 Brassica napus HOM05D004916 ORTHO05D006147 3.0e-97 358.6 192 96.9
C04p39620 Brassica napus HOM05D004916 ORTHO05D006147 1.5e-96 356.3 192 96.4
BolC4t21725H Brassica oleracea HOM05D004916 ORTHO05D006147 2.1e-90 335.9 170 99.4
BolC4t25528H Brassica oleracea HOM05D004916 ORTHO05D006147 2.3e-86 322.4 170 97.1
BcaC02g09022 Brassica carinata HOM05D004916 ORTHO05D006147 5.8e-77 291.2 164 91.5
BcaC02g12602 Brassica carinata HOM05D004916 ORTHO05D006147 7.6e-77 290.8 164 90.9
BcaC02g12821 Brassica carinata HOM05D004916 ORTHO05D006147 4.6e-74 281.6 184 83.2
BcaC02g12625 Brassica carinata HOM05D004916 ORTHO05D006147 2.6e-61 239.2 187 74.9
A05p00890 Brassica napus HOM05D004916 ORTHO05D006147 2.6e-61 239.2 186 74.2
C04p01040 Brassica napus HOM05D004916 ORTHO05D006147 5.8e-61 238.0 187 74.3
BolC4t21757H Brassica oleracea HOM05D004916 ORTHO05D006147 5.8e-61 238.0 187 74.3
BraA05t19090Z Brassica rapa HOM05D004916 ORTHO05D006147 5.8e-61 238.0 186 73.7
A03p25790 Brassica napus HOM05D004916 ORTHO05D006147 7.1e-59 231.1 188 71.8
BcaC01g05053 Brassica carinata HOM05D004916 ORTHO05D006147 1.6e-58 229.9 192 71.4
C03p30740 Brassica napus HOM05D004916 ORTHO05D006147 1.6e-58 229.9 192 71.4
BolC3t15423H Brassica oleracea HOM05D004916 ORTHO05D006147 1.6e-58 229.9 192 71.4
BraA03t11793Z Brassica rapa HOM05D004916 ORTHO05D006147 1.6e-58 229.9 188 71.8
Thhalv10001588m.g Eutrema salsugineum HOM05D004916 ORTHO05D006147 7.9e-58 227.6 196 69.4
BcaB01g03195 Brassica carinata HOM05D004916 ORTHO05D006147 2.0e-53 213.0 185 67.6
Carub.0004s2967 Capsella rubella HOM05D004916 ORTHO05D006147 8.4e-52 207.6 198 66.2
CARHR142290 Cardamine hirsuta HOM05D004916 ORTHO05D006147 1.5e-48 196.8 190 62.1
AL4G46410 Arabidopsis lyrata HOM05D004916 ORTHO05D006147 2.1e-47 193.0 197 60.4
BcaB01g03196 Brassica carinata HOM05D004916 ORTHO05D006147 5.9e-45 184.9 189 63.0
AT2G46940 Arabidopsis thaliana HOM05D004916 ORTHO05D006147 9.3e-43 177.6 203 60.1
A09p54150 Brassica napus HOM05D004916 ORTHO05D006147 1.4e-27 127.1 191 46.6
CARHR172410 Cardamine hirsuta HOM05D004916 ORTHO05D006147 9.4e-27 124.4 167 50.9
Sp5g01300 Schrenkiella parvula HOM05D004916 ORTHO05D006147 1.6e-26 123.6 210 46.2
Thhalv10006193m.g Eutrema salsugineum HOM05D004916 ORTHO05D006147 4.7e-26 122.1 199 45.2
Carub.0005s2882 Capsella rubella HOM05D004916 ORTHO05D006147 7.9e-26 121.3 195 46.7
BraA09t40829Z Brassica rapa HOM05D004916 ORTHO05D006147 1.8e-25 120.2 174 47.1
THA.LOC104827649 Tarenaya hassleriana HOM05D004916 ORTHO05D006147 3.0e-25 119.4 211 44.1
C08p37030 Brassica napus HOM05D004916 ORTHO05D006147 3.9e-25 119.0 175 48.6
AT3G62070 Arabidopsis thaliana HOM05D004916 ORTHO05D006147 5.2e-25 118.6 171 49.1
BolC8t51280H Brassica oleracea HOM05D004916 ORTHO05D006147 5.2e-25 118.6 177 47.5
AL5G44750 Arabidopsis lyrata HOM05D004916 ORTHO05D006147 8.8e-25 117.9 173 50.3
Aa31LG10G16040 Aethionema arabicum HOM05D004916 ORTHO05D006147 3.5e-21 105.9 177 42.9
BcaC07g40699 Brassica carinata HOM05D004916 ORTHO05D006147 2.5e-19 99.8 180 43.3
Aa31LG1G28300 Aethionema arabicum HOM05D004916 ORTHO05D006147 2.3e-17 93.2 196 40.8
Lj5g0005115 Lotus japonicus HOM05D004916 ORTHO05D006147 1.7e-15 87.0 191 35.1
Phvul.001G219100 Phaseolus vulgaris HOM05D004916 ORTHO05D006147 1.7e-15 87.0 199 38.2
Lj1g0011620 Lotus japonicus HOM05D004916 ORTHO05D006147 8.2e-15 84.7 215 35.3
Lalb_Chr18g0046341 Lupinus albus HOM05D004916 ORTHO05D006147 1.6e-13 80.5 211 32.7
Ciclev10021551m.g Citrus clementina HOM05D004916 ORTHO05D006147 2.7e-13 79.7 226 34.1
Duzib138G0475 Durio zibethinus HOM05D004916 ORTHO05D006147 2.7e-13 79.7 223 34.5
Glyma.03G225300 Glycine max HOM05D004916 ORTHO05D006147 3.5e-13 79.3 186 34.9
DCAR_005711 Daucus carota HOM05D004916 ORTHO05D006147 4.5e-13 79.0 209 33.0
Manes.05G007300 Manihot esculenta HOM05D004916 ORTHO05D006147 4.5e-13 79.0 223 35.0
Glyma.19G222300 Glycine max HOM05D004916 ORTHO05D006147 7.7e-13 78.2 190 36.8
Manes.01G235900 Manihot esculenta HOM05D004916 ORTHO05D006147 7.7e-13 78.2 197 35.5
Ca_09253_v3 Cicer arietinum L. HOM05D004916 ORTHO05D006147 2.2e-12 76.6 225 35.1
VMungo1383G1740 Vigna mungo HOM05D004916 ORTHO05D006147 2.2e-12 76.6 196 35.7
arahy.Tifrunner.gnm1.ann1.Y1689U Arachis hypogaea HOM05D004916 ORTHO05D006147 1.5e-11 73.9 167 34.1
Gohir.A12G119000 Gossypium hirsutum HOM05D004916 ORTHO05D006147 1.5e-11 73.9 192 34.4
Gohir.D12G122800 Gossypium hirsutum HOM05D004916 ORTHO05D006147 1.9e-11 73.6 187 35.3
Gorai.008G133600 Gossypium raimondii HOM05D004916 ORTHO05D006147 1.9e-11 73.6 187 35.3
Nn4g25313 Nelumbo nucifera HOM05D004916 ORTHO05D006147 7.2e-11 71.6 74 52.7
Sabra02G0148800 Salix brachista HOM05D004916 ORTHO05D006147 7.2e-11 71.6 211 34.6
Eucgr.A00995 Eucalyptus grandis HOM05D004916 ORTHO05D006147 9.4e-11 71.2 203 32.5
Gohir.A11G105700 Gossypium hirsutum HOM05D004916 ORTHO05D006147 9.4e-11 71.2 208 33.7
TPR.G8393 Trifolium pratense HOM05D004916 ORTHO05D006147 1.2e-10 70.9 220 34.5
FAN26G2369 Fragaria x ananassa HOM05D004916 ORTHO05D006147 2.1e-10 70.1 86 45.3
FAN28G2008 Fragaria x ananassa HOM05D004916 ORTHO05D006147 2.1e-10 70.1 86 45.3
Medtr7g110880 Medicago truncatula HOM05D004916 ORTHO05D006147 2.1e-10 70.1 221 36.7
Prupe.3G001400 Prunus persica HOM05D004916 ORTHO05D006147 2.1e-10 70.1 231 30.7
TAR553G0002 Trochodendron aralioides HOM05D004916 ORTHO05D006147 2.1e-10 70.1 214 33.6
FAN23G1874 Fragaria x ananassa HOM05D004916 ORTHO05D006147 2.7e-10 69.7 87 44.8
PGR042G3904 Punica granatum HOM05D004916 ORTHO05D006147 2.7e-10 69.7 200 36.0
Thecc.01G327100 Theobroma cacao HOM05D004916 ORTHO05D006147 2.7e-10 69.7 213 31.9
FvH4_1g26130 Fragaria vesca HOM05D004916 ORTHO05D006147 3.6e-10 69.3 86 45.3
FAN19G1053 Fragaria x ananassa HOM05D004916 ORTHO05D006147 3.6e-10 69.3 86 45.3
Haze_05162 Corylus avellana HOM05D004916 ORTHO05D006147 4.7e-10 68.9 242 30.2
Cfa004923 Carpinus fangiana HOM05D004916 ORTHO05D006147 8.0e-10 68.2 236 30.1
PSO210G3767 Papaver somniferum HOM05D004916 ORTHO05D006147 8.0e-10 68.2 213 32.4
Potri.014G111000 Populus trichocarpa HOM05D004916 ORTHO05D006147 8.0e-10 68.2 228 31.1
TAR636G0286 Trochodendron aralioides HOM05D004916 ORTHO05D006147 1.0e-09 67.8 211 30.8
COL.COLO4_23106 Corchorus olitorius HOM05D004916 ORTHO05D006147 1.4e-09 67.4 237 32.5
PSO761G0152 Papaver somniferum HOM05D004916 ORTHO05D006147 1.4e-09 67.4 213 32.4
TAR365G1046 Trochodendron aralioides HOM05D004916 ORTHO05D006147 1.4e-09 67.4 220 33.2
Lalb_Chr15g0077851 Lupinus albus HOM05D004916 ORTHO05D006147 1.8e-09 67.0 224 33.0
MD00G1137300 Malus domestica HOM05D004916 ORTHO05D006147 1.8e-09 67.0 89 44.9
Potri.002G185700 Populus trichocarpa HOM05D004916 ORTHO05D006147 1.8e-09 67.0 229 31.0
TAR633G1842 Trochodendron aralioides HOM05D004916 ORTHO05D006147 3.0e-09 66.2 188 33.0
QL12p035219 Quercus lobata HOM05D004916 ORTHO05D006147 4.0e-09 65.9 235 29.8
Duzib133G0180 Durio zibethinus HOM05D004916 ORTHO05D006147 5.2e-09 65.5 229 32.3
Gorai.007G118300 Gossypium raimondii HOM05D004916 ORTHO05D006147 5.2e-09 65.5 222 32.0
Gohir.D11G110600 Gossypium hirsutum HOM05D004916 ORTHO05D006147 6.8e-09 65.1 205 31.2
Atru.chr5.842 Acer truncatum HOM05D004916 ORTHO05D006147 1.2e-08 64.3 228 29.8
Cpa.g.sc57.33 Carica papaya HOM05D004916 ORTHO05D006147 1.2e-08 64.3 232 31.9
CiPaw.07G126700 Carya illinoinensis HOM05D004916 ORTHO05D006147 1.2e-08 64.3 226 32.3
Sabra14G0081700 Salix brachista HOM05D004916 ORTHO05D006147 1.2e-08 64.3 228 30.3
GSVIVG01028232001 Vitis vinifera HOM05D004916 ORTHO05D006147 1.2e-08 64.3 76 50.0
CiPaw.08G082200 Carya illinoinensis HOM05D004916 ORTHO05D006147 1.5e-08 63.9 96 43.8
Psat3g016360 Pisum sativum HOM05D004916 ORTHO05D006147 2.6e-08 63.2 83 45.8
TAR362G0057 Trochodendron aralioides HOM05D004916 ORTHO05D006147 4.4e-08 62.4 72 50.0
TAR362G0875 Trochodendron aralioides HOM05D004916 ORTHO05D006147 4.4e-08 62.4 72 50.0
DCAR_002943 Daucus carota HOM05D004916 ORTHO05D006147 5.7e-08 62.0 80 43.8
TWI23G0103 Tripterygium wilfordii HOM05D004916 ORTHO05D006147 5.7e-08 62.0 180 32.8
Gohir.A07G132300 Gossypium hirsutum HOM05D004916 ORTHO05D006147 9.8e-08 61.2 68 48.5
RcHm_v2.0_Chr3g0485631 Rosa chinensis HOM05D004916 ORTHO05D006147 9.8e-08 61.2 85 42.4
TWI14G0993 Tripterygium wilfordii HOM05D004916 ORTHO05D006147 1.3e-07 60.8 195 33.3
Gorai.001G148600 Gossypium raimondii HOM05D004916 ORTHO05D006147 2.2e-07 60.1 222 28.8
THA.LOC104815913 Tarenaya hassleriana HOM05D004916 ORTHO05D006147 2.8e-07 59.7 224 31.7
CSS0009622 Camellia sinensis var. sinensis HOM05D004916 ORTHO05D006147 3.7e-07 59.3 71 47.9
MBI18_g03855_MAGBIO Magnolia biondii HOM05D004916 ORTHO05D006147 4.8e-07 58.9 184 28.3
Aqoxy5G02859 Aquilegia oxysepala HOM05D004916 ORTHO05D006147 6.3e-07 58.5 202 30.7
CSS0004254 Camellia sinensis var. sinensis HOM05D004916 ORTHO05D006147 6.3e-07 58.5 72 45.8
PSO170G5346 Papaver somniferum HOM05D004916 ORTHO05D006147 1.1e-06 57.8 100 39.0
PSO357G0289 Papaver somniferum HOM05D004916 ORTHO05D006147 1.1e-06 57.8 100 39.0
Aa31LG5G1380 Aethionema arabicum HOM05D004916 ORTHO05D006147 5.4e-06 55.5 162 34.0
Gohir.D07G136500 Gossypium hirsutum HOM05D004916 ORTHO05D006147 5.4e-06 55.5 226 27.4


User provided reference genes

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