Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C04p00110 Brassica napus HOM05D004153 ORTHO05D004678 1.7e-94 349.4 183 100.0
BolC4t21658H Brassica oleracea HOM05D004153 ORTHO05D004678 4.7e-92 341.3 183 97.8
BcaC02g12543 Brassica carinata HOM05D004153 ORTHO05D004678 2.3e-91 339.0 183 97.8
A05p00190 Brassica napus HOM05D004153 ORTHO05D004678 3.1e-80 302.0 184 90.8
BraA05t19015Z Brassica rapa HOM05D004153 ORTHO05D004678 1.6e-79 299.7 184 90.2
BolC4t28778H Brassica oleracea HOM05D004153 ORTHO05D004678 5.4e-72 274.6 196 79.6
Sp4g29700 Schrenkiella parvula HOM05D004153 ORTHO05D004678 7.0e-72 274.2 198 79.8
AT2G47770 Arabidopsis thaliana HOM05D004153 ORTHO05D004678 2.0e-71 272.7 199 78.4
AL4G47340 Arabidopsis lyrata HOM05D004153 ORTHO05D004678 7.8e-71 270.8 199 77.4
Thhalv10001647m.g Eutrema salsugineum HOM05D004153 ORTHO05D004678 1.3e-70 270.0 197 78.7
A04p35060 Brassica napus HOM05D004153 ORTHO05D004678 3.9e-70 268.5 198 77.8
BraA04t18942Z Brassica rapa HOM05D004153 ORTHO05D004678 5.0e-70 268.1 198 77.8
BcaC02g06991 Brassica carinata HOM05D004153 ORTHO05D004678 8.6e-70 267.3 197 78.2
BcaB06g29494 Brassica carinata HOM05D004153 ORTHO05D004678 1.5e-69 266.5 197 77.7
BcaB06g29497 Brassica carinata HOM05D004153 ORTHO05D004678 1.5e-69 266.5 197 77.7
C04p72970 Brassica napus HOM05D004153 ORTHO05D004678 2.5e-69 265.8 197 77.7
CARHR143140 Cardamine hirsuta HOM05D004153 ORTHO05D004678 3.3e-69 265.4 199 76.9
Carub.0004s3048 Capsella rubella HOM05D004153 ORTHO05D004678 1.2e-68 263.5 199 75.9
Aa31LG1G29110 Aethionema arabicum HOM05D004153 ORTHO05D004678 2.0e-66 256.1 201 74.1
BcaB02g08747 Brassica carinata HOM05D004153 ORTHO05D004678 3.7e-65 251.9 184 79.9
BcaB06g29496 Brassica carinata HOM05D004153 ORTHO05D004678 1.3e-57 226.9 153 81.7
THA.LOC104802169 Tarenaya hassleriana HOM05D004153 ORTHO05D004678 1.2e-42 177.2 186 55.4
Manes.05G063900 Manihot esculenta HOM05D004153 ORTHO05D004678 5.3e-35 151.8 192 46.9
TWI23G0022 Tripterygium wilfordii HOM05D004153 ORTHO05D004678 1.5e-34 150.2 197 47.7
Atru.chr5.1180 Acer truncatum HOM05D004153 ORTHO05D004678 3.4e-34 149.1 159 52.8
COL.COLO4_23373 Corchorus olitorius HOM05D004153 ORTHO05D004678 4.5e-34 148.7 189 45.5
Duzib138G0244 Durio zibethinus HOM05D004153 ORTHO05D004678 7.6e-34 147.9 193 43.5
Potri.014G131400 Populus trichocarpa HOM05D004153 ORTHO05D004678 1.1e-32 144.1 196 44.9
Gohir.A12G010800 Gossypium hirsutum HOM05D004153 ORTHO05D004678 1.4e-32 143.7 188 45.7
FAN15G2246 Fragaria x ananassa HOM05D000802 ORTHO05D001074 1.9e-32 143.3 189 46.6
Gohir.D12G011200 Gossypium hirsutum HOM05D004153 ORTHO05D004678 1.9e-32 143.3 188 45.2
Gorai.008G011200 Gossypium raimondii HOM05D004153 ORTHO05D004678 1.9e-32 143.3 188 45.2
Potri.002G206100 Populus trichocarpa HOM05D004153 ORTHO05D004678 1.9e-32 143.3 194 44.8
SGA_v2.0_scaffold2G01404 Striga asiatica HOM05D004153 ORTHO05D004678 2.4e-32 142.9 185 41.1
Manes.04G056100 Manihot esculenta HOM05D004153 ORTHO05D004678 4.2e-32 142.1 158 49.4
CiPaw.07G106600 Carya illinoinensis HOM05D004153 ORTHO05D004678 1.6e-31 140.2 165 46.1
FAN15G0276 Fragaria x ananassa HOM05D004153 ORTHO05D004678 1.6e-31 140.2 189 46.0
Aqoxy2G02983 Aquilegia oxysepala HOM05D004153 ORTHO05D004678 2.7e-31 139.4 190 42.6
FvH4_2g25400 Fragaria vesca HOM05D004153 ORTHO05D004678 2.7e-31 139.4 187 45.5
FAN20G2301 Fragaria x ananassa HOM05D004153 ORTHO05D004678 2.7e-31 139.4 187 45.5
FAN24G2766 Fragaria x ananassa HOM05D004153 ORTHO05D004678 2.7e-31 139.4 187 45.5
FAN27G1399 Fragaria x ananassa HOM05D004153 ORTHO05D004678 4.6e-31 138.7 188 45.2
PGR119G1654 Punica granatum HOM05D004153 ORTHO05D004678 4.6e-31 138.7 187 46.5
PGR119G2063 Punica granatum HOM05D004153 ORTHO05D004678 4.6e-31 138.7 187 46.5
QL12p027168 Quercus lobata HOM05D004153 ORTHO05D004678 4.6e-31 138.7 187 44.4
Nn4g25841 Nelumbo nucifera HOM05D004153 ORTHO05D004678 6.0e-31 138.3 191 44.0
Oeu030970.1 Olea europaea HOM05D004153 ORTHO05D004678 6.0e-31 138.3 194 43.8
Sabra02G0153200 Salix brachista HOM05D004153 ORTHO05D004678 1.3e-30 137.1 167 45.5
EL10Ac6g15659 Beta vulgaris HOM05D004153 ORTHO05D004678 2.3e-30 136.3 166 45.2
Lalb_Chr18g0047121 Lupinus albus HOM05D004153 ORTHO05D004678 2.3e-30 136.3 172 47.7
RcHm_v2.0_Chr6g0293581 Rosa chinensis HOM05D004153 ORTHO05D004678 2.3e-30 136.3 190 46.3
Prupe.8G258500 Prunus persica HOM05D004153 ORTHO05D004678 3.0e-30 136.0 188 45.7
Lj1g0005892 Lotus japonicus HOM05D004153 ORTHO05D004678 1.5e-29 133.7 178 42.1
DCAR_002817 Daucus carota HOM05D004153 ORTHO05D004678 4.3e-29 132.1 155 46.5
Phvul.001G205900 Phaseolus vulgaris HOM05D004153 ORTHO05D004678 4.3e-29 132.1 186 42.5
Lj1C0T8 Lonicera japonica HOM05D004153 ORTHO05D004678 5.6e-29 131.7 158 49.4
MD03G1285300 Malus domestica HOM05D004153 ORTHO05D004678 5.6e-29 131.7 185 43.8
PSO017G2667 Papaver somniferum HOM05D004153 ORTHO05D004678 1.3e-28 130.6 189 39.2
PSO675G8366 Papaver somniferum HOM05D004153 ORTHO05D004678 1.3e-28 130.6 158 42.4
CANSAT01G1893 Cannabis sativa HOM05D004153 ORTHO05D004678 2.1e-28 129.8 188 39.9
Haze_04898 Corylus avellana HOM05D004153 ORTHO05D004678 3.7e-28 129.0 150 50.0
Migut.D00197 Erythranthe guttata HOM05D004153 ORTHO05D004678 3.7e-28 129.0 158 44.3
Nitab4.5_0000619g0070 Nicotiana tabacum HOM05D004153 ORTHO05D004678 1.1e-27 127.5 193 39.9
Nitab4.5_0003901g0020 Nicotiana tabacum HOM05D004153 ORTHO05D004678 1.1e-27 127.5 196 40.8
Lalb_Chr15g0078571 Lupinus albus HOM05D004153 ORTHO05D004678 1.8e-27 126.7 165 44.8
Solyc09g074910.1 Solanum lycopersicum HOM05D004153 ORTHO05D004678 2.4e-27 126.3 176 42.0
CAN.G339.31 Capsicum annuum HOM05D004153 ORTHO05D004678 4.0e-27 125.6 193 39.9
Ah.08g213200 Amaranthus hybridus HOM05D004153 ORTHO05D004678 5.3e-27 125.2 192 37.0
AUR62033157 Chenopodium quinoa HOM05D004153 ORTHO05D004678 5.3e-27 125.2 191 38.7
AUR62033169 Chenopodium quinoa HOM05D004153 ORTHO05D004678 5.3e-27 125.2 191 38.7
Hma1.2p1_0209F.1_g088580 Hydrangea macrophylla HOM05D004153 ORTHO05D004678 6.9e-27 124.8 152 47.4
SalBow3G0249 Salvia bowleyana HOM05D004153 ORTHO05D004678 6.9e-27 124.8 163 42.9
Sopen09g029730 Solanum pennellii HOM05D004153 ORTHO05D004678 6.9e-27 124.8 191 40.3
Ciclev10022120m.g Citrus clementina HOM05D004153 ORTHO05D004678 9.0e-27 124.4 193 43.0
Peaxi162Scf00067g00254 Petunia axillaris HOM05D004153 ORTHO05D004678 9.0e-27 124.4 192 41.1
Cc01_g20660 Coffea canephora HOM05D004153 ORTHO05D004678 1.5e-26 123.6 192 40.1
arahy.Tifrunner.gnm1.ann1.3INE6D Arachis hypogaea HOM05D004153 ORTHO05D004678 2.0e-26 123.2 149 43.0
AUR62008617 Chenopodium quinoa HOM05D004153 ORTHO05D004678 2.6e-26 122.9 194 37.6
Psat3g022920 Pisum sativum HOM05D004153 ORTHO05D004678 2.6e-26 122.9 165 41.8
Glyma.03G213300 Glycine max HOM05D004153 ORTHO05D004678 3.4e-26 122.5 189 39.2
Medtr7g108650 Medicago truncatula HOM05D004153 ORTHO05D004678 4.5e-26 122.1 165 41.8
VMungo1383G3271 Vigna mungo HOM05D004153 ORTHO05D004678 4.5e-26 122.1 160 41.9
ClCG09G006030 Citrullus lanatus HOM05D004153 ORTHO05D004678 5.8e-26 121.7 193 42.0
Cpa.g.sc9.210 Carica papaya HOM05D004153 ORTHO05D004678 7.6e-26 121.3 158 41.8
Sed0026977 Sechium edule HOM05D004153 ORTHO05D004678 9.9e-26 120.9 184 41.8
MBI18_g21824_MAGBIO Magnolia biondii HOM05D004153 ORTHO05D004678 1.3e-25 120.6 186 40.3
Thecc.01G297300 Theobroma cacao HOM05D004153 ORTHO05D004678 3.8e-25 119.0 158 43.0
CANSAT78G0904 Cannabis sativa HOM05D004153 ORTHO05D004678 8.4e-25 117.9 158 41.1
PGSC0003DMG400035200 Solanum tuberosum HOM05D004153 ORTHO05D004678 1.4e-24 117.1 186 38.2
Cfa005949 Carpinus fangiana HOM05D004153 ORTHO05D004678 2.4e-24 116.3 133 48.9
TAR365G1014 Trochodendron aralioides HOM05D004153 ORTHO05D004678 2.4e-24 116.3 136 47.1
CsaV3_3G014620 Cucumis sativus L. HOM05D004153 ORTHO05D004678 3.2e-24 115.9 160 41.2
Lj3P816T18 Lonicera japonica HOM05D004153 ORTHO05D004678 3.2e-24 115.9 151 40.4
Nn5g27910 Nelumbo nucifera HOM05D004153 ORTHO05D004678 3.2e-24 115.9 162 40.7
Sed0018454 Sechium edule HOM05D004153 ORTHO05D004678 4.2e-24 115.5 157 41.4
Haze_01203 Corylus avellana HOM05D004153 ORTHO05D004678 5.5e-24 115.2 159 40.9
Lsat_1_v5_gn_5_190540 Lactuca sativa HOM05D004153 ORTHO05D004678 1.2e-23 114.0 162 40.1
MELO3C006663.2 Cucumis melo HOM05D004153 ORTHO05D004678 1.6e-23 113.6 157 41.4
Atru.chr4.2837 Acer truncatum HOM05D004153 ORTHO05D004678 2.7e-23 112.8 178 39.9
BcaB01g03159 Brassica carinata HOM05D004153 ORTHO05D004678 2.7e-23 112.8 152 53.3
Prupe.1G136800 Prunus persica HOM05D004153 ORTHO05D004678 2.7e-23 112.8 143 42.7
unitig_0.g1178 Utricularia gibba HOM05D004153 ORTHO05D004678 3.5e-23 112.5 190 37.9
Ciclev10007035m.g Citrus clementina HOM05D004153 ORTHO05D004678 4.6e-23 112.1 158 39.2
Duzib052G0234 Durio zibethinus HOM05D004153 ORTHO05D004678 1.0e-22 110.9 157 40.1
RcHm_v2.0_Chr4g0422241 Rosa chinensis HOM05D004153 ORTHO05D004678 1.0e-22 110.9 159 39.0
HanXRQChr10g0284631 Helianthus annuus HOM05D004153 ORTHO05D004678 1.3e-22 110.5 156 39.1
TWI53G1241 Tripterygium wilfordii HOM05D004153 ORTHO05D004678 1.3e-22 110.5 154 39.0
CSS0027100 Camellia sinensis var. sinensis HOM05D004153 ORTHO05D004678 3.9e-22 109.0 153 38.6
Glyma.09G044900 Glycine max HOM05D004153 ORTHO05D004678 3.9e-22 109.0 157 39.5
Thecc.04G284700 Theobroma cacao HOM05D004153 ORTHO05D004678 3.9e-22 109.0 161 39.1
HPP92_016940 Vanilla planifolia HOM05D004153 ORTHO05D004678 6.7e-22 108.2 183 36.1
Lalb_Chr18g0051691 Lupinus albus HOM05D004153 ORTHO05D004678 1.1e-21 107.5 155 40.6
Lsat_1_v5_gn_9_1141 Lactuca sativa HOM05D004153 ORTHO05D004678 4.3e-21 105.5 168 38.1
VMungo1309G0390 Vigna mungo HOM05D004153 ORTHO05D004678 7.4e-21 104.8 156 39.1
Lj6g0000547 Lotus japonicus HOM05D004153 ORTHO05D004678 1.3e-20 104.0 156 39.1
Gorai.011G190200 Gossypium raimondii HOM05D004153 ORTHO05D004678 2.1e-20 103.2 159 37.7
FAN07G0961 Fragaria x ananassa HOM05D004153 ORTHO05D004678 2.8e-20 102.8 150 39.3
Gohir.D10G170400 Gossypium hirsutum HOM05D004153 ORTHO05D004678 2.8e-20 102.8 159 37.7
Sc13g0003480 Simmondsia chinensis HOM05D004153 ORTHO05D004678 2.8e-20 102.8 153 41.8
HanXRQChr01g0001291 Helianthus annuus HOM05D004153 ORTHO05D004678 3.7e-20 102.4 168 39.3
MELO3C016017.2 Cucumis melo HOM05D004153 ORTHO05D004678 4.8e-20 102.1 189 36.5
Eucgr.B01312 Eucalyptus grandis HOM05D004153 ORTHO05D004678 4.8e-20 102.1 166 34.9
Gohir.A10G164100 Gossypium hirsutum HOM05D004153 ORTHO05D004678 4.8e-20 102.1 159 37.7
Lj3P819T20 Lonicera japonica HOM05D004153 ORTHO05D004678 4.8e-20 102.1 136 39.0
Glyma.15G147800 Glycine max HOM05D004153 ORTHO05D004678 6.2e-20 101.7 157 36.9
Phvul.009G248000 Phaseolus vulgaris HOM05D004153 ORTHO05D004678 1.1e-19 100.9 156 37.8
MD11G1304700 Malus domestica HOM05D004153 ORTHO05D004678 1.8e-19 100.1 99 52.5
Sed0010104 Sechium edule HOM05D004153 ORTHO05D004678 1.8e-19 100.1 159 37.1
EL10Ac3g06596 Beta vulgaris HOM05D004153 ORTHO05D004678 5.3e-19 98.6 160 36.2
Rhsim01G0283900 Rhododendron simsii HOM05D004153 ORTHO05D004678 9.0e-19 97.8 163 38.7
ATR0796G004 Amborella trichopoda HOM05D004153 ORTHO05D004678 1.2e-18 97.4 161 36.0
TPR.G13834 Trifolium pratense HOM05D004153 ORTHO05D004678 1.2e-18 97.4 156 37.2
CDE02G0764 Ceratophyllum demersum HOM05D004153 ORTHO05D004678 5.8e-18 95.1 156 38.5
TWI73G1192 Tripterygium wilfordii HOM05D004153 ORTHO05D004678 5.8e-18 95.1 150 38.0
Psat1g153880 Pisum sativum HOM05D004153 ORTHO05D004678 1.0e-17 94.4 158 38.0
CsaV3_7G029110 Cucumis sativus L. HOM05D004153 ORTHO05D004678 2.2e-17 93.2 109 46.8
Actinidia21057 Actinidia chinensis HOM05D004153 ORTHO05D004678 4.9e-17 92.0 154 37.7
Actinidia24837 Actinidia chinensis HOM05D004153 ORTHO05D004678 7.1e-16 88.2 112 40.2
Rhsim04G0221600 Rhododendron simsii HOM05D004153 ORTHO05D004678 7.1e-16 88.2 154 39.0
Medtr2g436790 Medicago truncatula HOM05D004153 ORTHO05D004678 1.6e-15 87.0 158 36.1
PGR031G1230 Punica granatum HOM05D004153 ORTHO05D004678 4.6e-15 85.5 174 32.2
Potri.010G025200 Populus trichocarpa HOM05D004153 ORTHO05D004678 7.9e-15 84.7 157 35.0
Manes.03G195100 Manihot esculenta HOM05D004153 ORTHO05D004678 3.9e-14 82.4 137 34.3
SEGI_18828 Sequoiadendron giganteum HOM05D004153 ORTHO05D004678 1.6e-12 77.0 172 30.8
Ca_01937_v3 Cicer arietinum L. HOM05D000639 ORTHO05D004019 8.2e-12 74.7 95 42.1
Os05g0151200 Oryza sativa ssp. japonica HOM05D004153 ORTHO05D004678 5.3e-11 72.0 180 32.2
Mapoly0050s0023 Marchantia polymorpha HOM05D004153 ORTHO05D004678 2.2e-09 66.6 191 30.4
Zm00001eb354150 Zea mays HOM05D004153 ORTHO05D004678 3.8e-09 65.9 101 34.7
AagrBONN_evm.TU.Sc2ySwM_362.296 Anthoceros agrestis HOM05D004153 ORTHO05D004678 5.0e-09 65.5 182 30.2
Sabra10G0013900 Salix brachista HOM05D004153 ORTHO05D004678 1.9e-08 63.5 121 38.0
SMO115G0169 Selaginella moellendorffii HOM05D004153 ORTHO05D004678 1.2e-07 60.8 112 34.8
Lj1C32T8 Lonicera japonica HOM05D004153 ORTHO05D004678 3.6e-07 59.3 169 29.0
Pp3c24_14170 Physcomitrium patens HOM05D004153 ORTHO05D004678 3.6e-07 59.3 153 32.7
Dinv19716 Davidia involucrata HOM05D004153 ORTHO05D004678 6.1e-07 58.5 178 29.8
Pp3c10_6760 Physcomitrium patens HOM05D004153 ORTHO05D004678 5.1e-06 55.5 195 26.2
CBR_g30074 Chara braunii HOM05D004153 ORTHO05D004678 6.7e-06 55.1 144 26.4


User provided reference genes

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