Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C04p00050 Brassica napus HOM05D002779 ORTHO05D003074 4.3e-52 207.6 98 100.0
C08p29920 Brassica napus HOM05D002779 ORTHO05D003074 9.3e-47 189.9 99 93.9
BolC3t14082H Brassica oleracea HOM05D002779 ORTHO05D003074 1.7e-32 142.5 80 91.2
BcaC06g34294 Brassica carinata HOM05D002779 ORTHO05D003074 9.8e-12 73.6 76 60.5
BcaB07g30799 Brassica carinata HOM05D002779 ORTHO05D003074 2.8e-11 72.0 43 88.4
BcaC06g31422 Brassica carinata HOM05D002779 ORTHO05D003074 2.8e-11 72.0 43 88.4
A06p45350 Brassica napus HOM05D002779 ORTHO05D003074 2.8e-11 72.0 43 88.4
A09p22760 Brassica napus HOM05D002779 ORTHO05D003074 2.8e-11 72.0 43 88.4
C07p30660 Brassica napus HOM05D002779 ORTHO05D003074 2.8e-11 72.0 43 88.4
BolC7t43607H Brassica oleracea HOM05D002779 ORTHO05D003074 2.8e-11 72.0 43 88.4
BraA06t27404Z Brassica rapa HOM05D002779 ORTHO05D003074 2.8e-11 72.0 43 88.4
BraA09t37879Z Brassica rapa HOM05D002779 ORTHO05D003074 2.8e-11 72.0 43 88.4
BcaC04g21658 Brassica carinata HOM05D002779 ORTHO05D003074 8.3e-11 70.5 43 86.0
BolC9t55786H Brassica oleracea HOM05D002779 ORTHO05D003074 8.3e-11 70.5 43 86.0
C09p29240 Brassica napus HOM05D002779 ORTHO05D003074 1.4e-10 69.7 43 86.0
BcaC03g16919 Brassica carinata HOM05D002779 ORTHO05D003074 1.8e-10 69.3 43 83.7
A02p30670 Brassica napus HOM05D002779 ORTHO05D003074 1.8e-10 69.3 43 83.7
C02p48210 Brassica napus HOM05D002779 ORTHO05D003074 1.8e-10 69.3 43 83.7
BolC2t10854H Brassica oleracea HOM05D002779 ORTHO05D003074 1.8e-10 69.3 43 83.7
BraA02t08083Z Brassica rapa HOM05D002779 ORTHO05D003074 1.8e-10 69.3 43 83.7
Thhalv10001028m.g Eutrema salsugineum HOM05D002779 ORTHO05D003074 1.8e-10 69.3 43 83.7
Aa31LG9G5950 Aethionema arabicum HOM05D002779 ORTHO05D003074 2.4e-10 68.9 43 81.4
AT5G47030 Arabidopsis thaliana HOM05D002779 ORTHO05D003074 2.4e-10 68.9 43 83.7
Carub.0008s0079 Capsella rubella HOM05D002779 ORTHO05D003074 2.4e-10 68.9 43 83.7
CARHR174440 Cardamine hirsuta HOM05D002779 ORTHO05D003074 2.4e-10 68.9 43 81.4
AL8G11250 Arabidopsis lyrata HOM05D002779 ORTHO05D003074 7.0e-10 67.4 43 81.4
Sp2g11840 Schrenkiella parvula HOM05D002779 ORTHO05D003074 2.7e-09 65.5 43 81.4
Hma1.2p1_2060F.1_g312940 Hydrangea macrophylla HOM05D002779 ORTHO05D003074 7.7e-09 63.9 43 76.7
CiPaw.14G017200 Carya illinoinensis HOM05D002779 ORTHO05D003074 2.2e-08 62.4 43 74.4
MBI04_g03354_MAGBIO Magnolia biondii HOM05D002779 ORTHO05D003074 2.2e-08 62.4 42 76.2
Potri.003G086100 Populus trichocarpa HOM05D002779 ORTHO05D003074 2.9e-08 62.0 42 73.8
THA.LOC104807944 Tarenaya hassleriana HOM05D002779 ORTHO05D003074 2.9e-08 62.0 42 71.4
Cpa.g.sc106.98 Carica papaya HOM05D002779 ORTHO05D003074 3.8e-08 61.6 42 78.6
Manes.15G171800 Manihot esculenta HOM05D002779 ORTHO05D003074 3.8e-08 61.6 43 74.4
QL04p026324 Quercus lobata HOM05D002779 ORTHO05D003074 3.8e-08 61.6 42 73.8
THA.LOC104814450 Tarenaya hassleriana HOM05D002779 ORTHO05D003074 3.8e-08 61.6 42 69.0
COL.COLO4_06711 Corchorus olitorius HOM05D002779 ORTHO05D003074 5.0e-08 61.2 77 51.9
Lalb_Chr07g0195191 Lupinus albus HOM05D002779 ORTHO05D003074 6.5e-08 60.8 44 68.2
RcHm_v2.0_Chr7g0207921 Rosa chinensis HOM05D002779 ORTHO05D003074 6.5e-08 60.8 73 53.4
CDE11G0738 Ceratophyllum demersum HOM05D002779 ORTHO05D003074 8.5e-08 60.5 73 49.3
Haze_08319 Corylus avellana HOM05D002779 ORTHO05D003074 8.5e-08 60.5 42 73.8
Duzib138G0189 Durio zibethinus HOM05D002779 ORTHO05D003074 8.5e-08 60.5 43 72.1
Lalb_Chr12g0210361 Lupinus albus HOM05D002779 ORTHO05D003074 8.5e-08 60.5 43 69.8
Thecc.01G402000 Theobroma cacao HOM05D002779 ORTHO05D003074 8.5e-08 60.5 43 72.1
Thecc.03G236100 Theobroma cacao HOM05D002779 ORTHO05D003074 8.5e-08 60.5 43 69.8
COL.COLO4_12357 Corchorus olitorius HOM05D002779 ORTHO05D003074 1.1e-07 60.1 43 72.1
MD02G1222900 Malus domestica HOM05D002779 ORTHO05D003074 1.1e-07 60.1 43 69.8
Potri.014G053000 Populus trichocarpa HOM05D002779 ORTHO05D003074 1.1e-07 60.1 43 69.8
Rhsim01G0125800 Rhododendron simsii HOM05D002779 ORTHO05D003074 1.1e-07 60.1 43 72.1
Rhsim07G0039000 Rhododendron simsii HOM05D002779 ORTHO05D003074 1.1e-07 60.1 43 72.1
Rhsim07G0039100 Rhododendron simsii HOM05D002779 ORTHO05D003074 1.1e-07 60.1 43 72.1
TWI60G1337 Tripterygium wilfordii HOM05D002779 ORTHO05D003074 1.1e-07 60.1 73 53.4
vmacro13530 Vaccinium macrocarpon HOM05D002779 ORTHO05D003074 1.1e-07 60.1 43 72.1
arahy.Tifrunner.gnm1.ann1.68JCS7 Arachis hypogaea HOM05D002779 ORTHO05D003074 1.5e-07 59.7 43 65.1
arahy.Tifrunner.gnm1.ann1.JDGU33 Arachis hypogaea HOM05D002779 ORTHO05D003074 1.5e-07 59.7 43 65.1
arahy.Tifrunner.gnm1.ann1.KD7H5L Arachis hypogaea HOM05D002779 ORTHO05D003074 1.5e-07 59.7 43 65.1
arahy.Tifrunner.gnm1.ann1.KIA0G7 Arachis hypogaea HOM05D002779 ORTHO05D003074 1.5e-07 59.7 43 65.1
CSS0014088 Camellia sinensis var. sinensis HOM05D002779 ORTHO05D003074 1.5e-07 59.7 43 72.1
Eucgr.E01697 Eucalyptus grandis HOM05D002779 ORTHO05D003074 1.5e-07 59.7 42 71.4
Eucgr.E01702 Eucalyptus grandis HOM05D002779 ORTHO05D003074 1.5e-07 59.7 42 71.4
Lj8A599G17 Lonicera japonica HOM05D002779 ORTHO05D003074 1.5e-07 59.7 42 71.4
Zm00001eb322040 Zea mays HOM05D002779 ORTHO05D003074 1.5e-07 59.7 75 50.7
CSS0019711 Camellia sinensis var. sinensis HOM05D002779 ORTHO05D003074 1.9e-07 59.3 43 69.8
Ca_18081_v3 Cicer arietinum L. HOM05D002779 ORTHO05D003074 1.9e-07 59.3 43 65.1
Duzib133G0434 Durio zibethinus HOM05D002779 ORTHO05D003074 1.9e-07 59.3 43 72.1
Gohir.A12G211600 Gossypium hirsutum HOM05D002779 ORTHO05D003074 1.9e-07 59.3 78 51.3
QL12p007691 Quercus lobata HOM05D002779 ORTHO05D003074 1.9e-07 59.3 42 71.4
TAR375G0034 Trochodendron aralioides HOM05D002779 ORTHO05D003074 1.9e-07 59.3 42 73.8
TAR375G0865 Trochodendron aralioides HOM05D002779 ORTHO05D003074 1.9e-07 59.3 42 73.8
HPP92_020915 Vanilla planifolia HOM05D002779 ORTHO05D003074 1.9e-07 59.3 43 69.8
Actinidia12630 Actinidia chinensis HOM05D002779 ORTHO05D003074 2.5e-07 58.9 42 73.8
Sabra03G0056000 Salix brachista HOM05D002779 ORTHO05D003074 2.5e-07 58.9 43 72.1
Solyc05g052150.4 Solanum lycopersicum HOM05D002779 ORTHO05D003074 2.5e-07 58.9 43 67.4
Sopen05g030680 Solanum pennellii HOM05D002779 ORTHO05D003074 2.5e-07 58.9 43 67.4
CSS0018923 Camellia sinensis var. sinensis HOM05D002779 ORTHO05D003074 3.2e-07 58.5 43 69.8
Duzib205G1786 Durio zibethinus HOM05D002779 ORTHO05D003074 3.2e-07 58.5 42 69.0
Lalb_Chr12g0210371 Lupinus albus HOM05D002779 ORTHO05D003074 3.2e-07 58.5 43 67.4
Manes.17G020400 Manihot esculenta HOM05D002779 ORTHO05D003074 3.2e-07 58.5 43 67.4
RcHm_v2.0_Chr1g0344351 Rosa chinensis HOM05D002779 ORTHO05D003074 3.2e-07 58.5 43 72.1
Zm00001eb105550 Zea mays HOM05D002779 ORTHO05D003074 3.2e-07 58.5 75 49.3
ECA234G4094 Erigeron canadensis HOM05D002779 ORTHO05D003074 4.2e-07 58.2 42 69.0
Gorai.008G229700 Gossypium raimondii HOM05D002779 ORTHO05D003074 4.2e-07 58.2 75 52.0
HanXRQChr12g0383281 Helianthus annuus HOM05D002779 ORTHO05D003074 4.2e-07 58.2 42 66.7
HanXRQChr16g0521041 Helianthus annuus HOM05D002779 ORTHO05D003074 4.2e-07 58.2 42 69.0
Lsat_1_v5_gn_4_38461 Lactuca sativa HOM05D002779 ORTHO05D003074 4.2e-07 58.2 42 69.0
MD07G1092700 Malus domestica HOM05D002779 ORTHO05D003074 4.2e-07 58.2 43 69.8
PGR042G0988 Punica granatum HOM05D002779 ORTHO05D003074 4.2e-07 58.2 42 69.0
PGSC0003DMG401011647 Solanum tuberosum HOM05D002779 ORTHO05D003074 4.2e-07 58.2 42 69.0
GSVIVG01018340001 Vitis vinifera HOM05D002779 ORTHO05D003074 4.2e-07 58.2 43 65.1
Cfa011028 Carpinus fangiana HOM05D002779 ORTHO05D003074 5.5e-07 57.8 42 71.4
CDE02G0629 Ceratophyllum demersum HOM05D002779 ORTHO05D003074 5.5e-07 57.8 42 69.0
ClCG00G002480 Citrullus lanatus HOM05D002779 ORTHO05D003074 5.5e-07 57.8 42 71.4
ClCG05G002910 Citrullus lanatus HOM05D002779 ORTHO05D003074 5.5e-07 57.8 42 71.4
Haze_02897 Corylus avellana HOM05D002779 ORTHO05D003074 5.5e-07 57.8 42 69.0
Dinv44030 Davidia involucrata HOM05D002779 ORTHO05D003074 5.5e-07 57.8 42 69.0
Lsat_1_v5_gn_7_11940 Lactuca sativa HOM05D002779 ORTHO05D003074 5.5e-07 57.8 42 69.0
Lj8A591G17 Lonicera japonica HOM05D002779 ORTHO05D003074 5.5e-07 57.8 42 69.0
Nn6g33708 Nelumbo nucifera HOM05D002779 ORTHO05D003074 5.5e-07 57.8 43 69.8
Prupe.5G049800 Prunus persica HOM05D002779 ORTHO05D003074 5.5e-07 57.8 76 51.3
vmacro21075 Vaccinium macrocarpon HOM05D002779 ORTHO05D003074 5.5e-07 57.8 43 69.8
Atru.chr9.1135 Acer truncatum HOM05D002779 ORTHO05D003074 7.2e-07 57.4 43 69.8
CANSAT56G4182 Cannabis sativa HOM05D002779 ORTHO05D003074 7.2e-07 57.4 43 67.4
FAN03G3020 Fragaria x ananassa HOM05D002779 ORTHO05D003074 7.2e-07 57.4 42 71.4
MD06G1043000 Malus domestica HOM05D002779 ORTHO05D003074 7.2e-07 57.4 74 51.4
Nitab4.5_0001130g0090 Nicotiana tabacum HOM05D002779 ORTHO05D003074 7.2e-07 57.4 43 67.4
TWI81G0053 Tripterygium wilfordii HOM05D002779 ORTHO05D003074 7.2e-07 57.4 43 67.4
Ciclev10022328m.g Citrus clementina HOM05D002779 ORTHO05D003074 9.4e-07 57.0 43 67.4
Gohir.A06G116800 Gossypium hirsutum HOM05D002779 ORTHO05D003074 9.4e-07 57.0 43 69.8
Gohir.D12G214100 Gossypium hirsutum HOM05D002779 ORTHO05D003074 9.4e-07 57.0 43 65.1
Manes.05G057900 Manihot esculenta HOM05D002779 ORTHO05D003074 9.4e-07 57.0 42 69.0
Nitab4.5_0000103g0080 Nicotiana tabacum HOM05D002779 ORTHO05D003074 9.4e-07 57.0 43 67.4
Sed0000028 Sechium edule HOM05D002779 ORTHO05D003074 9.4e-07 57.0 42 71.4
Dinv43592 Davidia involucrata HOM05D002779 ORTHO05D003074 1.2e-06 56.6 42 69.0
Duzib068G0046 Durio zibethinus HOM05D002779 ORTHO05D003074 1.2e-06 56.6 42 66.7
FAN08G2802 Fragaria x ananassa HOM05D002779 ORTHO05D003074 1.2e-06 56.6 73 50.7
Gohir.A08G140500 Gossypium hirsutum HOM05D002779 ORTHO05D003074 1.2e-06 56.6 43 67.4
Gohir.D08G161500 Gossypium hirsutum HOM05D002779 ORTHO05D003074 1.2e-06 56.6 43 67.4
Gorai.004G167800 Gossypium raimondii HOM05D002779 ORTHO05D003074 1.2e-06 56.6 43 67.4
DCAR_025032 Daucus carota HOM05D002779 ORTHO05D003074 1.6e-06 56.2 42 64.3
Glyma.03G105300 Glycine max HOM05D002779 ORTHO05D003074 1.6e-06 56.2 42 64.3
Glyma.07G117000 Glycine max HOM05D002779 ORTHO05D003074 1.6e-06 56.2 42 64.3
SalBow3G2169 Salvia bowleyana HOM05D002779 ORTHO05D003074 1.6e-06 56.2 46 63.0
SalBow3G3736 Salvia bowleyana HOM05D002779 ORTHO05D003074 1.6e-06 56.2 46 63.0
Sed0013760 Sechium edule HOM05D002779 ORTHO05D003074 1.6e-06 56.2 42 69.0
Sopen03g025190 Solanum pennellii HOM05D002779 ORTHO05D003074 1.6e-06 56.2 43 67.4
TPR.G32155 Trifolium pratense HOM05D002779 ORTHO05D003074 1.6e-06 56.2 42 64.3
DCAR_021725 Daucus carota HOM05D002779 ORTHO05D003074 2.1e-06 55.8 42 66.7
FvH4_7g08910 Fragaria vesca HOM05D002779 ORTHO05D003074 2.1e-06 55.8 42 69.0
FAN01G0142 Fragaria x ananassa HOM05D002779 ORTHO05D003074 2.1e-06 55.8 42 69.0
FAN06G4650 Fragaria x ananassa HOM05D002779 ORTHO05D003074 2.1e-06 55.8 42 69.0
FAN10G2105 Fragaria x ananassa HOM05D002779 ORTHO05D003074 2.1e-06 55.8 42 69.0
FAN13G0012 Fragaria x ananassa HOM05D002779 ORTHO05D003074 2.1e-06 55.8 73 49.3
FAN13G1272 Fragaria x ananassa HOM05D002779 ORTHO05D003074 2.1e-06 55.8 73 49.3
Gohir.D08G065800 Gossypium hirsutum HOM05D002779 ORTHO05D003074 2.1e-06 55.8 43 67.4
Gorai.004G068100 Gossypium raimondii HOM05D002779 ORTHO05D003074 2.1e-06 55.8 43 67.4
PGR042G0599 Punica granatum HOM05D002779 ORTHO05D003074 2.1e-06 55.8 43 62.8
Atru.chr5.48 Acer truncatum HOM05D002779 ORTHO05D003074 2.7e-06 55.5 42 69.0
Atru.chr5.79 Acer truncatum HOM05D002779 ORTHO05D003074 2.7e-06 55.5 42 69.0
MELO3C006270.2 Cucumis melo HOM05D002779 ORTHO05D003074 2.7e-06 55.5 42 69.0
CsaV3_3G010470 Cucumis sativus L. HOM05D002779 ORTHO05D003074 2.7e-06 55.5 42 69.0
ECA236G2100 Erigeron canadensis HOM05D002779 ORTHO05D003074 2.7e-06 55.5 42 66.7
FAN10G3411 Fragaria x ananassa HOM05D002779 ORTHO05D003074 2.7e-06 55.5 42 69.0
Hund11294 Selenicereus undatus HOM05D002779 ORTHO05D003074 2.7e-06 55.5 41 65.9
Sc01g0007810 Simmondsia chinensis HOM05D002779 ORTHO05D003074 2.7e-06 55.5 41 65.9
SGA_v2.0_scaffold60G20861 Striga asiatica HOM05D002779 ORTHO05D003074 2.7e-06 55.5 42 66.7
Gohir.A08G056400 Gossypium hirsutum HOM05D002779 ORTHO05D003074 3.6e-06 55.1 43 67.4
Lj3g0004227 Lotus japonicus HOM05D002779 ORTHO05D003074 3.6e-06 55.1 42 61.9
Oeu044170.1 Olea europaea HOM05D002779 ORTHO05D003074 3.6e-06 55.1 46 63.0
PSO063G6956 Papaver somniferum HOM05D002779 ORTHO05D003074 3.6e-06 55.1 44 59.1
PSO782G0728 Papaver somniferum HOM05D002779 ORTHO05D003074 3.6e-06 55.1 44 59.1
Solyc03g095190.4 Solanum lycopersicum HOM05D002779 ORTHO05D003074 3.6e-06 55.1 43 65.1
SGA_v2.0_scaffold39G15201 Striga asiatica HOM05D002779 ORTHO05D003074 3.6e-06 55.1 42 64.3
SGA_v2.0_scaffold54G19571 Striga asiatica HOM05D002779 ORTHO05D003074 3.6e-06 55.1 42 64.3
CiPaw.12G059000 Carya illinoinensis HOM05D002779 ORTHO05D003074 4.7e-06 54.7 42 64.3
C05p50040 Brassica napus HOM05D002779 ORTHO05D003074 6.1e-06 54.3 40 72.5
CSS0045586 Camellia sinensis var. sinensis HOM05D002779 ORTHO05D003074 6.1e-06 54.3 43 67.4
CiPaw.13G022300 Carya illinoinensis HOM05D002779 ORTHO05D003074 6.1e-06 54.3 43 62.8
ATR1089G144 Amborella trichopoda HOM05D002779 ORTHO05D003074 8.0e-06 53.9 43 60.5
Aqoxy5G03176 Aquilegia oxysepala HOM05D002779 ORTHO05D003074 8.0e-06 53.9 45 60.0
Nn1g00686 Nelumbo nucifera HOM05D002779 ORTHO05D003074 8.0e-06 53.9 43 67.4
Psat4g222080 Pisum sativum HOM05D002779 ORTHO05D003074 8.0e-06 53.9 43 62.8
Prupe.2G118300 Prunus persica HOM05D002779 ORTHO05D003074 8.0e-06 53.9 43 62.8
Sabra14G0039900 Salix brachista HOM05D002779 ORTHO05D003074 8.0e-06 53.9 42 66.7


User provided reference genes

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