Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C03p93100 Brassica napus HOM05D003848 ORTHO05D004616 2.5e-113 412.9 366 100.0
A09p02120 Brassica napus HOM05D003848 ORTHO05D004616 3.4e-110 402.5 366 95.1
BolC9t53150H Brassica oleracea HOM05D003848 ORTHO05D004616 3.0e-106 389.4 370 93.0
BolC3t21613H Brassica oleracea HOM05D003848 ORTHO05D004616 1.9e-105 386.7 366 95.9
BcaC04g24009 Brassica carinata HOM05D003848 ORTHO05D004616 9.6e-105 384.4 367 92.6
BcaC01g01561 Brassica carinata HOM05D003848 ORTHO05D004616 2.6e-102 376.3 366 70.5
BraA09t35861Z Brassica rapa HOM05D003848 ORTHO05D004616 3.4e-102 375.9 366 91.8
BolC8t51344H Brassica oleracea HOM05D003848 ORTHO05D004616 5.1e-98 362.1 366 83.6
C08p37610 Brassica napus HOM05D003848 ORTHO05D004616 8.7e-98 361.3 366 89.1
BcaB01g02014 Brassica carinata HOM05D003848 ORTHO05D004616 9.7e-97 357.8 387 79.8
C09p02210 Brassica napus HOM05D003848 ORTHO05D004616 2.2e-93 346.7 366 92.6
A09p54740 Brassica napus HOM05D003848 ORTHO05D004616 7.9e-91 338.2 366 77.9
Sp6g02650 Schrenkiella parvula HOM05D003848 ORTHO05D004616 5.2e-82 308.9 424 70.5
Thhalv10028691m.g Eutrema salsugineum HOM05D003848 ORTHO05D004616 5.7e-81 305.4 421 70.8
AT4G02720 Arabidopsis thaliana HOM05D003848 ORTHO05D004616 1.3e-77 294.3 424 66.7
Carub.0006s3439 Capsella rubella HOM05D003848 ORTHO05D004616 2.9e-77 293.1 431 64.5
AL6G50290 Arabidopsis lyrata HOM05D003848 ORTHO05D004616 2.5e-76 290.0 424 68.4
CARHR251050 Cardamine hirsuta HOM05D003848 ORTHO05D004616 6.7e-74 282.0 413 64.9
Aa31LG5G2360 Aethionema arabicum HOM05D003848 ORTHO05D004616 9.7e-73 278.1 441 59.9
THA.LOC104801238 Tarenaya hassleriana HOM05D003848 ORTHO05D004616 1.7e-69 267.3 439 64.5
BcaC01g01558 Brassica carinata HOM05D003848 ORTHO05D004616 2.9e-69 266.5 134 100.0
BcaC01g01554 Brassica carinata HOM05D003848 ORTHO05D004616 8.5e-69 265.0 135 98.5
BcaC01g01560 Brassica carinata HOM05D003848 ORTHO05D004616 8.5e-69 265.0 135 98.5
C03p93080 Brassica napus HOM05D003848 ORTHO05D004616 1.9e-68 263.8 135 97.8
C03p93070 Brassica napus HOM05D003848 ORTHO05D004616 3.2e-68 263.1 134 98.5
C03p93150 Brassica napus HOM05D003848 ORTHO05D004616 5.5e-68 262.3 135 97.8
THA.LOC104825995 Tarenaya hassleriana HOM05D003848 ORTHO05D004616 1.2e-67 261.2 430 64.9
A09p30470 Brassica napus HOM05D003848 ORTHO05D004616 7.5e-65 251.9 134 94.8
COL.COLO4_09072 Corchorus olitorius HOM05D003848 ORTHO05D004616 1.1e-63 248.1 363 57.0
BolC3t21610H Brassica oleracea HOM05D003848 ORTHO05D004616 1.8e-63 247.3 126 97.6
Lj5g0005692 Lotus japonicus HOM05D003848 ORTHO05D004616 3.1e-63 246.5 405 62.0
Cfa006159 Carpinus fangiana HOM05D003848 ORTHO05D004616 9.1e-63 245.0 405 64.2
BraA04t17534Z Brassica rapa HOM05D003848 ORTHO05D004616 3.5e-62 243.0 131 94.7
CiPaw.08G106300 Carya illinoinensis HOM05D003848 ORTHO05D004616 7.7e-62 241.9 418 53.8
A04p19390 Brassica napus HOM05D003848 ORTHO05D004616 1.3e-61 241.1 126 96.0
Cfa003508 Carpinus fangiana HOM05D003848 ORTHO05D004616 1.3e-61 241.1 408 55.6
Haze_16066 Corylus avellana HOM05D003848 ORTHO05D004616 1.3e-61 241.1 395 66.6
C09p02220 Brassica napus HOM05D003848 ORTHO05D004616 2.2e-61 240.4 123 97.6
BcaC02g08380 Brassica carinata HOM05D003848 ORTHO05D004616 3.8e-61 239.6 127 96.1
C04p54970 Brassica napus HOM05D003848 ORTHO05D004616 3.8e-61 239.6 127 96.1
BolC4t27032H Brassica oleracea HOM05D003848 ORTHO05D004616 3.8e-61 239.6 127 96.1
Cpa.g.sc52.49 Carica papaya HOM05D003848 ORTHO05D004616 6.5e-61 238.8 443 57.6
Glyma.10G027400 Glycine max HOM05D003848 ORTHO05D004616 8.5e-61 238.4 416 64.2
Sabra05G0161100 Salix brachista HOM05D003848 ORTHO05D004616 1.5e-60 237.7 423 56.7
Haze_04691 Corylus avellana HOM05D003848 ORTHO05D004616 1.9e-60 237.3 407 60.0
Lalb_Chr06g0162931 Lupinus albus HOM05D003848 ORTHO05D004616 3.2e-60 236.5 423 61.5
Phvul.007G172800 Phaseolus vulgaris HOM05D003848 ORTHO05D004616 3.2e-60 236.5 413 62.5
Aqoxy2G03377 Aquilegia oxysepala HOM05D003848 ORTHO05D004616 5.5e-60 235.7 133 88.0
Psat4g156760 Pisum sativum HOM05D003848 ORTHO05D004616 5.5e-60 235.7 421 57.7
Glyma.02G146600 Glycine max HOM05D003848 ORTHO05D004616 7.2e-60 235.3 428 62.1
HanXRQChr01g0002971 Helianthus annuus HOM05D003848 ORTHO05D004616 7.2e-60 235.3 133 87.2
Potri.005G210900 Populus trichocarpa HOM05D003848 ORTHO05D004616 7.2e-60 235.3 419 57.8
unitig_0.g1040 Utricularia gibba HOM05D003848 ORTHO05D004616 7.2e-60 235.3 391 59.3
Nitab4.5_0005156g0010 Nicotiana tabacum HOM05D003848 ORTHO05D004616 9.5e-60 235.0 423 59.1
Ca_09749_v3 Cicer arietinum L. HOM05D003848 ORTHO05D004616 1.2e-59 234.6 440 62.0
Cc01_g10690 Coffea canephora HOM05D003848 ORTHO05D004616 1.6e-59 234.2 133 85.7
Potri.002G051500 Populus trichocarpa HOM05D003848 ORTHO05D004616 2.1e-59 233.8 423 57.9
Solyc11g071660.1 Solanum lycopersicum HOM05D003848 ORTHO05D004616 2.1e-59 233.8 434 57.6
Sopen11g029330 Solanum pennellii HOM05D003848 ORTHO05D004616 2.1e-59 233.8 434 57.6
Ah.02g110950 Amaranthus hybridus HOM05D003848 ORTHO05D004616 2.8e-59 233.4 133 88.0
Rhsim01G0273900 Rhododendron simsii HOM05D003848 ORTHO05D004616 3.6e-59 233.0 133 87.2
TWI59G1147 Tripterygium wilfordii HOM05D003848 ORTHO05D004616 3.6e-59 233.0 425 60.5
VMungo0720G2447 Vigna mungo HOM05D003848 ORTHO05D004616 3.6e-59 233.0 420 61.0
QL01p012613 Quercus lobata HOM05D003848 ORTHO05D004616 4.7e-59 232.6 134 87.3
PGSC0003DMG400046756 Solanum tuberosum HOM05D003848 ORTHO05D004616 4.7e-59 232.6 434 59.0
DCAR_000720 Daucus carota HOM05D003848 ORTHO05D004616 6.1e-59 232.3 136 86.0
TAR369G1095 Trochodendron aralioides HOM05D003848 ORTHO05D004616 6.1e-59 232.3 133 85.7
TAR633G0718 Trochodendron aralioides HOM05D003848 ORTHO05D004616 6.1e-59 232.3 133 85.7
Actinidia24902 Actinidia chinensis HOM05D003848 ORTHO05D004616 8.0e-59 231.9 133 88.0
vmacro18863 Vaccinium macrocarpon HOM05D003848 ORTHO05D004616 8.0e-59 231.9 133 86.5
Lsat_1_v5_gn_5_184160 Lactuca sativa HOM05D003848 ORTHO05D004616 1.0e-58 231.5 125 90.4
Nn1g02285 Nelumbo nucifera HOM05D003848 ORTHO05D004616 1.0e-58 231.5 133 85.0
TPR.G28157 Trifolium pratense HOM05D003848 ORTHO05D004616 1.0e-58 231.5 133 86.5
CDE06G2067 Ceratophyllum demersum HOM05D003848 ORTHO05D004616 1.4e-58 231.1 135 84.4
Nitab4.5_0006700g0010 Nicotiana tabacum HOM05D003848 ORTHO05D004616 1.4e-58 231.1 424 63.0
Pp3c9_17960 Physcomitrium patens HOM05D003848 ORTHO05D004616 1.4e-58 231.1 130 87.7
HPP92_009020 Vanilla planifolia HOM05D003848 ORTHO05D004616 1.4e-58 231.1 133 85.0
Lj1C175T4 Lonicera japonica HOM05D003848 ORTHO05D004616 1.8e-58 230.7 133 85.0
Lj2C1116T3 Lonicera japonica HOM05D003848 ORTHO05D004616 1.8e-58 230.7 133 85.0
vmacro19513 Vaccinium macrocarpon HOM05D003848 ORTHO05D004616 1.8e-58 230.7 133 85.7
Gorai.008G004000 Gossypium raimondii HOM05D003848 ORTHO05D004616 2.3e-58 230.3 453 55.8
Gohir.D12G004200 Gossypium hirsutum HOM05D003848 ORTHO05D004616 3.0e-58 229.9 450 56.7
Prupe.8G239200 Prunus persica HOM05D003848 ORTHO05D004616 3.0e-58 229.9 416 63.5
ECA248G3600 Erigeron canadensis HOM05D003848 ORTHO05D004616 5.2e-58 229.2 133 85.7
FAN22G1557 Fragaria x ananassa HOM05D003848 ORTHO05D004616 5.2e-58 229.2 134 83.6
RcHm_v2.0_Chr4g0409951 Rosa chinensis HOM05D003848 ORTHO05D004616 5.2e-58 229.2 134 83.6
EL10Ac5g10556 Beta vulgaris HOM05D003848 ORTHO05D004616 6.8e-58 228.8 133 85.7
GSVIVG01001165001 Vitis vinifera HOM05D003848 ORTHO05D004616 6.8e-58 228.8 390 65.1
Dinv32920 Davidia involucrata HOM05D003848 ORTHO05D004616 1.2e-57 228.0 133 83.5
MBI07_g03188_MAGBIO Magnolia biondii HOM05D003848 ORTHO05D004616 1.2e-57 228.0 133 83.5
Atru.chr5.1462 Acer truncatum HOM05D003848 ORTHO05D004616 1.5e-57 227.6 124 89.5
Oeu041715.2 Olea europaea HOM05D003848 ORTHO05D004616 2.0e-57 227.3 133 83.5
ATR0332G007 Amborella trichopoda HOM05D003848 ORTHO05D004616 2.6e-57 226.9 133 84.2
CANSAT01G1819 Cannabis sativa HOM05D003848 ORTHO05D004616 2.6e-57 226.9 125 88.0
SEGI_20713 Sequoiadendron giganteum HOM05D003848 ORTHO05D004616 2.6e-57 226.9 133 84.2
Sc24g0003320 Simmondsia chinensis HOM05D003848 ORTHO05D004616 2.6e-57 226.9 130 86.2
AUR62003538 Chenopodium quinoa HOM05D003848 ORTHO05D004616 3.4e-57 226.5 133 86.5
AUR62017852 Chenopodium quinoa HOM05D003848 ORTHO05D004616 3.4e-57 226.5 133 86.5
Cc00_g04130 Coffea canephora HOM05D003848 ORTHO05D004616 3.4e-57 226.5 383 64.5
PSO210G3188 Papaver somniferum HOM05D003848 ORTHO05D004616 3.4e-57 226.5 133 83.5
PSO832G2619 Papaver somniferum HOM05D003848 ORTHO05D004616 3.4e-57 226.5 133 83.5
ATR0824G270 Amborella trichopoda HOM05D003848 ORTHO05D004616 4.4e-57 226.1 133 84.2
arahy.Tifrunner.gnm1.ann1.ARWK2P Arachis hypogaea HOM05D003848 ORTHO05D004616 5.7e-57 225.7 458 57.0
CAN.G439.4 Capsicum annuum HOM05D003848 ORTHO05D004616 9.8e-57 224.9 424 58.0
ClCG10G016420 Citrullus lanatus HOM05D003848 ORTHO05D004616 9.8e-57 224.9 126 87.3
MELO3C009735.2 Cucumis melo HOM05D003848 ORTHO05D004616 9.8e-57 224.9 126 87.3
Mapoly0051s0007 Marchantia polymorpha HOM05D003848 ORTHO05D004616 1.3e-56 224.6 133 82.7
Medtr8g028640 Medicago truncatula HOM05D003848 ORTHO05D004616 1.3e-56 224.6 415 61.4
SHI27493 Sapria himalayana HOM05D004058 ORTHO05D001984 1.3e-56 224.6 126 87.3
SMO231G0049 Selaginella moellendorffii HOM05D003848 ORTHO05D004616 1.3e-56 224.6 127 87.4
Zm00001eb314820 Zea mays HOM05D003848 ORTHO05D004616 1.3e-56 224.6 131 85.5
arahy.Tifrunner.gnm1.ann1.X3NAFX Arachis hypogaea HOM05D003848 ORTHO05D004616 1.7e-56 224.2 453 49.0
Gohir.A12G004500 Gossypium hirsutum HOM05D003848 ORTHO05D004616 1.7e-56 224.2 456 54.8
SMO351G0411 Selaginella moellendorffii HOM05D003848 ORTHO05D004616 1.7e-56 224.2 134 83.6
AagrBONN_evm.TU.Sc2ySwM_344.5133 Anthoceros agrestis HOM05D003848 ORTHO05D004616 2.8e-56 223.4 126 86.5
CsaV3_3G039920 Cucumis sativus L. HOM05D003848 ORTHO05D004616 2.8e-56 223.4 124 87.9
AagrBONN_evm.TU.Sc2ySwM_362.1784 Anthoceros agrestis HOM05D003848 ORTHO05D004616 3.7e-56 223.0 133 82.7
Oeu028073.1 Olea europaea HOM05D003848 ORTHO05D004616 3.7e-56 223.0 387 65.4
Migut.D00312 Erythranthe guttata HOM05D003848 ORTHO05D004616 4.9e-56 222.6 416 55.3
MD11G1283600 Malus domestica HOM05D003848 ORTHO05D004616 4.9e-56 222.6 415 62.2
Hma1.2p1_0822F.1_g224390 Hydrangea macrophylla HOM05D003848 ORTHO05D004616 6.3e-56 222.2 410 55.4
Hund11854 Selenicereus undatus HOM05D003848 ORTHO05D004616 6.3e-56 222.2 126 86.5
CBR_g4136 Chara braunii HOM05D003848 ORTHO05D004616 8.3e-56 221.9 124 86.3
Thecc.01G276600 Theobroma cacao HOM05D003848 ORTHO05D004616 1.4e-55 221.1 455 54.7
Manes.05G077600 Manihot esculenta HOM05D003848 ORTHO05D004616 1.8e-55 220.7 439 60.8
MD03G1262900 Malus domestica HOM05D003848 ORTHO05D004616 2.4e-55 220.3 410 63.7
SGA_v2.0_scaffold1G00491 Striga asiatica HOM05D003848 ORTHO05D004616 4.1e-55 219.5 405 58.8
PGR119G0967 Punica granatum HOM05D003848 ORTHO05D004616 7.0e-55 218.8 450 60.2
FvH4_4g12190 Fragaria vesca HOM05D003848 ORTHO05D004616 4.5e-54 216.1 416 58.4
FAN07G0259 Fragaria x ananassa HOM05D003848 ORTHO05D004616 4.5e-54 216.1 419 58.0
FAN17G2080 Fragaria x ananassa HOM05D003848 ORTHO05D004616 7.8e-54 215.3 416 62.7
Ciclev10019827m.g Citrus clementina HOM05D003848 ORTHO05D004616 1.0e-53 214.9 420 61.7
FAN22G0164 Fragaria x ananassa HOM05D003848 ORTHO05D004616 1.7e-53 214.2 117 89.7
Manes.01G206800 Manihot esculenta HOM05D003848 ORTHO05D004616 1.7e-53 214.2 126 82.5
MSTRG.21553 Avicennia marina HOM05D003848 ORTHO05D004616 1.9e-52 210.7 456 51.3
Sed0011367 Sechium edule HOM05D003848 ORTHO05D004616 1.9e-52 210.7 448 58.3
Peaxi162Scf00217g00025 Petunia axillaris HOM05D003848 ORTHO05D004616 1.2e-51 208.0 410 60.5
TPR.G23082 Trifolium pratense HOM05D003848 ORTHO05D004616 2.8e-51 206.8 133 78.2
QL03p072399 Quercus lobata HOM05D003848 ORTHO05D004616 8.0e-51 205.3 362 59.1
Duzib177G1090 Durio zibethinus HOM05D003848 ORTHO05D004616 1.4e-50 204.5 133 78.2
BcaC03g13677 Brassica carinata HOM05D003848 ORTHO05D004616 9.8e-49 198.4 133 80.5
BcaC03g16168 Brassica carinata HOM05D003848 ORTHO05D004616 1.8e-47 194.1 105 93.3
Rhsim10G0030500 Rhododendron simsii HOM05D003848 ORTHO05D004616 5.0e-45 186.0 103 89.3
C03p93140 Brassica napus HOM05D003848 ORTHO05D004616 1.3e-40 171.4 84 100.0
MCO02G035 Micromonas commoda HOM05D003848 ORTHO05D004616 8.3e-40 168.7 107 79.4
CDE07G1463 Ceratophyllum demersum HOM05D003848 ORTHO05D004616 1.1e-39 168.3 135 65.2
BraA09t40884Z Brassica rapa HOM05D003848 ORTHO05D004616 1.4e-39 167.9 86 98.8
BraA09t38617Z Brassica rapa HOM05D003848 ORTHO05D004616 1.0e-37 161.8 86 95.3
C03p93060 Brassica napus HOM05D003848 ORTHO05D004616 1.1e-36 158.3 90 93.3
PRCOL_00001828 Prasinoderma coloniale HOM05D003848 ORTHO05D004616 2.5e-36 157.1 107 72.0
arahy.Tifrunner.gnm1.ann1.3GG3GM Arachis hypogaea HOM05D004461 ORTHO05D005543 4.3e-36 156.4 85 88.2
Ca_04836_v3 Cicer arietinum L. HOM05D001515 ORTHO05D004616 1.6e-35 154.5 78 94.9
SalBow4G2167 Salvia bowleyana HOM05D003848 ORTHO05D004616 2.1e-35 154.1 135 62.2
Nn4g26302 Nelumbo nucifera HOM05D003848 ORTHO05D004616 4.7e-35 152.9 80 91.2
Oeu017054.1 Olea europaea HOM05D004271 ORTHO05D006011 4.7e-35 152.9 89 85.4
C02p39120 Brassica napus HOM05D003848 ORTHO05D004616 1.4e-34 151.4 87 88.5
BolC2t09922H Brassica oleracea HOM05D003848 ORTHO05D004616 4.0e-34 149.8 87 87.4
Cre01.g032250 Chlamydomonas reinhardtii HOM05D003848 ORTHO05D004616 5.8e-33 146.0 100 68.0
SGA_v2.0_scaffold138G35328 Striga asiatica HOM05D003848 ORTHO05D004616 9.8e-33 145.2 125 62.4
BraA09t40883Z Brassica rapa HOM05D003848 ORTHO05D004616 6.4e-32 142.5 93 82.8
Hma1.2p1_0667F.1_g199770 Hydrangea macrophylla HOM05D003848 ORTHO05D004616 7.1e-31 139.0 93 75.3
Haze_27548 Corylus avellana HOM05D003848 ORTHO05D004616 2.5e-28 130.6 103 58.3
BNapus_Darmor_BZH_scaffold_38p02440 Brassica napus HOM05D003848 ORTHO05D004616 9.5e-28 128.6 70 94.3
BNapus_Darmor_BZH_scaffold_38p02460 Brassica napus HOM05D003848 ORTHO05D004616 6.2e-27 125.9 70 92.9
Os09g0455400 Oryza sativa ssp. japonica HOM05D003848 ORTHO05D004616 3.4e-25 120.2 70 84.3
BolC2t06954H Brassica oleracea HOM05D003848 ORTHO05D004616 5.8e-25 119.4 69 89.9
BcaC01g01557 Brassica carinata HOM05D003848 ORTHO05D004616 1.7e-21 107.8 86 73.3
unitig_0.g1042 Utricularia gibba HOM05D003848 ORTHO05D004616 9.6e-20 102.1 65 78.5
MD07G1100600 Malus domestica HOM05D003848 ORTHO05D004616 8.9e-18 95.5 90 62.2
Actinidia21120 Actinidia chinensis HOM05D003848 ORTHO05D004616 9.9e-17 92.0 56 82.1
Ca_05843_v3 Cicer arietinum L. HOM05D003848 ORTHO05D004616 9.3e-15 85.5 56 78.6
FAN22G1718 Fragaria x ananassa HOM05D003848 ORTHO05D004616 9.3e-15 85.5 40 97.5
vmacro19512 Vaccinium macrocarpon HOM05D003848 ORTHO05D004616 4.6e-14 83.2 106 46.2
BolC3t21614H Brassica oleracea HOM05D003848 ORTHO05D004616 1.7e-13 81.3 70 61.4
Prupe.6G167600 Prunus persica HOM05D003848 ORTHO05D004616 3.3e-12 77.0 53 73.6
Lj1A173G45 Lonicera japonica HOM05D003848 ORTHO05D004616 3.4e-09 67.0 72 55.6
FAN22G0082 Fragaria x ananassa HOM05D003848 ORTHO05D035678 1.3e-08 65.1 101 48.5
BNapus_Darmor_BZH_scaffold_38p02420 Brassica napus HOM05D003848 ORTHO05D004616 3.8e-08 63.5 34 88.2


User provided reference genes

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