Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C03p93080 Brassica napus HOM05D003848 ORTHO05D004616 5.7e-128 461.8 438 100.0
BcaC01g01560 Brassica carinata HOM05D003848 ORTHO05D004616 5.0e-108 395.6 438 92.5
C09p02220 Brassica napus HOM05D003848 ORTHO05D004616 2.3e-100 370.2 436 90.4
C03p93140 Brassica napus HOM05D003848 ORTHO05D004616 6.1e-98 362.1 387 99.7
BcaC01g01554 Brassica carinata HOM05D003848 ORTHO05D004616 1.0e-89 334.7 438 87.2
Sp6g02650 Schrenkiella parvula HOM05D003848 ORTHO05D004616 1.2e-85 321.2 442 75.3
Thhalv10028691m.g Eutrema salsugineum HOM05D003848 ORTHO05D004616 1.0e-84 318.2 442 74.2
BolC3t21610H Brassica oleracea HOM05D003848 ORTHO05D004616 6.6e-84 315.5 429 86.5
BcaB01g02014 Brassica carinata HOM05D003848 ORTHO05D004616 4.3e-83 312.8 442 68.1
CARHR251050 Cardamine hirsuta HOM05D003848 ORTHO05D004616 3.1e-81 306.6 179 90.5
Carub.0006s3439 Capsella rubella HOM05D003848 ORTHO05D004616 1.1e-78 298.1 444 73.2
AT4G02720 Arabidopsis thaliana HOM05D003848 ORTHO05D004616 2.1e-77 293.9 444 69.8
BolC8t51344H Brassica oleracea HOM05D003848 ORTHO05D004616 3.9e-76 289.7 442 61.8
C03p93150 Brassica napus HOM05D003848 ORTHO05D004616 5.1e-76 289.3 158 94.3
BraA04t17534Z Brassica rapa HOM05D003848 ORTHO05D004616 1.1e-75 288.1 179 89.9
AL6G50290 Arabidopsis lyrata HOM05D003848 ORTHO05D004616 1.9e-75 287.3 444 68.7
A04p19390 Brassica napus HOM05D003848 ORTHO05D004616 1.9e-75 287.3 431 66.6
Aa31LG5G2360 Aethionema arabicum HOM05D003848 ORTHO05D004616 6.2e-74 282.3 443 70.0
BcaC02g08380 Brassica carinata HOM05D003848 ORTHO05D004616 3.1e-73 280.0 174 90.8
BraA09t35861Z Brassica rapa HOM05D003848 ORTHO05D004616 5.8e-72 275.8 442 60.6
A09p02120 Brassica napus HOM05D003848 ORTHO05D004616 7.6e-72 275.4 442 61.1
BolC9t53150H Brassica oleracea HOM05D003848 ORTHO05D004616 2.2e-71 273.9 442 61.1
BolC4t27032H Brassica oleracea HOM05D003848 ORTHO05D004616 2.4e-70 270.4 442 67.4
C08p37610 Brassica napus HOM05D003848 ORTHO05D004616 9.2e-70 268.5 442 60.2
BcaC04g24009 Brassica carinata HOM05D003848 ORTHO05D004616 1.2e-69 268.1 442 59.7
C03p93070 Brassica napus HOM05D003848 ORTHO05D004616 1.3e-68 264.6 134 98.5
C03p93100 Brassica napus HOM05D003848 ORTHO05D004616 2.3e-68 263.8 135 97.8
BcaC01g01558 Brassica carinata HOM05D003848 ORTHO05D004616 1.5e-67 261.2 134 97.8
THA.LOC104801238 Tarenaya hassleriana HOM05D003848 ORTHO05D004616 1.5e-67 261.2 440 71.4
C04p54970 Brassica napus HOM05D003848 ORTHO05D004616 1.9e-67 260.8 173 84.4
BolC3t21613H Brassica oleracea HOM05D003848 ORTHO05D004616 9.6e-67 258.5 135 95.6
THA.LOC104825995 Tarenaya hassleriana HOM05D003848 ORTHO05D004616 1.6e-66 257.7 174 78.2
A09p30470 Brassica napus HOM05D003848 ORTHO05D004616 1.1e-65 255.0 134 95.5
C09p02210 Brassica napus HOM05D003848 ORTHO05D004616 1.1e-65 255.0 131 97.7
Cpa.g.sc52.49 Carica papaya HOM05D003848 ORTHO05D004616 1.2e-64 251.5 173 77.5
Nitab4.5_0005156g0010 Nicotiana tabacum HOM05D003848 ORTHO05D004616 1.2e-64 251.5 177 73.4
BcaC01g01561 Brassica carinata HOM05D003848 ORTHO05D004616 1.5e-64 251.1 132 95.5
Lsat_1_v5_gn_5_184160 Lactuca sativa HOM05D003848 ORTHO05D004616 4.4e-64 249.6 167 79.6
A09p54740 Brassica napus HOM05D003848 ORTHO05D004616 5.8e-64 249.2 439 49.7
HanXRQChr01g0002971 Helianthus annuus HOM05D003848 ORTHO05D004616 5.8e-64 249.2 169 78.7
Nitab4.5_0006700g0010 Nicotiana tabacum HOM05D003848 ORTHO05D004616 5.8e-64 249.2 177 72.9
Potri.005G210900 Populus trichocarpa HOM05D003848 ORTHO05D004616 5.8e-64 249.2 167 78.4
Ca_09749_v3 Cicer arietinum L. HOM05D003848 ORTHO05D004616 9.9e-64 248.4 175 75.4
Potri.002G051500 Populus trichocarpa HOM05D003848 ORTHO05D004616 9.9e-64 248.4 174 74.7
Aqoxy2G03377 Aquilegia oxysepala HOM05D003848 ORTHO05D004616 1.7e-63 247.7 175 74.9
Glyma.10G027400 Glycine max HOM05D003848 ORTHO05D004616 1.7e-63 247.7 173 74.6
Sabra05G0161100 Salix brachista HOM05D003848 ORTHO05D004616 1.7e-63 247.7 174 73.6
CiPaw.08G106300 Carya illinoinensis HOM05D003848 ORTHO05D004616 2.9e-63 246.9 427 60.0
CDE06G2067 Ceratophyllum demersum HOM05D003848 ORTHO05D004616 2.9e-63 246.9 169 78.1
Cc01_g10690 Coffea canephora HOM05D003848 ORTHO05D004616 2.9e-63 246.9 174 74.1
TWI59G1147 Tripterygium wilfordii HOM05D003848 ORTHO05D004616 3.8e-63 246.5 168 76.8
HPP92_009020 Vanilla planifolia HOM05D003848 ORTHO05D004616 3.8e-63 246.5 170 75.9
Atru.chr5.1462 Acer truncatum HOM05D003848 ORTHO05D004616 4.9e-63 246.1 164 77.4
Cc00_g04130 Coffea canephora HOM05D003848 ORTHO05D004616 4.9e-63 246.1 174 74.1
Migut.D00312 Erythranthe guttata HOM05D003848 ORTHO05D004616 4.9e-63 246.1 175 75.4
Nn1g02285 Nelumbo nucifera HOM05D003848 ORTHO05D004616 4.9e-63 246.1 170 75.9
unitig_0.g1040 Utricularia gibba HOM05D003848 ORTHO05D004616 4.9e-63 246.1 178 73.0
Glyma.02G146600 Glycine max HOM05D003848 ORTHO05D004616 6.4e-63 245.7 173 74.0
Cfa003508 Carpinus fangiana HOM05D003848 ORTHO05D004616 1.1e-62 245.0 175 76.6
VMungo0720G2447 Vigna mungo HOM05D003848 ORTHO05D004616 1.1e-62 245.0 173 74.0
MSTRG.21553 Avicennia marina HOM05D003848 ORTHO05D004616 1.4e-62 244.6 178 71.9
Ciclev10019827m.g Citrus clementina HOM05D003848 ORTHO05D004616 1.4e-62 244.6 173 74.6
ECA248G3600 Erigeron canadensis HOM05D003848 ORTHO05D004616 1.4e-62 244.6 180 73.9
Pp3c9_17960 Physcomitrium patens HOM05D003848 ORTHO05D004616 1.4e-62 244.6 171 76.0
Rhsim01G0273900 Rhododendron simsii HOM05D003848 ORTHO05D004616 1.9e-62 244.2 174 75.9
vmacro18863 Vaccinium macrocarpon HOM05D003848 ORTHO05D004616 1.9e-62 244.2 174 75.9
Phvul.007G172800 Phaseolus vulgaris HOM05D003848 ORTHO05D004616 2.4e-62 243.8 173 73.4
Actinidia24902 Actinidia chinensis HOM05D003848 ORTHO05D004616 3.2e-62 243.4 173 76.3
Ah.02g110950 Amaranthus hybridus HOM05D003848 ORTHO05D004616 4.2e-62 243.0 164 79.3
CAN.G439.4 Capsicum annuum HOM05D003848 ORTHO05D004616 4.2e-62 243.0 176 73.9
Cfa006159 Carpinus fangiana HOM05D003848 ORTHO05D004616 4.2e-62 243.0 175 75.4
Haze_04691 Corylus avellana HOM05D003848 ORTHO05D004616 4.2e-62 243.0 175 75.4
SGA_v2.0_scaffold1G00491 Striga asiatica HOM05D003848 ORTHO05D004616 4.2e-62 243.0 155 80.0
arahy.Tifrunner.gnm1.ann1.ARWK2P Arachis hypogaea HOM05D003848 ORTHO05D004616 5.4e-62 242.7 174 73.6
arahy.Tifrunner.gnm1.ann1.X3NAFX Arachis hypogaea HOM05D003848 ORTHO05D004616 5.4e-62 242.7 174 73.6
Hma1.2p1_0822F.1_g224390 Hydrangea macrophylla HOM05D003848 ORTHO05D004616 5.4e-62 242.7 175 73.1
MD11G1283600 Malus domestica HOM05D003848 ORTHO05D004616 5.4e-62 242.7 175 73.7
ATR0332G007 Amborella trichopoda HOM05D003848 ORTHO05D004616 7.1e-62 242.3 174 74.1
Oeu028073.1 Olea europaea HOM05D003848 ORTHO05D004616 7.1e-62 242.3 163 77.3
Lalb_Chr06g0162931 Lupinus albus HOM05D003848 ORTHO05D004616 9.3e-62 241.9 174 74.1
Medtr8g028640 Medicago truncatula HOM05D003848 ORTHO05D004616 9.3e-62 241.9 173 74.0
Oeu041715.2 Olea europaea HOM05D003848 ORTHO05D004616 9.3e-62 241.9 177 71.2
SEGI_20713 Sequoiadendron giganteum HOM05D003848 ORTHO05D004616 1.2e-61 241.5 174 75.9
vmacro19513 Vaccinium macrocarpon HOM05D003848 ORTHO05D004616 1.2e-61 241.5 174 74.7
GSVIVG01001165001 Vitis vinifera HOM05D003848 ORTHO05D004616 1.2e-61 241.5 174 73.0
QL01p012613 Quercus lobata HOM05D003848 ORTHO05D004616 2.1e-61 240.7 174 75.3
ATR0824G270 Amborella trichopoda HOM05D003848 ORTHO05D004616 2.7e-61 240.4 174 73.6
FvH4_4g12190 Fragaria vesca HOM05D003848 ORTHO05D004616 2.7e-61 240.4 174 71.8
FAN07G0259 Fragaria x ananassa HOM05D003848 ORTHO05D004616 2.7e-61 240.4 174 71.8
FAN22G1557 Fragaria x ananassa HOM05D003848 ORTHO05D004616 2.7e-61 240.4 174 71.8
Mapoly0051s0007 Marchantia polymorpha HOM05D003848 ORTHO05D004616 2.7e-61 240.4 167 75.4
Psat4g156760 Pisum sativum HOM05D003848 ORTHO05D004616 2.7e-61 240.4 173 74.0
RcHm_v2.0_Chr4g0409951 Rosa chinensis HOM05D003848 ORTHO05D004616 2.7e-61 240.4 175 71.4
TPR.G28157 Trifolium pratense HOM05D003848 ORTHO05D004616 2.7e-61 240.4 167 76.6
DCAR_000720 Daucus carota HOM05D003848 ORTHO05D004616 3.5e-61 240.0 181 74.6
Dinv32920 Davidia involucrata HOM05D003848 ORTHO05D004616 3.5e-61 240.0 168 74.4
FAN17G2080 Fragaria x ananassa HOM05D003848 ORTHO05D004616 3.5e-61 240.0 173 72.8
Lj5g0005692 Lotus japonicus HOM05D003848 ORTHO05D004616 3.5e-61 240.0 140 85.0
MD03G1262900 Malus domestica HOM05D003848 ORTHO05D004616 3.5e-61 240.0 166 76.5
SHI27493 Sapria himalayana HOM05D004058 ORTHO05D001984 3.5e-61 240.0 166 75.3
CANSAT01G1819 Cannabis sativa HOM05D003848 ORTHO05D004616 4.6e-61 239.6 167 76.0
Lj1C175T4 Lonicera japonica HOM05D003848 ORTHO05D004616 4.6e-61 239.6 170 74.1
Lj2C1116T3 Lonicera japonica HOM05D003848 ORTHO05D004616 4.6e-61 239.6 177 72.9
PGR119G0967 Punica granatum HOM05D003848 ORTHO05D004616 4.6e-61 239.6 177 72.3
Solyc11g071660.1 Solanum lycopersicum HOM05D003848 ORTHO05D004616 4.6e-61 239.6 178 72.5
Sopen11g029330 Solanum pennellii HOM05D003848 ORTHO05D004616 4.6e-61 239.6 178 72.5
PGSC0003DMG400046756 Solanum tuberosum HOM05D003848 ORTHO05D004616 6.0e-61 239.2 178 72.5
MBI07_g03188_MAGBIO Magnolia biondii HOM05D003848 ORTHO05D004616 7.8e-61 238.8 173 71.7
Zm00001eb314820 Zea mays HOM05D003848 ORTHO05D004616 7.8e-61 238.8 164 76.2
EL10Ac5g10556 Beta vulgaris HOM05D003848 ORTHO05D004616 1.0e-60 238.4 179 73.7
TAR633G0718 Trochodendron aralioides HOM05D003848 ORTHO05D004616 1.3e-60 238.0 173 72.8
Gohir.A12G004500 Gossypium hirsutum HOM05D003848 ORTHO05D004616 1.7e-60 237.7 173 73.4
Gohir.D12G004200 Gossypium hirsutum HOM05D003848 ORTHO05D004616 1.7e-60 237.7 173 73.4
Gorai.008G004000 Gossypium raimondii HOM05D003848 ORTHO05D004616 1.7e-60 237.7 173 73.4
Prupe.8G239200 Prunus persica HOM05D003848 ORTHO05D004616 1.7e-60 237.7 175 72.0
TAR369G1095 Trochodendron aralioides HOM05D003848 ORTHO05D004616 2.3e-60 237.3 173 72.8
AagrBONN_evm.TU.Sc2ySwM_362.1784 Anthoceros agrestis HOM05D003848 ORTHO05D004616 3.0e-60 236.9 167 75.4
SMO351G0411 Selaginella moellendorffii HOM05D003848 ORTHO05D004616 3.0e-60 236.9 168 74.4
Haze_16066 Corylus avellana HOM05D003848 ORTHO05D004616 3.9e-60 236.5 165 76.4
SMO231G0049 Selaginella moellendorffii HOM05D003848 ORTHO05D004616 3.9e-60 236.5 164 76.2
Thecc.01G276600 Theobroma cacao HOM05D003848 ORTHO05D004616 5.1e-60 236.1 173 74.0
Sc24g0003320 Simmondsia chinensis HOM05D003848 ORTHO05D004616 6.6e-60 235.7 177 72.3
PSO210G3188 Papaver somniferum HOM05D003848 ORTHO05D004616 1.1e-59 235.0 152 78.3
PSO832G2619 Papaver somniferum HOM05D003848 ORTHO05D004616 1.1e-59 235.0 152 78.3
CBR_g4136 Chara braunii HOM05D003848 ORTHO05D004616 1.5e-59 234.6 170 72.9
ClCG10G016420 Citrullus lanatus HOM05D003848 ORTHO05D004616 1.5e-59 234.6 163 74.2
MELO3C009735.2 Cucumis melo HOM05D003848 ORTHO05D004616 1.9e-59 234.2 163 74.2
AUR62017852 Chenopodium quinoa HOM05D003848 ORTHO05D004616 2.5e-59 233.8 178 71.9
AUR62003538 Chenopodium quinoa HOM05D003848 ORTHO05D004616 4.3e-59 233.0 180 70.6
CsaV3_3G039920 Cucumis sativus L. HOM05D003848 ORTHO05D004616 7.3e-59 232.3 158 75.3
Manes.05G077600 Manihot esculenta HOM05D003848 ORTHO05D004616 7.3e-59 232.3 172 70.9
COL.COLO4_09072 Corchorus olitorius HOM05D003848 ORTHO05D004616 1.3e-58 231.5 436 47.9
Sed0011367 Sechium edule HOM05D003848 ORTHO05D004616 1.3e-58 231.5 164 75.0
Hund11854 Selenicereus undatus HOM05D003848 ORTHO05D004616 8.1e-58 228.8 166 75.3
AagrBONN_evm.TU.Sc2ySwM_344.5133 Anthoceros agrestis HOM05D003848 ORTHO05D004616 1.4e-57 228.0 147 79.6
FAN22G0164 Fragaria x ananassa HOM05D003848 ORTHO05D004616 9.9e-56 221.9 157 74.5
Peaxi162Scf00217g00025 Petunia axillaris HOM05D003848 ORTHO05D004616 8.4e-55 218.8 158 74.1
Manes.01G206800 Manihot esculenta HOM05D003848 ORTHO05D004616 4.2e-54 216.5 170 70.0
Duzib177G1090 Durio zibethinus HOM05D003848 ORTHO05D004616 1.2e-53 214.9 164 72.0
TPR.G23082 Trifolium pratense HOM05D003848 ORTHO05D004616 5.1e-52 209.5 133 78.9
BcaC03g13677 Brassica carinata HOM05D003848 ORTHO05D004616 1.1e-49 201.8 133 81.2
QL03p072399 Quercus lobata HOM05D003848 ORTHO05D004616 6.9e-49 199.1 141 75.2
Rhsim10G0030500 Rhododendron simsii HOM05D003848 ORTHO05D004616 5.8e-48 196.1 144 75.0
BcaC03g16168 Brassica carinata HOM05D003848 ORTHO05D004616 6.4e-47 192.6 153 69.3
CDE07G1463 Ceratophyllum demersum HOM05D003848 ORTHO05D004616 2.5e-43 180.6 169 62.1
SalBow4G2167 Salvia bowleyana HOM05D003848 ORTHO05D004616 3.1e-41 173.7 175 58.3
BraA09t40884Z Brassica rapa HOM05D003848 ORTHO05D004616 7.6e-40 169.1 86 98.8
MCO02G035 Micromonas commoda HOM05D003848 ORTHO05D004616 1.3e-39 168.3 106 80.2
BraA09t38617Z Brassica rapa HOM05D003848 ORTHO05D004616 4.9e-39 166.4 86 97.7
Ca_04836_v3 Cicer arietinum L. HOM05D001515 ORTHO05D004616 1.9e-38 164.5 118 73.7
Nn4g26302 Nelumbo nucifera HOM05D003848 ORTHO05D004616 4.2e-38 163.3 105 79.0
SGA_v2.0_scaffold138G35328 Striga asiatica HOM05D003848 ORTHO05D004616 9.3e-38 162.2 155 59.4
arahy.Tifrunner.gnm1.ann1.3GG3GM Arachis hypogaea HOM05D004461 ORTHO05D005543 2.7e-37 160.6 125 69.6
Oeu017054.1 Olea europaea HOM05D004271 ORTHO05D006011 3.5e-37 160.2 132 68.2
PRCOL_00001828 Prasinoderma coloniale HOM05D003848 ORTHO05D004616 3.9e-36 156.8 103 73.8
C02p39120 Brassica napus HOM05D003848 ORTHO05D004616 5.7e-35 152.9 87 88.5
BolC2t09922H Brassica oleracea HOM05D003848 ORTHO05D004616 1.6e-34 151.4 87 87.4
BolC3t21614H Brassica oleracea HOM05D003848 ORTHO05D004616 6.9e-33 146.0 67 100.0
Cre01.g032250 Chlamydomonas reinhardtii HOM05D003848 ORTHO05D004616 2.0e-32 144.4 160 51.2
Hma1.2p1_0667F.1_g199770 Hydrangea macrophylla HOM05D003848 ORTHO05D004616 1.9e-30 137.9 169 50.3
BNapus_Darmor_BZH_scaffold_38p02440 Brassica napus HOM05D003848 ORTHO05D004616 3.5e-29 133.7 70 97.1
BNapus_Darmor_BZH_scaffold_38p02460 Brassica napus HOM05D003848 ORTHO05D004616 2.3e-28 131.0 70 95.7
Haze_27548 Corylus avellana HOM05D003848 ORTHO05D004616 8.7e-28 129.0 142 47.2
BolC2t06954H Brassica oleracea HOM05D003848 ORTHO05D004616 2.2e-26 124.4 69 92.8
Os09g0455400 Oryza sativa ssp. japonica HOM05D003848 ORTHO05D004616 2.8e-26 124.0 77 81.8
unitig_0.g1042 Utricularia gibba HOM05D003848 ORTHO05D004616 5.1e-20 103.2 65 78.5
Actinidia21120 Actinidia chinensis HOM05D003848 ORTHO05D004616 5.7e-19 99.8 160 45.6
MD07G1100600 Malus domestica HOM05D003848 ORTHO05D004616 6.3e-18 96.3 56 87.5
FAN22G1718 Fragaria x ananassa HOM05D003848 ORTHO05D004616 5.3e-17 93.2 80 63.8
BraA09t40883Z Brassica rapa HOM05D003848 ORTHO05D004616 1.3e-15 88.6 66 65.2
Ca_05843_v3 Cicer arietinum L. HOM05D003848 ORTHO05D004616 1.3e-15 88.6 56 80.4
vmacro19512 Vaccinium macrocarpon HOM05D003848 ORTHO05D004616 7.2e-14 82.8 106 46.2
Prupe.6G167600 Prunus persica HOM05D003848 ORTHO05D004616 7.9e-13 79.3 55 72.7
C03p93060 Brassica napus HOM05D003848 ORTHO05D004616 1.0e-12 79.0 59 64.4
BcaC01g01557 Brassica carinata HOM05D003848 ORTHO05D004616 4.8e-10 70.1 43 69.8
Lj1A173G45 Lonicera japonica HOM05D003848 ORTHO05D004616 1.4e-09 68.6 50 72.0
BNapus_Darmor_BZH_scaffold_38p02420 Brassica napus HOM05D003848 ORTHO05D004616 1.8e-09 68.2 34 94.1
FAN22G0082 Fragaria x ananassa HOM05D003848 ORTHO05D035678 2.9e-07 60.8 51 66.7


User provided reference genes

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