Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C03p93070 Brassica napus HOM05D003848 ORTHO05D004616 4.8e-70 267.7 134 100.0
BcaB01g02014 Brassica carinata HOM05D003848 ORTHO05D004616 1.1e-69 266.5 134 99.3
BcaC01g01554 Brassica carinata HOM05D003848 ORTHO05D004616 1.1e-69 266.5 134 99.3
BcaC01g01560 Brassica carinata HOM05D003848 ORTHO05D004616 1.1e-69 266.5 134 99.3
A09p02120 Brassica napus HOM05D003848 ORTHO05D004616 1.1e-69 266.5 134 99.3
C08p37610 Brassica napus HOM05D003848 ORTHO05D004616 1.1e-69 266.5 134 99.3
BolC8t51344H Brassica oleracea HOM05D003848 ORTHO05D004616 1.1e-69 266.5 134 99.3
BolC9t53150H Brassica oleracea HOM05D003848 ORTHO05D004616 1.1e-69 266.5 134 99.3
BraA09t35861Z Brassica rapa HOM05D003848 ORTHO05D004616 1.1e-69 266.5 134 99.3
C03p93080 Brassica napus HOM05D003848 ORTHO05D004616 2.4e-69 265.4 134 98.5
C03p93150 Brassica napus HOM05D003848 ORTHO05D004616 4.1e-69 264.6 134 99.3
Thhalv10028691m.g Eutrema salsugineum HOM05D003848 ORTHO05D004616 7.0e-69 263.8 134 97.8
BcaC01g01558 Brassica carinata HOM05D003848 ORTHO05D004616 9.1e-69 263.5 134 98.5
C03p93100 Brassica napus HOM05D003848 ORTHO05D004616 9.1e-69 263.5 134 98.5
CARHR251050 Cardamine hirsuta HOM05D003848 ORTHO05D004616 1.5e-68 262.7 134 97.0
Sp6g02650 Schrenkiella parvula HOM05D003848 ORTHO05D004616 1.5e-68 262.7 134 97.0
BcaC04g24009 Brassica carinata HOM05D003848 ORTHO05D004616 3.5e-68 261.5 134 97.8
A09p54740 Brassica napus HOM05D003848 ORTHO05D004616 1.3e-67 259.6 131 99.2
BolC3t21613H Brassica oleracea HOM05D003848 ORTHO05D004616 3.8e-67 258.1 134 96.3
C09p02210 Brassica napus HOM05D003848 ORTHO05D004616 8.5e-67 256.9 131 98.5
Carub.0006s3439 Capsella rubella HOM05D003848 ORTHO05D004616 1.1e-66 256.5 134 94.8
A09p30470 Brassica napus HOM05D003848 ORTHO05D004616 1.9e-66 255.8 134 95.5
AL6G50290 Arabidopsis lyrata HOM05D003848 ORTHO05D004616 3.2e-66 255.0 134 94.8
AT4G02720 Arabidopsis thaliana HOM05D003848 ORTHO05D004616 5.5e-66 254.2 134 94.0
BcaC01g01561 Brassica carinata HOM05D003848 ORTHO05D004616 1.2e-65 253.1 132 96.2
Aa31LG5G2360 Aethionema arabicum HOM05D003848 ORTHO05D004616 2.7e-65 251.9 134 92.5
BolC3t21610H Brassica oleracea HOM05D003848 ORTHO05D004616 3.0e-64 248.4 125 98.4
BraA04t17534Z Brassica rapa HOM05D003848 ORTHO05D004616 1.1e-63 246.5 131 95.4
A04p19390 Brassica napus HOM05D003848 ORTHO05D004616 4.4e-63 244.6 126 96.8
THA.LOC104801238 Tarenaya hassleriana HOM05D003848 ORTHO05D004616 5.7e-63 244.2 132 91.7
C09p02220 Brassica napus HOM05D003848 ORTHO05D004616 7.4e-63 243.8 123 98.4
BcaC02g08380 Brassica carinata HOM05D003848 ORTHO05D004616 1.3e-62 243.0 127 96.9
C04p54970 Brassica napus HOM05D003848 ORTHO05D004616 1.3e-62 243.0 127 96.9
BolC4t27032H Brassica oleracea HOM05D003848 ORTHO05D004616 1.3e-62 243.0 127 96.9
THA.LOC104825995 Tarenaya hassleriana HOM05D003848 ORTHO05D004616 1.7e-62 242.7 132 90.9
Potri.002G051500 Populus trichocarpa HOM05D003848 ORTHO05D004616 2.4e-61 238.8 132 88.6
Cpa.g.sc52.49 Carica papaya HOM05D003848 ORTHO05D004616 4.1e-61 238.0 132 89.4
Potri.005G210900 Populus trichocarpa HOM05D003848 ORTHO05D004616 4.1e-61 238.0 132 88.6
Sabra05G0161100 Salix brachista HOM05D003848 ORTHO05D004616 4.1e-61 238.0 132 87.9
Glyma.10G027400 Glycine max HOM05D003848 ORTHO05D004616 5.3e-61 237.7 132 87.9
Glyma.02G146600 Glycine max HOM05D003848 ORTHO05D004616 7.0e-61 237.3 132 87.9
Phvul.007G172800 Phaseolus vulgaris HOM05D003848 ORTHO05D004616 7.0e-61 237.3 132 87.9
Ca_09749_v3 Cicer arietinum L. HOM05D003848 ORTHO05D004616 1.2e-60 236.5 134 88.1
Aqoxy2G03377 Aquilegia oxysepala HOM05D003848 ORTHO05D004616 2.6e-60 235.3 132 87.9
VMungo0720G2447 Vigna mungo HOM05D003848 ORTHO05D004616 2.6e-60 235.3 132 87.1
HanXRQChr01g0002971 Helianthus annuus HOM05D003848 ORTHO05D004616 3.5e-60 235.0 132 87.1
unitig_0.g1040 Utricularia gibba HOM05D003848 ORTHO05D004616 3.5e-60 235.0 134 85.8
Ah.02g110950 Amaranthus hybridus HOM05D003848 ORTHO05D004616 4.5e-60 234.6 131 89.3
Lj5g0005692 Lotus japonicus HOM05D003848 ORTHO05D004616 4.5e-60 234.6 130 88.5
Manes.05G077600 Manihot esculenta HOM05D003848 ORTHO05D004616 4.5e-60 234.6 132 87.1
Nitab4.5_0005156g0010 Nicotiana tabacum HOM05D003848 ORTHO05D004616 4.5e-60 234.6 132 86.4
Nitab4.5_0006700g0010 Nicotiana tabacum HOM05D003848 ORTHO05D004616 4.5e-60 234.6 132 86.4
Migut.D00312 Erythranthe guttata HOM05D003848 ORTHO05D004616 5.9e-60 234.2 134 85.8
QL01p012613 Quercus lobata HOM05D003848 ORTHO05D004616 5.9e-60 234.2 133 88.0
Cfa006159 Carpinus fangiana HOM05D003848 ORTHO05D004616 7.7e-60 233.8 133 88.0
Cc00_g04130 Coffea canephora HOM05D003848 ORTHO05D004616 7.7e-60 233.8 132 85.6
Cc01_g10690 Coffea canephora HOM05D003848 ORTHO05D004616 7.7e-60 233.8 132 85.6
Haze_04691 Corylus avellana HOM05D003848 ORTHO05D004616 7.7e-60 233.8 133 88.0
DCAR_000720 Daucus carota HOM05D003848 ORTHO05D004616 7.7e-60 233.8 135 86.7
Nn1g02285 Nelumbo nucifera HOM05D003848 ORTHO05D004616 7.7e-60 233.8 132 86.4
Actinidia24902 Actinidia chinensis HOM05D003848 ORTHO05D004616 1.0e-59 233.4 132 88.6
CiPaw.08G106300 Carya illinoinensis HOM05D003848 ORTHO05D004616 1.0e-59 233.4 132 86.4
vmacro18863 Vaccinium macrocarpon HOM05D003848 ORTHO05D004616 1.0e-59 233.4 132 87.1
Lj1C175T4 Lonicera japonica HOM05D003848 ORTHO05D004616 1.3e-59 233.0 132 86.4
Lj2C1116T3 Lonicera japonica HOM05D003848 ORTHO05D004616 1.3e-59 233.0 132 86.4
Psat4g156760 Pisum sativum HOM05D003848 ORTHO05D004616 1.3e-59 233.0 132 87.1
TPR.G28157 Trifolium pratense HOM05D003848 ORTHO05D004616 1.3e-59 233.0 132 87.1
Lsat_1_v5_gn_5_184160 Lactuca sativa HOM05D003848 ORTHO05D004616 1.7e-59 232.6 124 91.1
Lalb_Chr06g0162931 Lupinus albus HOM05D003848 ORTHO05D004616 1.7e-59 232.6 133 87.2
Pp3c9_17960 Physcomitrium patens HOM05D003848 ORTHO05D004616 1.7e-59 232.6 128 89.1
Rhsim01G0273900 Rhododendron simsii HOM05D003848 ORTHO05D004616 1.7e-59 232.6 132 87.1
Cfa003508 Carpinus fangiana HOM05D003848 ORTHO05D004616 2.2e-59 232.3 133 87.2
Prupe.8G239200 Prunus persica HOM05D003848 ORTHO05D004616 2.2e-59 232.3 132 85.6
vmacro19513 Vaccinium macrocarpon HOM05D003848 ORTHO05D004616 2.2e-59 232.3 132 86.4
CDE06G2067 Ceratophyllum demersum HOM05D003848 ORTHO05D004616 2.9e-59 231.9 133 85.7
HPP92_009020 Vanilla planifolia HOM05D003848 ORTHO05D004616 2.9e-59 231.9 132 85.6
FvH4_4g12190 Fragaria vesca HOM05D003848 ORTHO05D004616 3.8e-59 231.5 133 85.0
FAN07G0259 Fragaria x ananassa HOM05D003848 ORTHO05D004616 3.8e-59 231.5 133 85.0
FAN17G2080 Fragaria x ananassa HOM05D003848 ORTHO05D004616 3.8e-59 231.5 133 85.0
FAN22G1557 Fragaria x ananassa HOM05D003848 ORTHO05D004616 3.8e-59 231.5 133 85.0
MD11G1283600 Malus domestica HOM05D003848 ORTHO05D004616 3.8e-59 231.5 132 85.6
PGR119G0967 Punica granatum HOM05D003848 ORTHO05D004616 3.8e-59 231.5 131 87.0
RcHm_v2.0_Chr4g0409951 Rosa chinensis HOM05D003848 ORTHO05D004616 3.8e-59 231.5 133 85.0
TWI59G1147 Tripterygium wilfordii HOM05D003848 ORTHO05D004616 3.8e-59 231.5 125 89.6
Hma1.2p1_0822F.1_g224390 Hydrangea macrophylla HOM05D003848 ORTHO05D004616 5.0e-59 231.1 134 85.1
Medtr8g028640 Medicago truncatula HOM05D003848 ORTHO05D004616 5.0e-59 231.1 132 86.4
arahy.Tifrunner.gnm1.ann1.ARWK2P Arachis hypogaea HOM05D003848 ORTHO05D004616 6.5e-59 230.7 133 85.0
arahy.Tifrunner.gnm1.ann1.X3NAFX Arachis hypogaea HOM05D003848 ORTHO05D004616 6.5e-59 230.7 133 85.0
Ciclev10019827m.g Citrus clementina HOM05D003848 ORTHO05D004616 6.5e-59 230.7 130 87.7
GSVIVG01001165001 Vitis vinifera HOM05D003848 ORTHO05D004616 6.5e-59 230.7 132 84.8
EL10Ac5g10556 Beta vulgaris HOM05D003848 ORTHO05D004616 8.5e-59 230.3 131 87.0
Dinv32920 Davidia involucrata HOM05D003848 ORTHO05D004616 8.5e-59 230.3 132 84.8
MBI07_g03188_MAGBIO Magnolia biondii HOM05D003848 ORTHO05D004616 8.5e-59 230.3 132 84.8
MD03G1262900 Malus domestica HOM05D003848 ORTHO05D004616 1.5e-58 229.6 129 86.0
TAR369G1095 Trochodendron aralioides HOM05D003848 ORTHO05D004616 1.5e-58 229.6 132 85.6
TAR633G0718 Trochodendron aralioides HOM05D003848 ORTHO05D004616 1.5e-58 229.6 132 85.6
Atru.chr5.1462 Acer truncatum HOM05D003848 ORTHO05D004616 1.9e-58 229.2 128 87.5
ATR0332G007 Amborella trichopoda HOM05D003848 ORTHO05D004616 1.9e-58 229.2 132 85.6
Oeu041715.2 Olea europaea HOM05D003848 ORTHO05D004616 1.9e-58 229.2 132 84.1
SEGI_20713 Sequoiadendron giganteum HOM05D003848 ORTHO05D004616 1.9e-58 229.2 131 86.3
CANSAT01G1819 Cannabis sativa HOM05D003848 ORTHO05D004616 2.5e-58 228.8 130 85.4
CAN.G439.4 Capsicum annuum HOM05D003848 ORTHO05D004616 2.5e-58 228.8 132 84.8
ECA248G3600 Erigeron canadensis HOM05D003848 ORTHO05D004616 2.5e-58 228.8 132 85.6
Oeu028073.1 Olea europaea HOM05D003848 ORTHO05D004616 2.5e-58 228.8 132 84.1
PSO210G3188 Papaver somniferum HOM05D003848 ORTHO05D004616 2.5e-58 228.8 132 84.8
PSO832G2619 Papaver somniferum HOM05D003848 ORTHO05D004616 2.5e-58 228.8 132 84.8
Solyc11g071660.1 Solanum lycopersicum HOM05D003848 ORTHO05D004616 2.5e-58 228.8 134 84.3
Sopen11g029330 Solanum pennellii HOM05D003848 ORTHO05D004616 2.5e-58 228.8 134 84.3
PGSC0003DMG400046756 Solanum tuberosum HOM05D003848 ORTHO05D004616 2.5e-58 228.8 134 84.3
ATR0824G270 Amborella trichopoda HOM05D003848 ORTHO05D004616 3.2e-58 228.4 132 85.6
MSTRG.21553 Avicennia marina HOM05D003848 ORTHO05D004616 4.2e-58 228.0 134 83.6
Sc24g0003320 Simmondsia chinensis HOM05D003848 ORTHO05D004616 4.2e-58 228.0 129 86.8
AUR62003538 Chenopodium quinoa HOM05D003848 ORTHO05D004616 5.5e-58 227.6 131 87.8
AUR62017852 Chenopodium quinoa HOM05D003848 ORTHO05D004616 5.5e-58 227.6 131 87.8
Haze_16066 Corylus avellana HOM05D003848 ORTHO05D004616 5.5e-58 227.6 128 86.7
ClCG10G016420 Citrullus lanatus HOM05D003848 ORTHO05D004616 1.6e-57 226.1 125 88.0
MELO3C009735.2 Cucumis melo HOM05D003848 ORTHO05D004616 1.6e-57 226.1 125 88.0
Gohir.A12G004500 Gossypium hirsutum HOM05D003848 ORTHO05D004616 1.6e-57 226.1 131 87.0
Gohir.D12G004200 Gossypium hirsutum HOM05D003848 ORTHO05D004616 1.6e-57 226.1 131 87.0
Gorai.008G004000 Gossypium raimondii HOM05D003848 ORTHO05D004616 1.6e-57 226.1 131 87.0
Mapoly0051s0007 Marchantia polymorpha HOM05D003848 ORTHO05D004616 1.6e-57 226.1 131 84.0
SMO231G0049 Selaginella moellendorffii HOM05D003848 ORTHO05D004616 1.6e-57 226.1 125 88.8
SMO351G0411 Selaginella moellendorffii HOM05D003848 ORTHO05D004616 1.6e-57 226.1 132 84.8
SGA_v2.0_scaffold1G00491 Striga asiatica HOM05D003848 ORTHO05D004616 1.6e-57 226.1 124 88.7
Thecc.01G276600 Theobroma cacao HOM05D003848 ORTHO05D004616 1.6e-57 226.1 131 87.0
SHI27493 Sapria himalayana HOM05D004058 ORTHO05D001984 2.1e-57 225.7 125 88.0
AagrBONN_evm.TU.Sc2ySwM_344.5133 Anthoceros agrestis HOM05D003848 ORTHO05D004616 4.7e-57 224.6 124 87.9
AagrBONN_evm.TU.Sc2ySwM_362.1784 Anthoceros agrestis HOM05D003848 ORTHO05D004616 4.7e-57 224.6 124 87.9
CsaV3_3G039920 Cucumis sativus L. HOM05D003848 ORTHO05D004616 4.7e-57 224.6 123 88.6
Zm00001eb314820 Zea mays HOM05D003848 ORTHO05D004616 4.7e-57 224.6 123 88.6
COL.COLO4_09072 Corchorus olitorius HOM05D003848 ORTHO05D004616 6.1e-57 224.2 131 86.3
Hund11854 Selenicereus undatus HOM05D003848 ORTHO05D004616 1.0e-56 223.4 125 87.2
CBR_g4136 Chara braunii HOM05D003848 ORTHO05D004616 1.8e-56 222.6 130 83.1
Sed0011367 Sechium edule HOM05D003848 ORTHO05D004616 1.8e-56 222.6 126 87.3
FAN22G0164 Fragaria x ananassa HOM05D003848 ORTHO05D004616 2.4e-53 212.2 116 89.7
Manes.01G206800 Manihot esculenta HOM05D003848 ORTHO05D004616 4.1e-53 211.5 125 82.4
Peaxi162Scf00217g00025 Petunia axillaris HOM05D003848 ORTHO05D004616 4.1e-53 211.5 115 90.4
TPR.G23082 Trifolium pratense HOM05D003848 ORTHO05D004616 1.2e-52 209.9 133 78.9
Duzib177G1090 Durio zibethinus HOM05D003848 ORTHO05D004616 2.2e-51 205.7 131 79.4
BcaC03g13677 Brassica carinata HOM05D003848 ORTHO05D004616 2.5e-50 202.2 133 81.2
BcaC03g16168 Brassica carinata HOM05D003848 ORTHO05D004616 2.3e-48 195.7 105 93.3
QL03p072399 Quercus lobata HOM05D003848 ORTHO05D004616 1.2e-47 193.4 133 76.7
Rhsim10G0030500 Rhododendron simsii HOM05D003848 ORTHO05D004616 7.0e-45 184.1 102 89.2
BraA09t40884Z Brassica rapa HOM05D003848 ORTHO05D004616 1.8e-40 169.5 86 98.8
C03p93140 Brassica napus HOM05D003848 ORTHO05D004616 2.3e-40 169.1 83 100.0
CDE07G1463 Ceratophyllum demersum HOM05D003848 ORTHO05D004616 2.3e-40 169.1 133 66.2
MCO02G035 Micromonas commoda HOM05D003848 ORTHO05D004616 4.0e-40 168.3 106 80.2
BraA09t38617Z Brassica rapa HOM05D003848 ORTHO05D004616 3.4e-39 165.2 86 96.5
PRCOL_00001828 Prasinoderma coloniale HOM05D003848 ORTHO05D004616 7.0e-37 157.5 107 72.0
SalBow4G2167 Salvia bowleyana HOM05D003848 ORTHO05D004616 2.7e-36 155.6 134 62.7
arahy.Tifrunner.gnm1.ann1.3GG3GM Arachis hypogaea HOM05D004461 ORTHO05D005543 7.8e-36 154.1 84 88.1
Oeu017054.1 Olea europaea HOM05D004271 ORTHO05D006011 1.3e-35 153.3 89 85.4
C02p39120 Brassica napus HOM05D003848 ORTHO05D004616 1.7e-35 152.9 87 88.5
Ca_04836_v3 Cicer arietinum L. HOM05D001515 ORTHO05D004616 2.9e-35 152.1 77 94.8
BolC2t09922H Brassica oleracea HOM05D003848 ORTHO05D004616 5.0e-35 151.4 87 87.4
Nn4g26302 Nelumbo nucifera HOM05D003848 ORTHO05D004616 8.6e-35 150.6 79 91.1
Cre01.g032250 Chlamydomonas reinhardtii HOM05D003848 ORTHO05D004616 1.6e-33 146.4 100 68.0
SGA_v2.0_scaffold138G35328 Striga asiatica HOM05D003848 ORTHO05D004616 1.6e-33 146.4 124 62.9
Hma1.2p1_0667F.1_g199770 Hydrangea macrophylla HOM05D003848 ORTHO05D004616 1.4e-32 143.3 93 77.4
BNapus_Darmor_BZH_scaffold_38p02440 Brassica napus HOM05D003848 ORTHO05D004616 3.2e-29 132.1 70 95.7
Haze_27548 Corylus avellana HOM05D003848 ORTHO05D004616 4.1e-29 131.7 112 54.5
BNapus_Darmor_BZH_scaffold_38p02460 Brassica napus HOM05D003848 ORTHO05D004616 2.0e-28 129.4 70 94.3
Os09g0455400 Oryza sativa ssp. japonica HOM05D003848 ORTHO05D004616 1.5e-26 123.2 70 85.7
BolC2t06954H Brassica oleracea HOM05D003848 ORTHO05D004616 1.9e-26 122.9 69 91.3
unitig_0.g1042 Utricularia gibba HOM05D003848 ORTHO05D004616 1.2e-20 103.6 65 78.5
MD07G1100600 Malus domestica HOM05D003848 ORTHO05D004616 1.9e-18 96.3 56 87.5
Actinidia21120 Actinidia chinensis HOM05D003848 ORTHO05D004616 3.3e-18 95.5 56 83.9
Ca_05843_v3 Cicer arietinum L. HOM05D003848 ORTHO05D004616 3.1e-16 89.0 56 80.4
FAN22G1718 Fragaria x ananassa HOM05D003848 ORTHO05D004616 1.7e-14 83.2 39 97.4
vmacro19512 Vaccinium macrocarpon HOM05D003848 ORTHO05D004616 4.9e-14 81.6 106 45.3
Prupe.6G167600 Prunus persica HOM05D003848 ORTHO05D004616 2.4e-13 79.3 55 72.7
BNapus_Darmor_BZH_scaffold_38p02420 Brassica napus HOM05D003848 ORTHO05D004616 1.2e-09 67.0 34 91.2


User provided reference genes

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