Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C03p93060 Brassica napus HOM05D003848 ORTHO05D004616 3.8e-48 194.5 99 100.0
A09p02120 Brassica napus HOM05D003848 ORTHO05D004616 2.3e-37 158.7 90 93.3
C03p93100 Brassica napus HOM05D003848 ORTHO05D004616 4.0e-37 157.9 90 93.3
BcaC01g01561 Brassica carinata HOM05D003848 ORTHO05D004616 2.0e-36 155.6 90 91.1
BolC3t21613H Brassica oleracea HOM05D003848 ORTHO05D004616 2.0e-36 155.6 90 91.1
BolC9t53150H Brassica oleracea HOM05D003848 ORTHO05D004616 3.7e-35 151.4 90 88.9
BcaC04g24009 Brassica carinata HOM05D003848 ORTHO05D004616 1.1e-34 149.8 90 88.9
BcaB01g02014 Brassica carinata HOM05D003848 ORTHO05D004616 1.2e-30 136.3 92 79.3
BraA09t35861Z Brassica rapa HOM05D003848 ORTHO05D004616 6.1e-30 134.0 90 82.2
C08p37610 Brassica napus HOM05D003848 ORTHO05D004616 4.4e-28 127.9 92 77.2
C09p02210 Brassica napus HOM05D003848 ORTHO05D004616 9.8e-28 126.7 90 77.8
BolC8t51344H Brassica oleracea HOM05D003848 ORTHO05D004616 1.8e-26 122.5 92 75.0
A09p54740 Brassica napus HOM05D003848 ORTHO05D004616 4.6e-25 117.9 92 72.8
BraA09t40883Z Brassica rapa HOM05D003848 ORTHO05D004616 1.3e-24 116.3 91 72.5
Sp6g02650 Schrenkiella parvula HOM05D003848 ORTHO05D004616 2.8e-22 108.6 87 70.1
Thhalv10028691m.g Eutrema salsugineum HOM05D003848 ORTHO05D004616 3.4e-20 101.7 95 63.2
Carub.0006s3439 Capsella rubella HOM05D003848 ORTHO05D004616 5.8e-20 100.9 86 68.6
BcaC01g01557 Brassica carinata HOM05D003848 ORTHO05D004616 8.3e-19 97.1 97 62.9
AT4G02720 Arabidopsis thaliana HOM05D003848 ORTHO05D004616 1.9e-18 95.9 89 64.0
AL6G50290 Arabidopsis lyrata HOM05D003848 ORTHO05D004616 9.2e-18 93.6 92 63.0
CARHR251050 Cardamine hirsuta HOM05D003848 ORTHO05D004616 3.5e-17 91.7 65 72.3
Aa31LG5G2360 Aethionema arabicum HOM05D003848 ORTHO05D004616 6.0e-17 90.9 93 61.3
THA.LOC104801238 Tarenaya hassleriana HOM05D003848 ORTHO05D004616 5.0e-16 87.8 85 61.2
THA.LOC104825995 Tarenaya hassleriana HOM05D003848 ORTHO05D004616 1.9e-15 85.9 66 68.2
Haze_16066 Corylus avellana HOM05D003848 ORTHO05D004616 1.6e-14 82.8 95 56.8
Cfa006159 Carpinus fangiana HOM05D003848 ORTHO05D004616 3.6e-14 81.6 95 54.7
Cfa003508 Carpinus fangiana HOM05D003848 ORTHO05D004616 1.1e-13 80.1 95 55.8
Cpa.g.sc52.49 Carica papaya HOM05D003848 ORTHO05D004616 1.4e-13 79.7 92 54.3
COL.COLO4_09072 Corchorus olitorius HOM05D003848 ORTHO05D004616 2.3e-13 79.0 75 60.0
Lalb_Chr06g0162931 Lupinus albus HOM05D003848 ORTHO05D004616 5.2e-13 77.8 93 55.9
Ca_09749_v3 Cicer arietinum L. HOM05D003848 ORTHO05D004616 8.9e-13 77.0 77 63.6
Lj5g0005692 Lotus japonicus HOM05D003848 ORTHO05D004616 1.2e-12 76.6 94 58.5
CiPaw.08G106300 Carya illinoinensis HOM05D003848 ORTHO05D004616 2.0e-12 75.9 101 53.5
Haze_04691 Corylus avellana HOM05D003848 ORTHO05D004616 3.4e-12 75.1 95 53.7
Thecc.01G276600 Theobroma cacao HOM05D003848 ORTHO05D004616 3.4e-12 75.1 85 54.1
arahy.Tifrunner.gnm1.ann1.ARWK2P Arachis hypogaea HOM05D003848 ORTHO05D004616 4.4e-12 74.7 111 50.5
Gohir.D12G004200 Gossypium hirsutum HOM05D003848 ORTHO05D004616 4.4e-12 74.7 85 51.8
Gorai.008G004000 Gossypium raimondii HOM05D003848 ORTHO05D004616 4.4e-12 74.7 85 51.8
C09p02220 Brassica napus HOM05D003848 ORTHO05D004616 5.8e-12 74.3 66 63.6
Gohir.A12G004500 Gossypium hirsutum HOM05D003848 ORTHO05D004616 5.8e-12 74.3 85 51.8
arahy.Tifrunner.gnm1.ann1.X3NAFX Arachis hypogaea HOM05D003848 ORTHO05D004616 7.5e-12 73.9 94 57.4
BcaC01g01554 Brassica carinata HOM05D003848 ORTHO05D004616 7.5e-12 73.9 59 64.4
BcaC01g01560 Brassica carinata HOM05D003848 ORTHO05D004616 7.5e-12 73.9 59 64.4
C03p93080 Brassica napus HOM05D003848 ORTHO05D004616 7.5e-12 73.9 59 64.4
C03p93140 Brassica napus HOM05D003848 ORTHO05D004616 7.5e-12 73.9 59 64.4
BolC3t21610H Brassica oleracea HOM05D003848 ORTHO05D004616 7.5e-12 73.9 59 64.4
BolC3t21614H Brassica oleracea HOM05D003848 ORTHO05D004616 7.5e-12 73.9 59 64.4
Solyc11g071660.1 Solanum lycopersicum HOM05D003848 ORTHO05D004616 7.5e-12 73.9 92 54.3
Sopen11g029330 Solanum pennellii HOM05D003848 ORTHO05D004616 7.5e-12 73.9 92 54.3
PGSC0003DMG400046756 Solanum tuberosum HOM05D003848 ORTHO05D004616 7.5e-12 73.9 92 54.3
SGA_v2.0_scaffold1G00491 Striga asiatica HOM05D003848 ORTHO05D004616 7.5e-12 73.9 66 60.6
Oeu028073.1 Olea europaea HOM05D003848 ORTHO05D004616 9.9e-12 73.6 86 47.7
Cc01_g10690 Coffea canephora HOM05D003848 ORTHO05D004616 1.7e-11 72.8 84 53.6
MELO3C009735.2 Cucumis melo HOM05D003848 ORTHO05D004616 2.2e-11 72.4 67 64.2
ClCG10G016420 Citrullus lanatus HOM05D003848 ORTHO05D004616 2.9e-11 72.0 67 62.7
Potri.005G210900 Populus trichocarpa HOM05D003848 ORTHO05D004616 3.7e-11 71.6 91 49.5
Sabra05G0161100 Salix brachista HOM05D003848 ORTHO05D004616 6.4e-11 70.9 72 54.2
CsaV3_3G039920 Cucumis sativus L. HOM05D003848 ORTHO05D004616 8.3e-11 70.5 82 59.8
Nitab4.5_0006700g0010 Nicotiana tabacum HOM05D003848 ORTHO05D004616 8.3e-11 70.5 99 50.5
Glyma.02G146600 Glycine max HOM05D003848 ORTHO05D004616 1.4e-10 69.7 94 53.2
Prupe.8G239200 Prunus persica HOM05D003848 ORTHO05D004616 1.4e-10 69.7 89 52.8
TWI59G1147 Tripterygium wilfordii HOM05D003848 ORTHO05D004616 1.9e-10 69.3 93 51.6
Psat4g156760 Pisum sativum HOM05D003848 ORTHO05D004616 2.4e-10 68.9 88 54.5
CAN.G439.4 Capsicum annuum HOM05D003848 ORTHO05D004616 3.2e-10 68.6 92 52.2
MSTRG.21553 Avicennia marina HOM05D003848 ORTHO05D004616 4.1e-10 68.2 99 48.5
Glyma.10G027400 Glycine max HOM05D003848 ORTHO05D004616 4.1e-10 68.2 94 53.2
HanXRQChr01g0002971 Helianthus annuus HOM05D003848 ORTHO05D004616 4.1e-10 68.2 83 54.2
Nitab4.5_0005156g0010 Nicotiana tabacum HOM05D003848 ORTHO05D004616 7.1e-10 67.4 96 51.0
PGR119G0967 Punica granatum HOM05D003848 ORTHO05D004616 7.1e-10 67.4 92 56.5
TAR369G1095 Trochodendron aralioides HOM05D003848 ORTHO05D004616 9.2e-10 67.0 87 54.0
Migut.D00312 Erythranthe guttata HOM05D003848 ORTHO05D004616 1.2e-09 66.6 82 51.2
Oeu041715.2 Olea europaea HOM05D003848 ORTHO05D004616 1.2e-09 66.6 87 47.1
Peaxi162Scf00217g00025 Petunia axillaris HOM05D003848 ORTHO05D004616 1.6e-09 66.2 94 48.9
TAR633G0718 Trochodendron aralioides HOM05D003848 ORTHO05D004616 1.6e-09 66.2 83 55.4
Medtr8g028640 Medicago truncatula HOM05D003848 ORTHO05D004616 2.1e-09 65.9 90 53.3
unitig_0.g1040 Utricularia gibba HOM05D003848 ORTHO05D004616 2.1e-09 65.9 93 49.5
GSVIVG01001165001 Vitis vinifera HOM05D003848 ORTHO05D004616 2.1e-09 65.9 91 50.5
Potri.002G051500 Populus trichocarpa HOM05D003848 ORTHO05D004616 2.7e-09 65.5 91 47.3
Lj1A173G45 Lonicera japonica HOM05D003848 ORTHO05D004616 3.5e-09 65.1 72 52.8
Cc00_g04130 Coffea canephora HOM05D003848 ORTHO05D004616 4.6e-09 64.7 54 59.3
Manes.05G077600 Manihot esculenta HOM05D003848 ORTHO05D004616 4.6e-09 64.7 91 51.6
Dinv32920 Davidia involucrata HOM05D003848 ORTHO05D004616 6.0e-09 64.3 78 52.6
Sed0011367 Sechium edule HOM05D003848 ORTHO05D004616 6.0e-09 64.3 99 47.5
Lj1C175T4 Lonicera japonica HOM05D003848 ORTHO05D004616 7.8e-09 63.9 72 52.8
Hma1.2p1_0822F.1_g224390 Hydrangea macrophylla HOM05D003848 ORTHO05D004616 1.0e-08 63.5 89 50.6
MD03G1262900 Malus domestica HOM05D003848 ORTHO05D004616 1.3e-08 63.2 92 48.9
Sc24g0003320 Simmondsia chinensis HOM05D003848 ORTHO05D004616 1.3e-08 63.2 55 61.8
VMungo0720G2447 Vigna mungo HOM05D003848 ORTHO05D004616 1.3e-08 63.2 94 45.7
arahy.Tifrunner.gnm1.ann1.3GG3GM Arachis hypogaea HOM05D004461 ORTHO05D005543 2.3e-08 62.4 76 52.6
Lj2C1116T3 Lonicera japonica HOM05D003848 ORTHO05D004616 3.9e-08 61.6 72 51.4
Nn1g02285 Nelumbo nucifera HOM05D003848 ORTHO05D004616 3.9e-08 61.6 88 51.1
Manes.01G206800 Manihot esculenta HOM05D003848 ORTHO05D004616 5.1e-08 61.2 91 46.2
ECA248G3600 Erigeron canadensis HOM05D003848 ORTHO05D004616 6.6e-08 60.8 72 55.6
Lsat_1_v5_gn_5_184160 Lactuca sativa HOM05D003848 ORTHO05D004616 6.6e-08 60.8 102 44.1
FAN07G0259 Fragaria x ananassa HOM05D003848 ORTHO05D004616 1.1e-07 60.1 80 52.5
Phvul.007G172800 Phaseolus vulgaris HOM05D003848 ORTHO05D004616 1.1e-07 60.1 92 44.6
RcHm_v2.0_Chr4g0409951 Rosa chinensis HOM05D003848 ORTHO05D004616 1.5e-07 59.7 66 56.1
QL03p072399 Quercus lobata HOM05D003848 ORTHO05D004616 1.9e-07 59.3 85 49.4
FvH4_4g12190 Fragaria vesca HOM05D003848 ORTHO05D004616 2.5e-07 58.9 80 52.5
MBI07_g03188_MAGBIO Magnolia biondii HOM05D003848 ORTHO05D004616 2.5e-07 58.9 90 47.8
MD11G1283600 Malus domestica HOM05D003848 ORTHO05D004616 2.5e-07 58.9 92 46.7
FAN17G2080 Fragaria x ananassa HOM05D003848 ORTHO05D004616 5.6e-07 57.8 80 52.5
SEGI_20713 Sequoiadendron giganteum HOM05D003848 ORTHO05D004616 1.2e-06 56.6 67 49.3
DCAR_000720 Daucus carota HOM05D003848 ORTHO05D004616 1.6e-06 56.2 80 46.2
Actinidia24902 Actinidia chinensis HOM05D003848 ORTHO05D004616 2.1e-06 55.8 93 45.2
Aqoxy2G03377 Aquilegia oxysepala HOM05D003848 ORTHO05D004616 2.8e-06 55.5 105 43.8
FAN22G0082 Fragaria x ananassa HOM05D003848 ORTHO05D035678 3.6e-06 55.1 81 50.6
FAN22G1718 Fragaria x ananassa HOM05D003848 ORTHO05D004616 3.6e-06 55.1 81 50.6
FAN22G0164 Fragaria x ananassa HOM05D003848 ORTHO05D004616 4.7e-06 54.7 81 50.6
ATR0332G007 Amborella trichopoda HOM05D003848 ORTHO05D004616 6.2e-06 54.3 80 48.8
PSO210G3188 Papaver somniferum HOM05D003848 ORTHO05D004616 6.2e-06 54.3 69 50.7


User provided reference genes

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