Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C03p92680 Brassica napus HOM05D004137 ORTHO05D004804 4.3e-36 154.1 75 100.0
BcaC01g01518 Brassica carinata HOM05D004137 ORTHO05D004804 1.7e-35 152.1 75 98.7
BolC3t21580H Brassica oleracea HOM05D004137 ORTHO05D004804 4.8e-35 150.6 75 97.3
A08p00680 Brassica napus HOM05D004137 ORTHO05D004804 4.7e-30 134.0 71 90.1
BraA08t32126Z Brassica rapa HOM05D004137 ORTHO05D004804 4.7e-30 134.0 71 90.1
Thhalv10011858m.g Eutrema salsugineum HOM05D004137 ORTHO05D004804 5.1e-29 130.6 74 82.4
BcaC08g43620 Brassica carinata HOM05D004137 ORTHO05D004804 1.7e-27 125.6 71 81.7
A06p00220 Brassica napus HOM05D004137 ORTHO05D004804 1.7e-27 125.6 71 81.7
C06p10340 Brassica napus HOM05D004137 ORTHO05D004804 1.7e-27 125.6 71 81.7
BolC6t36110H Brassica oleracea HOM05D004137 ORTHO05D004804 1.7e-27 125.6 71 81.7
BraA06t23238Z Brassica rapa HOM05D004137 ORTHO05D004804 1.7e-27 125.6 71 81.7
Sp1g41045 Schrenkiella parvula HOM05D004137 ORTHO05D004804 1.7e-27 125.6 74 82.4
AL1G63420 Arabidopsis lyrata HOM05D004137 ORTHO05D004804 1.4e-26 122.5 74 75.7
BcaB04g16959 Brassica carinata HOM05D004137 ORTHO05D004804 1.8e-26 122.1 71 84.5
Carub.0001s4388 Capsella rubella HOM05D004137 ORTHO05D004804 2.4e-26 121.7 74 74.3
CARHR045030 Cardamine hirsuta HOM05D004137 ORTHO05D004804 4.1e-26 120.9 74 73.0
AT1G55365 Arabidopsis thaliana HOM05D004137 ORTHO05D004804 2.0e-25 118.6 74 73.0
Aa31LG10G1170 Aethionema arabicum HOM05D004137 ORTHO05D004804 2.6e-20 101.7 74 66.2
BcaC08g44196 Brassica carinata HOM05D004137 ORTHO05D004804 4.4e-20 100.9 73 65.8
BolC6t36802H Brassica oleracea HOM05D004137 ORTHO05D004804 4.4e-20 100.9 73 65.8
BcaB02g10824 Brassica carinata HOM05D004137 ORTHO05D004804 3.7e-19 97.8 73 65.8
A05p17500 Brassica napus HOM05D004137 ORTHO05D004804 4.8e-19 97.4 73 64.4
THA.LOC104810322 Tarenaya hassleriana HOM05D004137 ORTHO05D004804 1.2e-17 92.8 71 60.6
QL01p003617 Quercus lobata HOM05D004137 ORTHO05D004804 1.4e-13 79.3 71 54.9
CANSAT11G0501 Cannabis sativa HOM05D004137 ORTHO05D004804 8.8e-13 76.6 69 53.6
TWI34G1879 Tripterygium wilfordii HOM05D004137 ORTHO05D004804 1.5e-12 75.9 68 50.0
A05p35990 Brassica napus HOM05D004137 ORTHO05D004804 2.0e-12 75.5 71 53.5
BraA05t22405Z Brassica rapa HOM05D004137 ORTHO05D004804 2.0e-12 75.5 71 53.5
Haze_22939 Corylus avellana HOM05D004137 ORTHO05D004804 2.0e-12 75.5 68 52.9
Manes.03G087303 Manihot esculenta HOM05D004137 ORTHO05D004804 2.0e-12 75.5 74 45.9
Prupe.6G003100 Prunus persica HOM05D004137 ORTHO05D004804 2.6e-12 75.1 69 50.7
Atru.chr3.2107 Acer truncatum HOM05D004137 ORTHO05D004804 3.4e-12 74.7 69 50.7
FAN16G1350 Fragaria x ananassa HOM05D004137 ORTHO05D004804 3.4e-12 74.7 69 49.3
FAN21G2465 Fragaria x ananassa HOM05D004137 ORTHO05D004804 3.4e-12 74.7 69 49.3
CiPaw.13G177400 Carya illinoinensis HOM05D004137 ORTHO05D004804 4.4e-12 74.3 70 50.0
TWI60G1175 Tripterygium wilfordii HOM05D004137 ORTHO05D004804 7.5e-12 73.6 67 47.8
Manes.15G109500 Manihot esculenta HOM05D004137 ORTHO05D004804 9.7e-12 73.2 71 46.5
FAN25G2990 Fragaria x ananassa HOM05D004137 ORTHO05D004804 1.7e-11 72.4 69 47.8
Potri.001G003500 Populus trichocarpa HOM05D004137 ORTHO05D004804 1.7e-11 72.4 73 49.3
Cpa.g.c44905 Carica papaya HOM05D004137 ORTHO05D004804 3.7e-11 71.2 62 50.0
RcHm_v2.0_Chr5g0083831 Rosa chinensis HOM05D004137 ORTHO05D004804 3.7e-11 71.2 74 44.6
MD11G1003200 Malus domestica HOM05D004137 ORTHO05D004804 8.3e-11 70.1 70 47.1
HanXRQChr02g0057501 Helianthus annuus HOM05D004137 ORTHO05D004804 1.4e-10 69.3 70 50.0
Sp3g11710 Schrenkiella parvula HOM05D004137 ORTHO05D004804 3.1e-10 68.2 63 50.8
Ciclev10017215m.g Citrus clementina HOM05D004137 ORTHO05D004804 4.1e-10 67.8 70 50.0
FAN11G0915 Fragaria x ananassa HOM05D004137 ORTHO05D004804 4.1e-10 67.8 62 50.0
Hma1.2p1_0241F.1_g100550 Hydrangea macrophylla HOM05D004137 ORTHO05D004804 5.3e-10 67.4 70 42.9
Thhalv10022151m.g Eutrema salsugineum HOM05D004137 ORTHO05D004804 7.0e-10 67.0 60 53.3
CSS0017288 Camellia sinensis var. sinensis HOM05D004137 ORTHO05D004804 9.1e-10 66.6 62 50.0
FvH4_3g45760 Fragaria vesca HOM05D004137 ORTHO05D004804 9.1e-10 66.6 62 48.4
Potri.003G221500 Populus trichocarpa HOM05D004137 ORTHO05D004804 9.1e-10 66.6 75 44.0
Lsat_1_v5_gn_2_50221 Lactuca sativa HOM05D004137 ORTHO05D004804 1.2e-09 66.2 73 43.8
Lsat_1_v5_gn_1_68820 Lactuca sativa HOM05D004137 ORTHO05D004804 2.7e-09 65.1 70 45.7
AL7G26620 Arabidopsis lyrata HOM05D004137 ORTHO05D004804 3.5e-09 64.7 73 38.4
DCAR_023854 Daucus carota HOM05D004137 ORTHO05D004804 3.5e-09 64.7 71 43.7
CARHR233900 Cardamine hirsuta HOM05D004137 ORTHO05D004804 4.5e-09 64.3 73 38.4
Medtr8g088460 Medicago truncatula HOM05D004137 ORTHO05D004804 4.5e-09 64.3 69 50.7
TAR623G1005 Trochodendron aralioides HOM05D004137 ORTHO05D004804 4.5e-09 64.3 71 45.1
Cc01_g00130 Coffea canephora HOM05D004137 ORTHO05D004804 7.7e-09 63.5 68 41.2
CARHR088170 Cardamine hirsuta HOM05D004137 ORTHO05D004804 1.0e-08 63.2 66 50.0
Nn7g35858 Nelumbo nucifera HOM05D004137 ORTHO05D004804 1.0e-08 63.2 73 42.5
BraA05t20644Z Brassica rapa HOM05D004137 ORTHO05D004804 1.3e-08 62.8 49 55.1
HanXRQChr01g0021421 Helianthus annuus HOM05D004137 ORTHO05D004804 1.3e-08 62.8 62 45.2
Nitab4.5_0000528g0100 Nicotiana tabacum HOM05D004137 ORTHO05D004804 1.3e-08 62.8 64 45.3
Nitab4.5_0005935g0010 Nicotiana tabacum HOM05D004137 ORTHO05D004804 1.3e-08 62.8 64 45.3
AT3G13500 Arabidopsis thaliana HOM05D004137 ORTHO05D004804 1.7e-08 62.4 65 49.2
Sp7g24280 Schrenkiella parvula HOM05D004137 ORTHO05D004804 1.7e-08 62.4 73 38.4
AL3G25410 Arabidopsis lyrata HOM05D004137 ORTHO05D004804 2.2e-08 62.0 65 46.2
Carub.0007s1461 Capsella rubella HOM05D004137 ORTHO05D004804 2.2e-08 62.0 73 37.0
PGSC0003DMG400033149 Solanum tuberosum HOM05D004137 ORTHO05D004804 2.2e-08 62.0 74 41.9
PGR102G2770 Punica granatum HOM05D004137 ORTHO05D004804 2.9e-08 61.6 74 39.2
MD03G1003400 Malus domestica HOM05D004137 ORTHO05D004804 3.8e-08 61.2 62 45.2
Nn2g15861 Nelumbo nucifera HOM05D004137 ORTHO05D004804 3.8e-08 61.2 73 43.8
Eucgr.B03601 Eucalyptus grandis HOM05D004137 ORTHO05D004804 5.0e-08 60.8 65 38.5
QL04p040762 Quercus lobata HOM05D004137 ORTHO05D004804 6.5e-08 60.5 60 48.3
Solyc06g064610.1 Solanum lycopersicum HOM05D004137 ORTHO05D004804 6.5e-08 60.5 74 40.5
Sopen06g023090 Solanum pennellii HOM05D004137 ORTHO05D004804 6.5e-08 60.5 74 41.9
Carub.0003s1297 Capsella rubella HOM05D004137 ORTHO05D004804 8.5e-08 60.1 71 47.9
Solyc11g042440.1 Solanum lycopersicum HOM05D004137 ORTHO05D004804 8.5e-08 60.1 64 42.2
Psat7g063840 Pisum sativum HOM05D004137 ORTHO05D004804 1.1e-07 59.7 69 43.5
ECA248G0157 Erigeron canadensis HOM05D004137 ORTHO05D004804 1.9e-07 58.9 62 41.9
Lsat_1_v5_gn_1_59720 Lactuca sativa HOM05D004137 ORTHO05D004804 1.9e-07 58.9 74 40.5
Sopen11g018520 Solanum pennellii HOM05D004137 ORTHO05D004804 1.9e-07 58.9 64 40.6
PGSC0003DMG400037247 Solanum tuberosum HOM05D004137 ORTHO05D004804 1.9e-07 58.9 64 42.2
Lj4g0013694 Lotus japonicus HOM05D004137 ORTHO05D004804 3.2e-07 58.2 68 44.1
THA.LOC104811721 Tarenaya hassleriana HOM05D004137 ORTHO05D004804 3.2e-07 58.2 70 35.7
ATR0737G017 Amborella trichopoda HOM05D004137 ORTHO05D004804 7.2e-07 57.0 74 41.9
Thhalv10027319m.g Eutrema salsugineum HOM05D004137 ORTHO05D004804 9.4e-07 56.6 73 34.2
Sed0012847 Sechium edule HOM05D004137 ORTHO05D004804 1.2e-06 56.2 62 45.2
CAN.G960.46 Capsicum annuum HOM05D004137 ORTHO05D004804 1.6e-06 55.8 69 40.6
C07p54810 Brassica napus HOM05D004137 ORTHO05D004804 3.6e-06 54.7 73 34.2
BolC7t45970H Brassica oleracea HOM05D004137 ORTHO05D004804 3.6e-06 54.7 73 34.2
Solyc10g078570.1 Solanum lycopersicum HOM05D004137 ORTHO05D004804 3.6e-06 54.7 70 38.6
PGSC0003DMG400008382 Solanum tuberosum HOM05D004137 ORTHO05D004804 3.6e-06 54.7 70 38.6
Ah.13g075420 Amaranthus hybridus HOM05D004137 ORTHO05D004804 6.1e-06 53.9 76 44.7
ClCG02G024390 Citrullus lanatus HOM05D004137 ORTHO05D004804 6.1e-06 53.9 84 38.1


User provided reference genes

Program Settings