Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC01g01477 Brassica carinata HOM05D003795 ORTHO05D004308 1.2e-191 673.3 415 100.0
C03p92420 Brassica napus HOM05D003795 ORTHO05D004308 1.2e-191 673.3 415 100.0
BolC3t21550H Brassica oleracea HOM05D003795 ORTHO05D004308 6.5e-166 587.8 416 88.2
A08p00830 Brassica napus HOM05D003795 ORTHO05D004308 2.5e-157 559.3 423 85.1
BraA08t32141Z Brassica rapa HOM05D003795 ORTHO05D004308 1.8e-123 446.8 424 76.7
Sp5g20650 Schrenkiella parvula HOM05D003795 ORTHO05D004308 3.9e-102 375.9 511 61.4
Thhalv10018468m.g Eutrema salsugineum HOM05D003795 ORTHO05D004308 1.9e-93 347.1 512 56.8
BcaB04g16989 Brassica carinata HOM05D003795 ORTHO05D004308 4.3e-85 319.3 489 60.3
CARHR057540 Cardamine hirsuta HOM05D003795 ORTHO05D004308 3.9e-78 296.2 484 48.3
AL2G22840 Arabidopsis lyrata HOM05D003795 ORTHO05D004308 4.2e-72 276.2 494 51.0
AT1G65710 Arabidopsis thaliana HOM05D003795 ORTHO05D004308 4.2e-72 276.2 502 50.4
Carub.0002s1153 Capsella rubella HOM05D003795 ORTHO05D004308 4.8e-60 236.1 530 43.4
THA.LOC104805668 Tarenaya hassleriana HOM05D003795 ORTHO05D004308 7.5e-45 185.7 596 36.9
CARHR216000 Cardamine hirsuta HOM05D003795 ORTHO05D004308 4.8e-44 183.0 570 36.7
AL7G45860 Arabidopsis lyrata HOM05D003795 ORTHO05D004308 1.4e-43 181.4 562 39.5
AT5G37010 Arabidopsis thaliana HOM05D003795 ORTHO05D004308 1.6e-42 177.9 564 39.2
Sp7g05490 Schrenkiella parvula HOM05D003795 ORTHO05D004308 8.5e-41 172.2 590 36.1
HanXRQChr14g0443551 Helianthus annuus HOM05D003795 ORTHO05D004308 9.4e-40 168.7 477 36.1
BcaB06g27061 Brassica carinata HOM05D003795 ORTHO05D004308 2.7e-39 167.2 550 34.2
Thhalv10018248m.g Eutrema salsugineum HOM05D003795 ORTHO05D004308 1.4e-38 164.9 575 37.2
BcaC02g09547 Brassica carinata HOM05D003795 ORTHO05D004308 2.6e-37 160.6 549 37.2
Carub.0007s3228 Capsella rubella HOM05D003795 ORTHO05D004308 9.8e-37 158.7 542 41.5
SalBow5G4136 Salvia bowleyana HOM05D003795 ORTHO05D004308 1.8e-35 154.5 475 38.3
BolC4t25981H Brassica oleracea HOM05D003795 ORTHO05D004308 7.0e-35 152.5 556 36.0
C04p43990 Brassica napus HOM05D003795 ORTHO05D004308 1.2e-34 151.8 557 35.9
VMungo0647G0124 Vigna mungo HOM05D003795 ORTHO05D004308 2.1e-31 141.0 481 32.6
Gohir.A11G170300 Gossypium hirsutum HOM05D003795 ORTHO05D004308 1.8e-30 137.9 500 35.0
Thecc.04G056400 Theobroma cacao HOM05D003795 ORTHO05D004308 1.8e-30 137.9 535 31.8
Duzib138G1939 Durio zibethinus HOM05D003795 ORTHO05D004308 4.0e-30 136.7 512 33.6
Phvul.008G243000 Phaseolus vulgaris HOM05D003795 ORTHO05D004308 4.0e-30 136.7 498 30.7
Aa31LG2G10060 Aethionema arabicum HOM05D003795 ORTHO05D004308 1.5e-29 134.8 597 35.5
Psat2g048640 Pisum sativum HOM05D003795 ORTHO05D004308 2.0e-29 134.4 474 32.9
Potri.012G145200 Populus trichocarpa HOM05D003795 ORTHO05D004308 5.7e-29 132.9 572 30.4
Sabra12G0109200 Salix brachista HOM05D003795 ORTHO05D004308 1.7e-28 131.3 563 30.7
Gohir.D11G177300 Gossypium hirsutum HOM05D003795 ORTHO05D004308 1.1e-27 128.6 481 34.5
Peaxi162Scf00344g00199 Petunia axillaris HOM05D003795 ORTHO05D004308 1.4e-27 128.3 524 34.0
Gorai.007G189400 Gossypium raimondii HOM05D003795 ORTHO05D004308 2.4e-27 127.5 483 34.2
Lalb_Chr18g0053951 Lupinus albus HOM05D003795 ORTHO05D004308 2.4e-27 127.5 502 30.5
SGA_v2.0_scaffold199G41250 Striga asiatica HOM05D003795 ORTHO05D004308 2.4e-27 127.5 542 35.4
Nitab4.5_0000483g0170 Nicotiana tabacum HOM05D003795 ORTHO05D004308 3.1e-27 127.1 602 31.4
CsaV3_5G024360 Cucumis sativus L. HOM05D003795 ORTHO05D004308 4.1e-27 126.7 504 31.9
Nitab4.5_0012787g0030 Nicotiana tabacum HOM05D003795 ORTHO05D004308 4.1e-27 126.7 522 33.7
CSS0049356 Camellia sinensis var. sinensis HOM05D003795 ORTHO05D004308 9.2e-27 125.6 627 31.6
Lj2A509T28 Lonicera japonica HOM05D003795 ORTHO05D004308 1.6e-26 124.8 627 33.0
A04p10490 Brassica napus HOM05D003795 ORTHO05D004308 4.5e-26 123.2 546 36.4
PGSC0003DMG400019727 Solanum tuberosum HOM05D003795 ORTHO05D004308 5.9e-26 122.9 509 32.0
Manes.02G083300 Manihot esculenta HOM05D003795 ORTHO05D004308 2.3e-25 120.9 560 30.4
unitig_748.g8624 Utricularia gibba HOM05D003795 ORTHO05D004308 2.3e-25 120.9 409 33.7
Lsat_1_v5_gn_2_72041 Lactuca sativa HOM05D003795 ORTHO05D004308 3.8e-25 120.2 472 36.7
PSO063G2224 Papaver somniferum HOM05D003795 ORTHO05D004308 6.6e-25 119.4 524 33.2
ECA238G3337 Erigeron canadensis HOM05D003795 ORTHO05D004308 8.6e-25 119.0 443 36.1
CAN.G809.93 Capsicum annuum HOM05D003795 ORTHO05D004308 1.1e-24 118.6 530 34.0
Sopen02g026080 Solanum pennellii HOM05D003795 ORTHO05D004308 1.1e-24 118.6 503 34.2
Medtr5g076140 Medicago truncatula HOM05D003795 ORTHO05D004308 1.9e-24 117.9 506 34.2
Solyc02g081440.4 Solanum lycopersicum HOM05D003795 ORTHO05D004308 2.5e-24 117.5 504 34.3
TWI74G0163 Tripterygium wilfordii HOM05D003795 ORTHO05D004308 2.5e-24 117.5 542 33.0
ClCG01G008410 Citrullus lanatus HOM05D003795 ORTHO05D004308 3.3e-24 117.1 534 31.5
Manes.01G125700 Manihot esculenta HOM05D003795 ORTHO05D004308 4.3e-24 116.7 632 30.5
Sed0021341 Sechium edule HOM05D003795 ORTHO05D004308 4.3e-24 116.7 656 28.0
MELO3C025107.2 Cucumis melo HOM05D003795 ORTHO05D004308 5.6e-24 116.3 503 28.4
TPR.G15394 Trifolium pratense HOM05D003795 ORTHO05D004308 1.2e-23 115.2 475 34.3
unitig_0.g1678 Utricularia gibba HOM05D003795 ORTHO05D004308 2.1e-23 114.4 392 32.1
Oeu012502.2 Olea europaea HOM05D003795 ORTHO05D004308 2.8e-23 114.0 518 30.1
arahy.Tifrunner.gnm1.ann1.SLU9BZ Arachis hypogaea HOM05D003795 ORTHO05D004308 4.7e-23 113.2 544 31.6
DCAR_014135 Daucus carota HOM05D003795 ORTHO05D004308 6.1e-23 112.8 560 32.7
Cpa.g.sc108.20 Carica papaya HOM05D003795 ORTHO05D004308 8.0e-23 112.5 505 33.5
Sabra15G0156700 Salix brachista HOM05D003795 ORTHO05D004308 8.0e-23 112.5 550 30.4
TWI77G0024 Tripterygium wilfordii HOM05D003795 ORTHO05D004308 8.0e-23 112.5 544 31.4
Aa31LG9G17690 Aethionema arabicum HOM05D003795 ORTHO05D004308 1.4e-22 111.7 605 33.9
arahy.Tifrunner.gnm1.ann1.686QXT Arachis hypogaea HOM05D003795 ORTHO05D004308 1.8e-22 111.3 551 30.9
Dinv28269 Davidia involucrata HOM05D003795 ORTHO05D004308 1.8e-22 111.3 555 31.9
FAN18G0662 Fragaria x ananassa HOM05D003795 ORTHO05D004308 1.8e-22 111.3 488 30.3
FAN18G1276 Fragaria x ananassa HOM05D003795 ORTHO05D004308 1.8e-22 111.3 488 30.3
Ca_05735_v3 Cicer arietinum L. HOM05D003795 ORTHO05D004308 2.3e-22 110.9 485 32.6
FvH4_5g39710 Fragaria vesca HOM05D003795 ORTHO05D004308 2.3e-22 110.9 488 29.9
FAN08G2134 Fragaria x ananassa HOM05D003795 ORTHO05D004308 3.0e-22 110.5 488 29.1
PSO782G2347 Papaver somniferum HOM05D003795 ORTHO05D004308 4.0e-22 110.2 540 33.5
QL02p055515 Quercus lobata HOM05D003795 ORTHO05D004308 5.2e-22 109.8 566 31.4
QL02p056567 Quercus lobata HOM05D003795 ORTHO05D004308 5.2e-22 109.8 566 31.1
RcHm_v2.0_Chr7g0242011 Rosa chinensis HOM05D003795 ORTHO05D004308 5.2e-22 109.8 508 32.1
BcaB07g34060 Brassica carinata HOM05D003795 ORTHO05D004308 6.8e-22 109.4 151 47.7
Os04g0528600 Oryza sativa ssp. japonica HOM05D003795 ORTHO05D004308 8.9e-22 109.0 466 29.4
Migut.K01203 Erythranthe guttata HOM05D003795 ORTHO05D004308 1.5e-21 108.2 546 31.7
FAN04G0804 Fragaria x ananassa HOM05D003795 ORTHO05D004308 2.0e-21 107.8 485 30.1
Cc07_g12620 Coffea canephora HOM05D003795 ORTHO05D004308 5.7e-21 106.3 142 50.0
HanXRQChr12g0365641 Helianthus annuus HOM05D003795 ORTHO05D004308 5.7e-21 106.3 399 31.8
Rhsim10G0186600 Rhododendron simsii HOM05D003795 ORTHO05D004308 5.7e-21 106.3 483 33.1
vmacro20445 Vaccinium macrocarpon HOM05D003795 ORTHO05D004308 1.3e-20 105.1 514 33.9
GSVIVG01033197001 Vitis vinifera HOM05D003795 ORTHO05D004308 1.3e-20 105.1 461 30.4
Zm00001eb427110 Zea mays HOM05D003795 ORTHO05D004308 1.3e-20 105.1 445 28.5
Phvul.006G083400 Phaseolus vulgaris HOM05D003795 ORTHO05D004308 2.2e-20 104.4 530 32.5
unitig_748.g7017 Utricularia gibba HOM05D003795 ORTHO05D004308 4.9e-20 103.2 454 32.2
Ca_15099_v3 Cicer arietinum L. HOM05D003795 ORTHO05D004308 1.4e-19 101.7 474 32.9
Haze_14040 Corylus avellana HOM05D003795 ORTHO05D004308 1.4e-19 101.7 567 30.9
Atru.chr1.2190 Acer truncatum HOM05D003795 ORTHO05D004308 1.8e-19 101.3 506 31.2
Glyma.14G207900 Glycine max HOM05D003795 ORTHO05D004308 1.8e-19 101.3 638 27.9
HPP92_013140 Vanilla planifolia HOM05D003795 ORTHO05D004308 1.8e-19 101.3 524 28.6
Zm00001eb075920 Zea mays HOM05D003795 ORTHO05D004308 1.8e-19 101.3 487 29.0
VMungo0540G0009 Vigna mungo HOM05D003795 ORTHO05D004308 4.1e-19 100.1 530 33.4
CANSAT78G1023 Cannabis sativa HOM05D003795 ORTHO05D004308 5.4e-19 99.8 467 34.3
Psat5g144840 Pisum sativum HOM05D003795 ORTHO05D004308 9.2e-19 99.0 502 31.1
Potri.015G147900 Populus trichocarpa HOM05D003795 ORTHO05D004308 9.2e-19 99.0 558 29.2
MSTRG.15619 Avicennia marina HOM05D003795 ORTHO05D004308 1.6e-18 98.2 586 30.9
Oeu060824.1 Olea europaea HOM05D003795 ORTHO05D004308 2.7e-18 97.4 560 28.6
COL.COLO4_13440 Corchorus olitorius HOM05D003795 ORTHO05D004308 1.3e-17 95.1 485 29.5
Ah.04g162800 Amaranthus hybridus HOM05D003795 ORTHO05D004308 1.7e-17 94.7 542 29.0
LjContig00141g0025814 Lotus japonicus HOM05D003795 ORTHO05D004308 3.9e-17 93.6 549 31.3
MSTRG.3665 Avicennia marina HOM05D003795 ORTHO05D004308 8.6e-17 92.4 496 33.1
Glyma.11G202800 Glycine max HOM05D003795 ORTHO05D004308 8.6e-17 92.4 519 30.1
Ah.06g191370 Amaranthus hybridus HOM05D003795 ORTHO05D004308 1.1e-16 92.0 517 31.1
AL6G17260 Arabidopsis lyrata HOM05D003795 ORTHO05D004308 1.1e-16 92.0 167 43.1
Nn4g24995 Nelumbo nucifera HOM05D003795 ORTHO05D004308 1.9e-16 91.3 551 28.3
Glyma.02G239000 Glycine max HOM05D003795 ORTHO05D004308 2.5e-16 90.9 505 27.9
Medtr3g063210 Medicago truncatula HOM05D003795 ORTHO05D004308 2.5e-16 90.9 509 29.1
Hund22224 Selenicereus undatus HOM05D003795 ORTHO05D004308 7.3e-16 89.4 535 32.3
TAR629G1700 Trochodendron aralioides HOM05D003795 ORTHO05D004308 7.3e-16 89.4 418 33.5
Aqoxy3G04352 Aquilegia oxysepala HOM05D003795 ORTHO05D004308 9.5e-16 89.0 479 31.7
MBI06_g17214_MAGBIO Magnolia biondii HOM05D003795 ORTHO05D004308 2.1e-15 87.8 523 29.1
PGSC0003DMG402019715 Solanum tuberosum HOM05D003795 ORTHO05D004308 2.1e-15 87.8 174 39.7
Hma1.2p1_0085F.1_g043870 Hydrangea macrophylla HOM05D003795 ORTHO05D004308 2.8e-15 87.4 161 41.0
Lsat_1_v5_gn_8_114961 Lactuca sativa HOM05D003795 ORTHO05D004308 3.6e-15 87.0 339 35.4
Nitab4.5_0008083g0010 Nicotiana tabacum HOM05D003795 ORTHO05D004308 3.6e-15 87.0 447 30.9
TPR.G37433 Trifolium pratense HOM05D003795 ORTHO05D004308 3.6e-15 87.0 529 28.7
Zm00001eb185660 Zea mays HOM05D003795 ORTHO05D004308 8.0e-15 85.9 413 29.3
CAN.G304.8 Capsicum annuum HOM05D003795 ORTHO05D004308 1.4e-14 85.1 455 27.7
Lj6g0018352 Lotus japonicus HOM05D003795 ORTHO05D004308 1.8e-14 84.7 511 29.4
EL10Ac4g08850 Beta vulgaris HOM05D003795 ORTHO05D004308 3.1e-14 84.0 169 38.5
PGR042G3398 Punica granatum HOM05D003795 ORTHO05D004308 6.8e-14 82.8 565 25.5
Peaxi162Scf00784g00029 Petunia axillaris HOM05D003795 ORTHO05D004308 2.0e-13 81.3 421 31.8
Glyma.18G048000 Glycine max HOM05D003795 ORTHO05D004308 9.8e-13 79.0 538 29.6
Sabra16G0322500 Salix brachista HOM05D003795 ORTHO05D004308 1.3e-12 78.6 94 52.1
CiPaw.03G010000 Carya illinoinensis HOM05D003795 ORTHO05D004308 2.2e-12 77.8 562 28.3
Nitab4.5_0002297g0070 Nicotiana tabacum HOM05D003795 ORTHO05D004308 2.2e-12 77.8 476 28.6
Oeu041416.1 Olea europaea HOM05D003795 ORTHO05D004308 4.9e-12 76.6 492 29.1
Hma1.2p1_0034F.1_g021500 Hydrangea macrophylla HOM05D003795 ORTHO05D004308 1.4e-11 75.1 673 27.5
CDE08G0767 Ceratophyllum demersum HOM05D003795 ORTHO05D004308 7.0e-11 72.8 148 35.1
Aqoxy2G03712 Aquilegia oxysepala HOM05D003795 ORTHO05D004308 1.6e-10 71.6 180 34.4
HanXRQChr09g0258951 Helianthus annuus HOM05D003795 ORTHO05D004308 2.7e-10 70.9 188 33.0
VMungo1383G0923 Vigna mungo HOM05D003795 ORTHO05D004308 7.8e-10 69.3 102 47.1
Ciclev10011149m.g Citrus clementina HOM05D003795 ORTHO05D004308 1.3e-09 68.6 586 27.5
BcaB05g23170 Brassica carinata HOM05D003795 ORTHO05D004308 1.1e-08 65.5 45 80.0
Nn4g24993 Nelumbo nucifera HOM05D003795 ORTHO05D004308 1.5e-08 65.1 557 28.0
Eucgr.J01649 Eucalyptus grandis HOM05D003795 ORTHO05D004308 1.9e-08 64.7 282 29.8
Sc20g0000860 Simmondsia chinensis HOM05D003795 ORTHO05D004308 2.5e-08 64.3 589 25.1
VMungo1215G2457 Vigna mungo HOM05D003795 ORTHO05D004308 5.6e-08 63.2 198 33.8
Lalb_Chr10g0103891 Lupinus albus HOM05D003795 ORTHO05D004308 7.3e-08 62.8 101 47.5
Actinidia32996 Actinidia chinensis HOM05D003795 ORTHO05D004308 9.5e-08 62.4 377 32.9
Prupe.7G058700 Prunus persica HOM05D003795 ORTHO05D004308 2.8e-07 60.8 78 48.7
CDE07G0419 Ceratophyllum demersum HOM05D003795 ORTHO05D004308 3.6e-07 60.5 471 27.4
BraA05t20886Z Brassica rapa HOM05D003089 ORTHO05D001766 6.2e-07 59.7 215 38.6
ECA232G0457 Erigeron canadensis HOM05D003795 ORTHO05D004308 6.2e-07 59.7 341 28.4
Dinv19094 Davidia involucrata HOM05D003795 ORTHO05D004308 1.4e-06 58.5 193 32.6
AUR62010626 Chenopodium quinoa HOM05D003795 ORTHO05D004308 3.1e-06 57.4 90 44.4
Os02g0638200 Oryza sativa ssp. japonica HOM05D003795 ORTHO05D004308 6.8e-06 56.2 125 33.6


User provided reference genes

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