Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C03p92090 Brassica napus HOM05D000160 ORTHO05D042615 1.4e-56 222.6 104 100.0
BolC3t21526H Brassica oleracea HOM05D000160 ORTHO05D042615 2.6e-55 218.4 104 98.1
BcaC04g18648 Brassica carinata HOM05D000160 ORTHO05D000914 1.9e-26 122.5 102 62.7
C09p57710 Brassica napus HOM05D000160 ORTHO05D000914 1.9e-26 122.5 102 62.7
BolC9t58642H Brassica oleracea HOM05D000160 ORTHO05D000914 1.9e-26 122.5 102 62.7
BcaB08g36646 Brassica carinata HOM05D000160 ORTHO05D000914 4.3e-26 121.3 88 68.2
A10p20830 Brassica napus HOM05D000160 ORTHO05D000914 7.4e-26 120.6 102 61.8
BraA10t44148Z Brassica rapa HOM05D000160 ORTHO05D000914 7.4e-26 120.6 102 61.8
Sp6g25630 Schrenkiella parvula HOM05D000160 ORTHO05D000914 7.4e-26 120.6 99 58.6
Thhalv10012639m.g Eutrema salsugineum HOM05D000160 ORTHO05D000914 8.2e-25 117.1 100 60.0
AL6G30080 Arabidopsis lyrata HOM05D000160 ORTHO05D000914 7.6e-23 110.5 100 54.0
AT5G18750 Arabidopsis thaliana HOM05D000160 ORTHO05D000914 1.0e-22 110.2 101 54.5
Carub.0006s1707 Capsella rubella HOM05D000160 ORTHO05D000914 8.4e-22 107.1 100 52.0
CARHR194240 Cardamine hirsuta HOM05D000160 ORTHO05D000914 2.5e-18 95.5 100 47.0
Aa31LG11G10910 Aethionema arabicum HOM05D000160 ORTHO05D000914 4.1e-16 88.2 87 48.3
THA.LOC104818838 Tarenaya hassleriana HOM05D000160 ORTHO05D000914 2.6e-15 85.5 88 46.6
THA.LOC104802729 Tarenaya hassleriana HOM05D000160 ORTHO05D000914 2.9e-14 82.0 88 44.3
AUR62044657 Chenopodium quinoa HOM05D000160 ORTHO05D000914 5.0e-14 81.3 88 38.6
MELO3C021368.2 Cucumis melo HOM05D000160 ORTHO05D000914 1.4e-13 79.7 87 37.9
Lj6C667T12 Lonicera japonica HOM05D000160 ORTHO05D000914 1.4e-13 79.7 92 40.2
AUR62024078 Chenopodium quinoa HOM05D000160 ORTHO05D000914 1.9e-13 79.3 88 38.6
Actinidia23439 Actinidia chinensis HOM05D000160 ORTHO05D000914 7.2e-13 77.4 101 34.7
Sed0018299 Sechium edule HOM05D000160 ORTHO05D000914 7.2e-13 77.4 88 36.4
THA.LOC104827121 Tarenaya hassleriana HOM05D000160 ORTHO05D000914 9.4e-13 77.0 92 46.7
Haze_01043 Corylus avellana HOM05D000160 ORTHO05D000914 1.2e-12 76.6 103 34.0
SHI00286 Sapria himalayana HOM05D000160 ORTHO05D000914 1.6e-12 76.3 94 35.1
EL10Ac3g06556 Beta vulgaris HOM05D000160 ORTHO05D000914 2.1e-12 75.9 88 35.2
Cfa015508 Carpinus fangiana HOM05D000160 ORTHO05D000914 2.1e-12 75.9 103 34.0
Sopen01g029730 Solanum pennellii HOM05D000160 ORTHO05D000914 2.1e-12 75.9 86 38.4
Ciclev10004243m.g Citrus clementina HOM05D000160 ORTHO05D000914 2.7e-12 75.5 104 33.7
CsaV3_6G005670 Cucumis sativus L. HOM05D000160 ORTHO05D000914 3.6e-12 75.1 87 34.5
Atru.chr4.2740 Acer truncatum HOM05D000160 ORTHO05D000914 4.6e-12 74.7 88 38.6
Nitab4.5_0000303g0010 Nicotiana tabacum HOM05D000160 ORTHO05D000914 4.6e-12 74.7 87 37.9
Nitab4.5_0001624g0010 Nicotiana tabacum HOM05D000160 ORTHO05D000914 4.6e-12 74.7 87 40.2
Solyc01g067780.1 Solanum lycopersicum HOM05D000160 ORTHO05D000914 4.6e-12 74.7 86 37.2
Dinv38334 Davidia involucrata HOM05D000160 ORTHO05D009988 6.1e-12 74.3 103 31.1
Nitab4.5_0006501g0040 Nicotiana tabacum HOM05D000160 ORTHO05D000914 1.0e-11 73.6 87 37.9
RcHm_v2.0_Chr4g0420721 Rosa chinensis HOM05D000160 ORTHO05D000914 1.4e-11 73.2 86 34.9
PGSC0003DMG400022844 Solanum tuberosum HOM05D000160 ORTHO05D000914 1.8e-11 72.8 86 33.7
CSS0015092 Camellia sinensis var. sinensis HOM05D000160 ORTHO05D000914 2.3e-11 72.4 92 33.7
CiPaw.01G154700 Carya illinoinensis HOM05D000160 ORTHO05D000914 2.3e-11 72.4 103 33.0
Actinidia40219 Actinidia chinensis HOM05D000160 ORTHO05D000914 3.0e-11 72.0 102 33.3
QL06p006981 Quercus lobata HOM05D000160 ORTHO05D000914 8.8e-11 70.5 103 33.0
PGSC0003DMG400031282 Solanum tuberosum HOM05D000160 ORTHO05D000914 8.8e-11 70.5 92 33.7
Sabra10G0010200 Salix brachista HOM05D000160 ORTHO05D000914 1.1e-10 70.1 92 34.8
vmacro15270 Vaccinium macrocarpon HOM05D000160 ORTHO05D000914 1.1e-10 70.1 103 32.0
CSS0005936 Camellia sinensis var. sinensis HOM05D000160 ORTHO05D000914 1.5e-10 69.7 103 29.1
Manes.03G190300 Manihot esculenta HOM05D000160 ORTHO05D000914 2.5e-10 68.9 102 32.4
CAN.G185.1 Capsicum annuum HOM05D000160 ORTHO05D000914 3.3e-10 68.6 86 32.6
Potri.010G018800 Populus trichocarpa HOM05D000160 ORTHO05D000914 3.3e-10 68.6 92 33.7
Rhsim04G0215400 Rhododendron simsii HOM05D000160 ORTHO05D000914 3.3e-10 68.6 103 32.0
Hund20632 Selenicereus undatus HOM05D000160 ORTHO05D000914 3.3e-10 68.6 88 34.1
Thecc.04G275600 Theobroma cacao HOM05D000160 ORTHO05D000914 3.3e-10 68.6 89 36.0
Hund20631 Selenicereus undatus HOM05D000160 ORTHO05D000914 5.7e-10 67.8 88 35.2
Sc25g0004670 Simmondsia chinensis HOM05D000160 ORTHO05D000914 5.7e-10 67.8 88 36.4
Eucgr.H03712 Eucalyptus grandis HOM05D000160 ORTHO05D000914 7.4e-10 67.4 95 32.6
CANSAT78G0852 Cannabis sativa HOM05D000160 ORTHO05D000914 9.7e-10 67.0 90 36.7
CDE10G0496 Ceratophyllum demersum HOM05D000160 ORTHO05D000914 9.7e-10 67.0 88 36.4
FvH4_2g06370 Fragaria vesca HOM05D000160 ORTHO05D000914 9.7e-10 67.0 86 31.4
FAN24G0185 Fragaria x ananassa HOM05D000160 ORTHO05D000914 9.7e-10 67.0 86 31.4
MD13G1174800 Malus domestica HOM05D000160 ORTHO05D000914 9.7e-10 67.0 87 32.2
DCAR_027117 Daucus carota HOM05D000160 ORTHO05D000914 1.3e-09 66.6 104 32.7
Prupe.1G143400 Prunus persica HOM05D000160 ORTHO05D000914 1.3e-09 66.6 87 32.2
Nitab4.5_0001149g0020 Nicotiana tabacum HOM05D000160 ORTHO05D000914 1.7e-09 66.2 87 34.5
Peaxi162Scf01067g00026 Petunia axillaris HOM05D000160 ORTHO05D000914 1.7e-09 66.2 87 32.2
CDE10G0835 Ceratophyllum demersum HOM05D000160 ORTHO05D000914 2.2e-09 65.9 88 36.4
FAN15G2454 Fragaria x ananassa HOM05D000160 ORTHO05D000914 2.2e-09 65.9 86 30.2
FAN20G1760 Fragaria x ananassa HOM05D000160 ORTHO05D000914 2.2e-09 65.9 86 30.2
Rhsim02G0014200 Rhododendron simsii HOM05D001702 ORTHO05D001791 2.2e-09 65.9 103 30.1
TAR633G1578 Trochodendron aralioides HOM05D000160 ORTHO05D000914 2.2e-09 65.9 87 34.5
Sed0011495 Sechium edule HOM05D000160 ORTHO05D000914 2.8e-09 65.5 88 34.1
FAN27G0892 Fragaria x ananassa HOM05D000160 ORTHO05D000914 3.7e-09 65.1 86 30.2
Gohir.A10G101935 Gossypium hirsutum HOM05D000160 ORTHO05D000914 3.7e-09 65.1 88 38.6
Gohir.D10G165700 Gossypium hirsutum HOM05D000160 ORTHO05D000914 3.7e-09 65.1 88 38.6
Cc03_g02490 Coffea canephora HOM05D000160 ORTHO05D000914 4.8e-09 64.7 92 33.7
Lj9C675G3 Lonicera japonica HOM05D000160 ORTHO05D000914 4.8e-09 64.7 85 38.8
A03p09060 Brassica napus HOM05D000160 ORTHO05D000914 6.3e-09 64.3 88 39.8
BraA03t10230Z Brassica rapa HOM05D000160 ORTHO05D000914 6.3e-09 64.3 88 39.8
DCAR_027116 Daucus carota HOM05D000160 ORTHO05D000914 6.3e-09 64.3 105 31.4
Gorai.011G184900 Gossypium raimondii HOM05D000160 ORTHO05D000914 6.3e-09 64.3 88 38.6
Lj4g0025911 Lotus japonicus HOM05D000160 ORTHO05D000914 6.3e-09 64.3 91 35.2
Sc19g0004870 Simmondsia chinensis HOM05D000160 ORTHO05D000914 6.3e-09 64.3 89 34.8
TPR.G14961 Trifolium pratense HOM05D000160 ORTHO05D000914 6.3e-09 64.3 104 31.7
CARHR194290 Cardamine hirsuta HOM05D000160 ORTHO05D000914 8.2e-09 63.9 87 36.8
Hma1.2p1_0078F.1_g040875 Hydrangea macrophylla HOM05D000160 ORTHO05D000914 8.2e-09 63.9 92 32.6
Hma1.2p1_1671F.1_g296750 Hydrangea macrophylla HOM05D000160 ORTHO05D000914 8.2e-09 63.9 92 32.6
MD16G1176500 Malus domestica HOM05D000160 ORTHO05D000914 1.1e-08 63.5 87 31.0
Dinv03766 Davidia involucrata HOM05D000160 ORTHO05D000914 1.8e-08 62.8 85 32.9
Lj9C676G6 Lonicera japonica HOM05D000160 ORTHO05D000914 1.8e-08 62.8 79 36.7
Duzib151G0184 Durio zibethinus HOM05D000160 ORTHO05D000914 2.4e-08 62.4 88 33.0
Gohir.A02G045600 Gossypium hirsutum HOM05D000160 ORTHO05D000914 4.1e-08 61.6 88 33.0
Gohir.D02G051600 Gossypium hirsutum HOM05D000160 ORTHO05D000914 4.1e-08 61.6 88 33.0
Gorai.005G056900 Gossypium raimondii HOM05D000160 ORTHO05D000914 4.1e-08 61.6 88 33.0
SEGI_01932 Sequoiadendron giganteum HOM05D000160 ORTHO05D000914 5.3e-08 61.2 91 38.5
TWI73G0317 Tripterygium wilfordii HOM05D000160 ORTHO05D000914 6.9e-08 60.8 103 29.1
Prupe.6G333800 Prunus persica HOM05D000160 ORTHO05D000914 1.2e-07 60.1 85 34.1
Duzib052G0920 Durio zibethinus HOM05D000160 ORTHO05D000914 1.5e-07 59.7 88 31.8
Psat1g186840 Pisum sativum HOM05D000160 ORTHO05D000914 1.5e-07 59.7 94 34.0
Zm00001eb334280 Zea mays HOM05D000160 ORTHO05D000914 2.0e-07 59.3 71 38.0
AL6G29990 Arabidopsis lyrata HOM05D000160 ORTHO05D000914 2.6e-07 58.9 90 37.8
Duzib151G0392 Durio zibethinus HOM05D000160 ORTHO05D000914 2.6e-07 58.9 88 34.1
Os06g0535300 Oryza sativa ssp. japonica HOM05D000160 ORTHO05D000914 2.6e-07 58.9 87 32.2
BolC3t13536H Brassica oleracea HOM05D000160 ORTHO05D000914 3.4e-07 58.5 88 37.5
Nn4g26061 Nelumbo nucifera HOM05D000160 ORTHO05D000914 3.4e-07 58.5 101 25.7
PSO339G3731 Papaver somniferum HOM05D000160 ORTHO05D000914 3.4e-07 58.5 103 29.1
Psat4g029760 Pisum sativum HOM05D000160 ORTHO05D000914 3.4e-07 58.5 104 29.8
GSVIVG01021980001 Vitis vinifera HOM05D000160 ORTHO05D000914 3.4e-07 58.5 85 29.4
BcaB08g36649 Brassica carinata HOM05D000160 ORTHO05D000914 4.5e-07 58.2 77 39.0
Carub.0006s1701 Capsella rubella HOM05D000160 ORTHO05D000914 4.5e-07 58.2 92 38.0
A10p20850 Brassica napus HOM05D000160 ORTHO05D000914 5.9e-07 57.8 76 38.2
C03p10550 Brassica napus HOM05D000160 ORTHO05D000914 5.9e-07 57.8 88 36.4
TPR.G30681 Trifolium pratense HOM05D000160 ORTHO05D000914 5.9e-07 57.8 100 31.0
arahy.Tifrunner.gnm1.ann1.10ECP5 Arachis hypogaea HOM05D000160 ORTHO05D000914 7.7e-07 57.4 101 29.7
arahy.Tifrunner.gnm1.ann1.E4I4JS Arachis hypogaea HOM05D000160 ORTHO05D000914 7.7e-07 57.4 101 29.7
Glyma.17G022200 Glycine max HOM05D000160 ORTHO05D000914 7.7e-07 57.4 103 27.2
PSO170G2599 Papaver somniferum HOM05D000160 ORTHO05D000914 7.7e-07 57.4 107 30.8
PSO302G0260 Papaver somniferum HOM05D000160 ORTHO05D000914 7.7e-07 57.4 93 33.3
COL.COLO4_13944 Corchorus olitorius HOM05D000160 ORTHO05D000914 1.0e-06 57.0 89 32.6
Phvul.003G100000 Phaseolus vulgaris HOM05D000160 ORTHO05D000914 1.0e-06 57.0 105 28.6
arahy.Tifrunner.gnm1.ann1.ID495C Arachis hypogaea HOM05D000160 ORTHO05D000914 1.3e-06 56.6 98 36.7
arahy.Tifrunner.gnm1.ann1.TJR5LV Arachis hypogaea HOM05D000160 ORTHO05D000914 1.3e-06 56.6 98 36.7
BraA10t44150Z Brassica rapa HOM05D000160 ORTHO05D000914 1.3e-06 56.6 77 39.0
Thhalv10015238m.g Eutrema salsugineum HOM05D000160 ORTHO05D000914 1.3e-06 56.6 77 37.7
TAR362G0366 Trochodendron aralioides HOM05D000160 ORTHO05D000914 1.3e-06 56.6 104 29.8
Ca_21555_v3 Cicer arietinum L. HOM05D000160 ORTHO05D000914 1.7e-06 56.2 90 34.4
Duzib212G0642 Durio zibethinus HOM05D000160 ORTHO05D000914 1.7e-06 56.2 88 31.8
Lalb_Chr13g0303931 Lupinus albus HOM05D000160 ORTHO05D000914 1.7e-06 56.2 106 32.1
MBI19_g32769_MAGBIO Magnolia biondii HOM05D000160 ORTHO05D000914 1.7e-06 56.2 92 29.3
Ca_00582_v3 Cicer arietinum L. HOM05D000160 ORTHO05D000914 2.2e-06 55.8 93 32.3
Cc09_g07960 Coffea canephora HOM05D000160 ORTHO05D010424 2.2e-06 55.8 95 31.6
Glyma.07G252300 Glycine max HOM05D000160 ORTHO05D000914 2.2e-06 55.8 103 27.2
Medtr4g118660 Medicago truncatula HOM05D000160 ORTHO05D000914 2.2e-06 55.8 101 30.7
Rhsim07G0177100 Rhododendron simsii HOM05D001702 ORTHO05D000914 2.2e-06 55.8 63 38.1
BcaB08g36650 Brassica carinata HOM05D000160 ORTHO05D000914 2.9e-06 55.5 77 37.7
ECA240G3170 Erigeron canadensis HOM05D000160 ORTHO05D000496 2.9e-06 55.5 76 39.5
PSO170G0392 Papaver somniferum HOM05D000160 ORTHO05D000914 2.9e-06 55.5 88 29.5
Actinidia05743 Actinidia chinensis HOM05D000160 ORTHO05D000914 3.8e-06 55.1 84 31.0
arahy.Tifrunner.gnm1.ann1.VU3H9N Arachis hypogaea HOM05D000160 ORTHO05D000914 3.8e-06 55.1 98 31.6
Zm00001eb131880 Zea mays HOM05D000160 ORTHO05D000914 3.8e-06 55.1 90 34.4
PSO339G0385 Papaver somniferum HOM05D000160 ORTHO05D000914 5.0e-06 54.7 93 31.2
Peaxi162Scf00225g00625 Petunia axillaris HOM05D000160 ORTHO05D000914 5.0e-06 54.7 98 31.6
VMungo1215G2528 Vigna mungo HOM05D000160 ORTHO05D000914 5.0e-06 54.7 103 27.2
Os11g0578100 Oryza sativa ssp. japonica HOM05D000160 ORTHO05D000914 6.5e-06 54.3 90 35.6
Cfa006510 Carpinus fangiana HOM05D000160 ORTHO05D000914 8.5e-06 53.9 89 25.8
Os01g0375100 Oryza sativa ssp. japonica HOM05D000160 ORTHO05D000914 8.5e-06 53.9 87 34.5
vmacro05056 Vaccinium macrocarpon HOM05D000160 ORTHO05D000914 8.5e-06 53.9 84 31.0


User provided reference genes

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