Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C03p90280 Brassica napus HOM05D005017 ORTHO05D006044 7.5e-125 450.7 249 100.0
A08p02530 Brassica napus HOM05D005017 ORTHO05D006044 5.3e-123 444.5 249 98.8
BolC3t21350H Brassica oleracea HOM05D005017 ORTHO05D006044 1.2e-119 433.3 249 98.4
BraA08t32293Z Brassica rapa HOM05D005017 ORTHO05D006044 3.6e-119 431.8 240 99.2
BcaC01g01293 Brassica carinata HOM05D005017 ORTHO05D006044 4.4e-117 424.9 263 91.6
Sp1g38370 Schrenkiella parvula HOM05D005017 ORTHO05D006044 9.8e-117 423.7 248 94.4
Thhalv10011475m.g Eutrema salsugineum HOM05D005017 ORTHO05D006044 1.4e-115 419.9 248 93.5
BolC6t36489H Brassica oleracea HOM05D005017 ORTHO05D006044 1.3e-113 413.3 240 95.0
A05p19400 Brassica napus HOM05D005017 ORTHO05D006044 2.9e-113 412.1 240 95.8
BraA05t20844Z Brassica rapa HOM05D005017 ORTHO05D006044 2.8e-111 405.6 247 93.1
AL1G59670 Arabidopsis lyrata HOM05D005017 ORTHO05D006044 6.8e-110 401.0 248 88.7
BcaC08g43934 Brassica carinata HOM05D005017 ORTHO05D006044 8.8e-110 400.6 249 91.6
AT1G51730 Arabidopsis thaliana HOM05D005017 ORTHO05D006044 1.2e-109 400.2 248 87.9
C06p13290 Brassica napus HOM05D005017 ORTHO05D006044 2.0e-109 399.4 247 91.9
CARHR041890 Cardamine hirsuta HOM05D005017 ORTHO05D006044 1.8e-107 392.9 239 92.1
Aa31LG10G3080 Aethionema arabicum HOM05D005017 ORTHO05D006044 5.4e-107 391.3 246 87.4
Carub.0001s4060 Capsella rubella HOM05D005017 ORTHO05D006044 7.0e-107 391.0 236 90.7
THA.LOC104817935 Tarenaya hassleriana HOM05D005017 ORTHO05D006044 3.0e-97 359.0 246 80.5
SGA_v2.0_scaffold71G23756 Striga asiatica HOM05D005017 ORTHO05D006044 1.2e-90 337.0 249 73.9
Potri.001G199500 Populus trichocarpa HOM05D005017 ORTHO05D006044 2.0e-90 336.3 249 73.5
Ciclev10026315m.g Citrus clementina HOM05D005017 ORTHO05D006044 1.3e-89 333.6 250 74.4
Thecc.06G107700 Theobroma cacao HOM05D005017 ORTHO05D006044 1.3e-89 333.6 247 75.3
Gorai.003G060200 Gossypium raimondii HOM05D005017 ORTHO05D006044 5.0e-89 331.6 246 75.6
Duzib235G0510 Durio zibethinus HOM05D005017 ORTHO05D006044 1.1e-88 330.5 249 75.5
Nitab4.5_0004848g0030 Nicotiana tabacum HOM05D005017 ORTHO05D006044 1.1e-88 330.5 246 74.4
Gohir.D03G057100 Gossypium hirsutum HOM05D005017 ORTHO05D006044 1.5e-88 330.1 246 75.2
CANSAT56G3588 Cannabis sativa HOM05D005017 ORTHO05D006044 5.6e-88 328.2 246 71.5
Gohir.A02G116100 Gossypium hirsutum HOM05D005017 ORTHO05D006044 5.6e-88 328.2 247 74.5
Nitab4.5_0006071g0010 Nicotiana tabacum HOM05D005017 ORTHO05D006044 5.6e-88 328.2 245 74.3
Migut.I00995 Erythranthe guttata HOM05D005017 ORTHO05D006044 9.5e-88 327.4 244 69.7
Manes.04G137400 Manihot esculenta HOM05D005017 ORTHO05D006044 9.5e-88 327.4 246 73.6
MSTRG.22609 Avicennia marina HOM05D005017 ORTHO05D006044 1.2e-87 327.0 246 72.0
Lsat_1_v5_gn_1_36441 Lactuca sativa HOM05D005017 ORTHO05D006044 1.2e-87 327.0 248 75.0
Potri.001G193700 Populus trichocarpa HOM05D005017 ORTHO05D006044 1.1e-86 323.9 246 75.6
Nn8g38928 Nelumbo nucifera HOM05D005017 ORTHO05D006044 1.4e-86 323.6 245 72.7
Atru.chr1.3634 Acer truncatum HOM05D005017 ORTHO05D006044 3.1e-86 322.4 247 73.7
HanXRQChr04g0095781 Helianthus annuus HOM05D005017 ORTHO05D006044 6.8e-86 321.2 248 72.2
TWI79G0337 Tripterygium wilfordii HOM05D005017 ORTHO05D006044 8.9e-86 320.9 246 74.0
MELO3C024403.2 Cucumis melo HOM05D005017 ORTHO05D006044 4.4e-85 318.5 248 71.8
Dinv30400 Davidia involucrata HOM05D005017 ORTHO05D006044 5.8e-85 318.2 248 68.5
Cc04_g02270 Coffea canephora HOM05D005017 ORTHO05D006044 7.5e-85 317.8 237 74.3
ECA247G1989 Erigeron canadensis HOM05D005017 ORTHO05D006044 1.3e-84 317.0 246 72.8
CsaV3_7G034910 Cucumis sativus L. HOM05D005017 ORTHO05D006044 1.7e-84 316.6 248 71.8
Ah.01g016970 Amaranthus hybridus HOM05D005017 ORTHO05D006044 2.2e-84 316.2 249 72.7
PGR102G3241 Punica granatum HOM05D005017 ORTHO05D006044 2.2e-84 316.2 247 72.9
Cpa.g.sc663.1 Carica papaya HOM05D005017 ORTHO05D006044 8.3e-84 314.3 246 69.1
COL.COLO4_30606 Corchorus olitorius HOM05D005017 ORTHO05D006044 1.1e-83 313.9 246 72.8
TAR624G0026 Trochodendron aralioides HOM05D005017 ORTHO05D006044 2.4e-83 312.8 246 71.1
CAN.G1668.3 Capsicum annuum HOM05D005017 ORTHO05D006044 4.1e-83 312.0 245 72.2
Phvul.010G142100 Phaseolus vulgaris HOM05D005017 ORTHO05D006044 4.1e-83 312.0 247 67.6
ClCG09G000540 Citrullus lanatus HOM05D005017 ORTHO05D006044 5.4e-83 311.6 247 69.2
PGSC0003DMG401002511 Solanum tuberosum HOM05D005017 ORTHO05D006044 7.1e-83 311.2 247 71.7
Atru.chr1.3630 Acer truncatum HOM05D005017 ORTHO05D006044 9.2e-83 310.8 241 73.4
Sed0003007 Sechium edule HOM05D005017 ORTHO05D006044 1.2e-82 310.5 247 70.9
Actinidia21740 Actinidia chinensis HOM05D005017 ORTHO05D006044 1.6e-82 310.1 245 70.2
Glyma.07G012600 Glycine max HOM05D005017 ORTHO05D006044 1.6e-82 310.1 245 68.2
Sopen03g040120 Solanum pennellii HOM05D005017 ORTHO05D006044 1.6e-82 310.1 247 71.3
CSS0030454 Camellia sinensis var. sinensis HOM05D005017 ORTHO05D006044 2.7e-82 309.3 247 69.6
TPR.G8766 Trifolium pratense HOM05D005017 ORTHO05D006044 2.7e-82 309.3 246 68.3
EL10Ac9g21132 Beta vulgaris HOM05D005017 ORTHO05D006044 6.0e-82 308.1 245 71.8
CiPaw.01G227300 Carya illinoinensis HOM05D005017 ORTHO05D006044 1.3e-81 307.0 251 68.5
Eucgr.F03103 Eucalyptus grandis HOM05D005017 ORTHO05D006044 3.9e-81 305.4 246 71.1
Medtr8g015590 Medicago truncatula HOM05D005017 ORTHO05D006044 3.9e-81 305.4 246 68.7
Glyma.08G196300 Glycine max HOM05D005017 ORTHO05D006044 6.6e-81 304.7 246 69.9
Peaxi162Scf00038g01246 Petunia axillaris HOM05D005017 ORTHO05D006044 8.6e-81 304.3 204 74.5
Os01g0558300 Oryza sativa ssp. japonica HOM05D005017 ORTHO05D006044 1.1e-80 303.9 250 70.4
VMungo0331G1330 Vigna mungo HOM05D005017 ORTHO05D006044 1.1e-80 303.9 248 65.3
Prupe.3G052700 Prunus persica HOM05D005017 ORTHO05D006044 1.5e-80 303.5 246 71.1
MD09G1196300 Malus domestica HOM05D005017 ORTHO05D006044 4.3e-80 302.0 248 71.0
Rhsim08G0231100 Rhododendron simsii HOM05D005017 ORTHO05D006044 5.6e-80 301.6 257 66.9
AUR62038338 Chenopodium quinoa HOM05D005017 ORTHO05D006044 7.3e-80 301.2 247 70.0
Lj3g0014772 Lotus japonicus HOM05D005017 ORTHO05D006044 1.2e-79 300.4 247 69.6
GSVIVG01016892001 Vitis vinifera HOM05D005017 ORTHO05D006044 1.6e-79 300.1 238 71.8
Ca_23294_v3 Cicer arietinum L. HOM05D005017 ORTHO05D006044 2.1e-79 299.7 247 66.8
FAN14G3976 Fragaria x ananassa HOM05D005017 ORTHO05D006044 3.6e-79 298.9 251 71.7
AUR62023908 Chenopodium quinoa HOM05D005017 ORTHO05D006044 4.7e-79 298.5 247 69.2
MD17G1177100 Malus domestica HOM05D005017 ORTHO05D006044 4.7e-79 298.5 247 70.4
Dinv37934 Davidia involucrata HOM05D005017 ORTHO05D006044 6.2e-79 298.1 248 70.2
Psat4g194480 Pisum sativum HOM05D005017 ORTHO05D006044 8.1e-79 297.7 247 66.0
TWI31G0253 Tripterygium wilfordii HOM05D005017 ORTHO05D006044 1.4e-78 297.0 247 68.4
Solyc03g121310.2 Solanum lycopersicum HOM05D005017 ORTHO05D006044 2.4e-78 296.2 252 68.3
Hma1.2p1_0679F.1_g202280 Hydrangea macrophylla HOM05D005017 ORTHO05D006044 6.8e-78 294.7 243 70.8
Lj5C49T18 Lonicera japonica HOM05D005017 ORTHO05D006044 6.8e-78 294.7 195 74.9
MBI01_g27633_MAGBIO Magnolia biondii HOM05D005017 ORTHO05D006044 6.8e-78 294.7 249 66.3
HanXRQChr12g0360701 Helianthus annuus HOM05D005017 ORTHO05D006044 8.9e-78 294.3 246 65.9
CDE05G2485 Ceratophyllum demersum HOM05D005017 ORTHO05D006044 2.0e-77 293.1 245 66.9
Lalb_Chr01g0013321 Lupinus albus HOM05D005017 ORTHO05D006044 7.6e-77 291.2 245 69.0
HPP92_023230 Vanilla planifolia HOM05D005017 ORTHO05D006044 1.7e-76 290.0 247 67.6
Aqoxy2G03852 Aquilegia oxysepala HOM05D005017 ORTHO05D006044 2.2e-76 289.7 251 66.5
FvH4_6g32940 Fragaria vesca HOM05D005017 ORTHO05D006044 2.2e-76 289.7 251 70.1
RcHm_v2.0_Chr2g0142451 Rosa chinensis HOM05D005017 ORTHO05D006044 2.2e-76 289.7 248 69.0
Lalb_Chr04g0263111 Lupinus albus HOM05D005017 ORTHO05D006044 3.8e-76 288.9 247 68.8
Zm00001eb162290 Zea mays HOM05D005017 ORTHO05D006044 4.9e-76 288.5 246 67.5
FAN09G3568 Fragaria x ananassa HOM05D005017 ORTHO05D006044 6.4e-76 288.1 251 69.7
Sc12g0009900 Simmondsia chinensis HOM05D005017 ORTHO05D006044 8.4e-76 287.7 210 68.1
QL05p015800 Quercus lobata HOM05D005017 ORTHO05D006044 1.9e-75 286.6 345 52.8
DCAR_026373 Daucus carota HOM05D005017 ORTHO05D006044 9.2e-75 284.3 266 63.2
Lsat_1_v5_gn_5_133981 Lactuca sativa HOM05D005017 ORTHO05D006044 2.7e-74 282.7 246 65.4
ATR0789G068 Amborella trichopoda HOM05D005017 ORTHO05D006044 1.1e-72 277.3 244 61.1
Cfa003607 Carpinus fangiana HOM05D005017 ORTHO05D006044 1.6e-71 273.5 222 63.1
SEGI_04320 Sequoiadendron giganteum HOM05D005017 ORTHO05D006044 1.6e-71 273.5 243 64.6
Ah.01g004460 Amaranthus hybridus HOM05D005017 ORTHO05D006044 1.4e-70 270.4 289 59.9
Mapoly0076s0035 Marchantia polymorpha HOM05D005017 ORTHO05D006044 3.1e-70 269.2 251 61.0
arahy.Tifrunner.gnm1.ann1.ZK2LT4 Arachis hypogaea HOM05D005017 ORTHO05D006044 1.2e-69 267.3 246 66.7
arahy.Tifrunner.gnm1.ann1.TCAK26 Arachis hypogaea HOM05D005017 ORTHO05D006044 7.6e-69 264.6 246 65.9
SalBow6G5092 Salvia bowleyana HOM05D005017 ORTHO05D006044 1.3e-68 263.8 248 60.9
PSO210G2569 Papaver somniferum HOM05D005017 ORTHO05D006044 6.4e-68 261.5 242 64.0
vmacro18822 Vaccinium macrocarpon HOM05D005017 ORTHO05D006044 7.1e-67 258.1 270 59.3
SGA_v2.0_scaffold45G16987 Striga asiatica HOM05D005017 ORTHO05D006044 1.3e-65 253.8 236 64.8
FAN05G4929 Fragaria x ananassa HOM05D005017 ORTHO05D006044 1.7e-65 253.4 334 52.4
Pp3c5_13990 Physcomitrium patens HOM05D005017 ORTHO05D006044 9.6e-64 247.7 250 59.6
Sabra01G0156200 Salix brachista HOM05D000200 ORTHO05D000262 2.8e-63 246.1 281 53.7
unitig_0.g2868 Utricularia gibba HOM05D005017 ORTHO05D006044 4.0e-62 242.3 248 56.0
Pp3c27_5930 Physcomitrium patens HOM05D005017 ORTHO05D006044 2.6e-61 239.6 245 58.0
BcaB02g11274 Brassica carinata HOM05D005017 ORTHO05D006044 1.3e-60 237.3 246 58.5
BcaB07g33629 Brassica carinata HOM05D005017 ORTHO05D006044 4.2e-59 232.3 166 78.3
ECA234G0069 Erigeron canadensis HOM05D005017 ORTHO05D006044 6.0e-58 228.4 246 54.5
Haze_15918 Corylus avellana HOM05D005017 ORTHO05D006044 1.8e-57 226.9 179 64.2
SMO300G0020 Selaginella moellendorffii HOM05D005017 ORTHO05D006044 3.3e-56 222.6 248 56.5
Lj9A517T55 Lonicera japonica HOM05D005017 ORTHO05D006044 2.4e-54 216.5 215 55.3
Zm00001eb356680 Zea mays HOM05D005017 ORTHO05D006044 9.9e-53 211.1 250 54.4
CBR_g78883 Chara braunii HOM05D005017 ORTHO05D006044 2.4e-51 206.5 232 48.7
Gohir.A05G133633 Gossypium hirsutum HOM05D005017 ORTHO05D006044 2.1e-50 203.4 250 51.2
CSS0006284 Camellia sinensis var. sinensis HOM05D005017 ORTHO05D006044 3.9e-49 199.1 149 68.5
Oeu052817.1 Olea europaea HOM05D005017 ORTHO05D006044 1.9e-48 196.8 137 71.5
A06p02280 Brassica napus HOM05D005017 ORTHO05D006044 9.6e-48 194.5 193 66.3
Actinidia32130 Actinidia chinensis HOM05D005017 ORTHO05D006044 6.2e-47 191.8 243 50.2
Gorai.009G139400 Gossypium raimondii HOM05D005017 ORTHO05D006044 6.5e-44 181.8 126 73.8
PSO170G1437 Papaver somniferum HOM05D005017 ORTHO05D006044 3.7e-39 166.0 129 64.3
Gohir.D05G135550 Gossypium hirsutum HOM05D005017 ORTHO05D006044 5.3e-38 162.2 138 65.2
Duzib192G1032 Durio zibethinus HOM05D005017 ORTHO05D006044 1.0e-36 157.9 257 41.6
Hma1.2p1_0679F.1_g202290 Hydrangea macrophylla HOM05D005017 ORTHO05D006044 1.1e-35 154.5 139 69.8
Aa31csc1849G10 Aethionema arabicum HOM05D005017 ORTHO05D006044 9.4e-35 151.4 102 87.3
PRCOL_00005001 Prasinoderma coloniale HOM05D005017 ORTHO05D006044 1.2e-29 134.4 233 35.2
Cre03.g201776 Chlamydomonas reinhardtii HOM05D005017 ORTHO05D006044 2.9e-28 129.8 214 35.0
MCO07G323 Micromonas commoda HOM05D005017 ORTHO05D006044 5.0e-28 129.0 233 36.9
FAN02G2875 Fragaria x ananassa HOM05D005017 ORTHO05D006044 3.2e-27 126.3 337 38.9
Oeu052818.1 Olea europaea HOM05D005017 ORTHO05D006044 4.7e-26 122.5 120 67.5
Aa31LG1G17240 Aethionema arabicum HOM05D005017 ORTHO05D006044 2.3e-25 120.2 61 95.1
Oeu026734.1 Olea europaea HOM05D005017 ORTHO05D006044 1.1e-22 111.3 73 75.3
PSO782G0965 Papaver somniferum HOM05D005017 ORTHO05D006044 2.4e-22 110.2 93 59.1
PSO135G0227 Papaver somniferum HOM05D005017 ORTHO05D006044 1.9e-19 100.5 100 54.0
PSO675G1433 Papaver somniferum HOM05D005017 ORTHO05D006044 6.1e-18 95.5 80 60.0
CSS0004179 Camellia sinensis var. sinensis HOM05D005017 ORTHO05D006044 5.2e-09 65.9 75 64.0
Mapoly0066s0045 Marchantia polymorpha HOM05D025310 ORTHO05D023473 4.8e-07 59.3 144 30.6
Hund07663 Selenicereus undatus HOM05D001165 ORTHO05D010360 1.1e-06 58.2 50 62.0
Migut.I01159 Erythranthe guttata HOM05D005017 ORTHO05D006044 3.1e-06 56.6 64 46.9
TAR383G0476 Trochodendron aralioides HOM05D005017 ORTHO05D006044 5.3e-06 55.8 34 67.6


User provided reference genes

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