Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C03p90100 Brassica napus HOM05D000073 ORTHO05D015520 2.1e-19 97.8 43 100.0
C03p90110 Brassica napus HOM05D000073 ORTHO05D015520 2.1e-19 97.8 43 100.0
C03p90120 Brassica napus HOM05D000073 ORTHO05D015520 2.1e-19 97.8 43 100.0
C03p90130 Brassica napus HOM05D000073 ORTHO05D015520 2.1e-19 97.8 43 100.0
C03p90140 Brassica napus HOM05D000073 ORTHO05D015520 2.1e-19 97.8 43 100.0
BolC3t21336H Brassica oleracea HOM05D000073 ORTHO05D000033 2.1e-19 97.8 43 100.0
A08p02700 Brassica napus HOM05D000073 ORTHO05D015520 4.7e-19 96.7 43 97.7
A08p02710 Brassica napus HOM05D000073 ORTHO05D015520 4.7e-19 96.7 43 97.7
A08p02720 Brassica napus HOM05D000073 ORTHO05D015520 4.7e-19 96.7 43 97.7
BolC3t21333H Brassica oleracea HOM05D000073 ORTHO05D000033 8.1e-19 95.9 43 97.7
CARHR041640 Cardamine hirsuta HOM05D000073 ORTHO05D000033 8.1e-19 95.9 42 97.6
CARHR041650 Cardamine hirsuta HOM05D000073 ORTHO05D000033 8.1e-19 95.9 42 97.6
BcaB04g17194 Brassica carinata HOM05D000073 ORTHO05D000033 1.1e-18 95.5 43 97.7
BcaB04g17196 Brassica carinata HOM05D000073 ORTHO05D000033 1.1e-18 95.5 43 97.7
BcaB04g17197 Brassica carinata HOM05D000073 ORTHO05D000033 1.1e-18 95.5 43 97.7
BcaB04g17198 Brassica carinata HOM05D000073 ORTHO05D000033 1.1e-18 95.5 43 97.7
BcaC06g31767 Brassica carinata HOM05D000073 ORTHO05D000033 3.1e-18 94.0 43 95.3
CARHR259760 Cardamine hirsuta HOM05D000073 ORTHO05D000033 6.8e-18 92.8 43 93.0
AL1G59380 Arabidopsis lyrata HOM05D000073 ORTHO05D000033 1.5e-17 91.7 43 90.7
Aa31LG10G10380 Aethionema arabicum HOM05D000073 ORTHO05D000033 2.0e-17 91.3 43 88.4
Aa31LG10G10390 Aethionema arabicum HOM05D000073 ORTHO05D000033 2.0e-17 91.3 43 88.4
A05p19950 Brassica napus HOM05D000073 ORTHO05D015520 2.0e-17 91.3 42 88.1
C05p33430 Brassica napus HOM05D000073 ORTHO05D000033 2.0e-17 91.3 42 88.1
BolC5t32066H Brassica oleracea HOM05D000073 ORTHO05D000033 2.0e-17 91.3 42 88.1
BraA05t20900Z Brassica rapa HOM05D000073 ORTHO05D000033 2.0e-17 91.3 42 88.1
THA.LOC104806960 Tarenaya hassleriana HOM05D000073 ORTHO05D000033 3.4e-17 90.5 40 92.5
BolC5t32056H Brassica oleracea HOM05D000073 ORTHO05D000033 5.8e-17 89.7 42 85.7
Carub.0001s4034 Capsella rubella HOM05D000073 ORTHO05D000033 5.8e-17 89.7 42 88.1
THA.LOC104806961 Tarenaya hassleriana HOM05D000073 ORTHO05D000033 5.8e-17 89.7 40 90.0
Carub.0001s4179 Capsella rubella HOM05D000073 ORTHO05D000033 7.5e-17 89.4 43 86.0
Aa31LG7G10420 Aethionema arabicum HOM05D000073 ORTHO05D000033 1.3e-16 88.6 43 86.0
AL1G52250 Arabidopsis lyrata HOM05D000073 ORTHO05D000033 1.3e-16 88.6 43 86.0
AL1G59360 Arabidopsis lyrata HOM05D000073 ORTHO05D000033 1.3e-16 88.6 43 86.0
AT1G47600 Arabidopsis thaliana HOM05D000073 ORTHO05D000033 1.3e-16 88.6 43 86.0
AT1G51470 Arabidopsis thaliana HOM05D000073 ORTHO05D000033 1.3e-16 88.6 43 86.0
BcaB02g11249 Brassica carinata HOM05D000073 ORTHO05D000033 1.7e-16 88.2 42 85.7
A05p19550 Brassica napus HOM05D000073 ORTHO05D000033 1.7e-16 88.2 42 85.7
A05p19560 Brassica napus HOM05D000073 ORTHO05D000033 1.7e-16 88.2 42 85.7
BraA05t20860Z Brassica rapa HOM05D000073 ORTHO05D000033 1.7e-16 88.2 42 85.7
Aa31LG10G5080 Aethionema arabicum HOM05D000073 ORTHO05D000033 2.2e-16 87.8 43 83.7
Aa31sc89G150 Aethionema arabicum HOM05D000073 ORTHO05D000033 2.2e-16 87.8 41 85.4
C05p33300 Brassica napus HOM05D000073 ORTHO05D000033 2.9e-16 87.4 42 83.3
C06p13020 Brassica napus HOM05D000073 ORTHO05D000033 2.9e-16 87.4 42 85.7
BolC6t36455H Brassica oleracea HOM05D000073 ORTHO05D015520 2.9e-16 87.4 42 85.7
BolC6t36459H Brassica oleracea HOM05D000073 ORTHO05D000033 2.9e-16 87.4 42 85.7
Thhalv10000681m.g Eutrema salsugineum HOM05D000073 ORTHO05D000033 3.7e-16 87.0 40 87.5
Thhalv10011390m.g Eutrema salsugineum HOM05D000073 ORTHO05D000033 3.7e-16 87.0 40 87.5
Thhalv10011399m.g Eutrema salsugineum HOM05D000073 ORTHO05D000033 4.9e-16 86.7 40 87.5
Aa31LG7G11350 Aethionema arabicum HOM05D000073 ORTHO05D000033 8.3e-16 85.9 40 85.0
C06p13090 Brassica napus HOM05D000073 ORTHO05D000033 8.3e-16 85.9 42 83.3
Thhalv10011400m.g Eutrema salsugineum HOM05D000073 ORTHO05D000033 3.2e-15 84.0 40 85.0
C06p13080 Brassica napus HOM05D000073 ORTHO05D000033 1.2e-14 82.0 42 83.3
BolC6t36463H Brassica oleracea HOM05D000073 ORTHO05D000033 1.6e-14 81.6 42 81.0
Carub.0007s2904 Capsella rubella HOM05D000073 ORTHO05D000033 2.7e-14 80.9 39 84.6
Thhalv10012352m.g Eutrema salsugineum HOM05D000073 ORTHO05D000033 6.0e-14 79.7 37 86.5
Carub.0007s1931 Capsella rubella HOM05D000073 ORTHO05D000033 7.8e-14 79.3 39 79.5
C06p13110 Brassica napus HOM05D000073 ORTHO05D000033 1.3e-13 78.6 42 78.6
Aa31LG10G5170 Aethionema arabicum HOM05D003754 ORTHO05D004530 3.9e-13 77.0 35 91.4
Thhalv10012108m.g Eutrema salsugineum HOM05D000073 ORTHO05D000033 6.6e-13 76.3 34 94.1
BcaB02g11180 Brassica carinata HOM05D000073 ORTHO05D015520 6.8e-10 66.2 35 74.3
A08p31760 Brassica napus HOM05D000073 ORTHO05D008214 1.2e-09 65.5 39 64.1
C08p16980 Brassica napus HOM05D000073 ORTHO05D008214 1.2e-09 65.5 39 64.1
BolC8t49324H Brassica oleracea HOM05D000073 ORTHO05D008214 1.2e-09 65.5 39 64.1
BraA08t35098Z Brassica rapa HOM05D000073 ORTHO05D008214 1.2e-09 65.5 39 64.1
THA.LOC104799092 Tarenaya hassleriana HOM05D000073 ORTHO05D000033 3.4e-09 63.9 40 65.0
C01p41970 Brassica napus HOM05D000073 ORTHO05D008214 2.9e-08 60.8 40 55.0
BolC1t04153H Brassica oleracea HOM05D000073 ORTHO05D008214 2.9e-08 60.8 40 55.0
Sp7g13110 Schrenkiella parvula HOM05D000073 ORTHO05D008214 3.7e-08 60.5 39 56.4
BcaC08g45925 Brassica carinata HOM05D000073 ORTHO05D008214 6.4e-08 59.7 39 56.4
A01p32890 Brassica napus HOM05D000073 ORTHO05D008214 6.4e-08 59.7 40 55.0
A07p31750 Brassica napus HOM05D000073 ORTHO05D008214 6.4e-08 59.7 39 56.4
C06p37220 Brassica napus HOM05D000073 ORTHO05D008214 6.4e-08 59.7 39 56.4
BolC6t38826H Brassica oleracea HOM05D000073 ORTHO05D008214 6.4e-08 59.7 39 56.4
BraA01t03410Z Brassica rapa HOM05D000073 ORTHO05D008214 6.4e-08 59.7 40 55.0
BraA07t30802Z Brassica rapa HOM05D000073 ORTHO05D008214 6.4e-08 59.7 39 56.4
AL6G37960 Arabidopsis lyrata HOM05D000073 ORTHO05D008214 1.1e-07 58.9 40 60.0
Thhalv10002470m.g Eutrema salsugineum HOM05D000073 ORTHO05D008214 1.1e-07 58.9 39 59.0
BcaB05g22004 Brassica carinata HOM05D000073 ORTHO05D008214 1.4e-07 58.5 39 59.0
BcaB07g31804 Brassica carinata HOM05D000073 ORTHO05D008214 1.4e-07 58.5 39 59.0
C09p12530 Brassica napus HOM05D000073 ORTHO05D008214 1.4e-07 58.5 39 59.0
CARHR184910 Cardamine hirsuta HOM05D000073 ORTHO05D008214 1.4e-07 58.5 41 58.5
A09p10590 Brassica napus HOM05D000073 ORTHO05D008214 1.9e-07 58.2 39 59.0
A09p10600 Brassica napus HOM05D000073 ORTHO05D008214 1.9e-07 58.2 39 59.0
BolC2t11930H Brassica oleracea HOM05D000073 ORTHO05D008214 3.2e-07 57.4 39 56.4
BraA09t36700Z Brassica rapa HOM05D000073 ORTHO05D008214 3.2e-07 57.4 39 59.0
CARHR187250 Cardamine hirsuta HOM05D000073 ORTHO05D008214 3.2e-07 57.4 40 62.5
AL8G21140 Arabidopsis lyrata HOM05D000073 ORTHO05D008214 4.1e-07 57.0 40 60.0
CARHR184940 Cardamine hirsuta HOM05D000073 ORTHO05D008214 4.1e-07 57.0 40 60.0
BcaB04g20528 Brassica carinata HOM05D000073 ORTHO05D008214 5.4e-07 56.6 40 47.5
BcaB05g22002 Brassica carinata HOM05D000073 ORTHO05D008214 5.4e-07 56.6 39 56.4
BcaB07g29971 Brassica carinata HOM05D000073 ORTHO05D008214 5.4e-07 56.6 39 56.4
BcaC03g17837 Brassica carinata HOM05D000073 ORTHO05D008214 5.4e-07 56.6 39 56.4
BcaC03g17838 Brassica carinata HOM05D000073 ORTHO05D008214 5.4e-07 56.6 39 56.4
BcaC03g17883 Brassica carinata HOM05D000073 ORTHO05D008214 5.4e-07 56.6 39 56.4
A02p39110 Brassica napus HOM05D000073 ORTHO05D008214 5.4e-07 56.6 39 56.4
A02p39140 Brassica napus HOM05D000073 ORTHO05D008214 5.4e-07 56.6 39 56.4
A02p39170 Brassica napus HOM05D000073 ORTHO05D008214 5.4e-07 56.6 39 56.4
A02p39480 Brassica napus HOM05D000073 ORTHO05D008214 5.4e-07 56.6 39 56.4
A03p29110 Brassica napus HOM05D000073 ORTHO05D008214 5.4e-07 56.6 39 56.4
A09p36610 Brassica napus HOM05D000073 ORTHO05D008214 5.4e-07 56.6 39 56.4
C02p58690 Brassica napus HOM05D000073 ORTHO05D008214 5.4e-07 56.6 39 56.4
C02p58720 Brassica napus HOM05D000073 ORTHO05D008214 5.4e-07 56.6 39 56.4
C02p58740 Brassica napus HOM05D000073 ORTHO05D008214 5.4e-07 56.6 39 56.4
C02p58770 Brassica napus HOM05D000073 ORTHO05D008214 5.4e-07 56.6 39 56.4
C02p59210 Brassica napus HOM05D000073 ORTHO05D008214 5.4e-07 56.6 39 56.4
C03p35380 Brassica napus HOM05D000073 ORTHO05D008214 5.4e-07 56.6 39 56.4
BolC2t11932H Brassica oleracea HOM05D000073 ORTHO05D008214 5.4e-07 56.6 39 56.4
BolC2t11935H Brassica oleracea HOM05D000073 ORTHO05D008214 5.4e-07 56.6 39 56.4
BolC2t11975H Brassica oleracea HOM05D000073 ORTHO05D008214 5.4e-07 56.6 39 56.4
BolC2t11981H Brassica oleracea HOM05D000073 ORTHO05D008214 5.4e-07 56.6 39 56.4
BolC2t11983H Brassica oleracea HOM05D000073 ORTHO05D008214 5.4e-07 56.6 39 56.4
BolC9t54147H Brassica oleracea HOM05D000073 ORTHO05D008214 5.4e-07 56.6 39 56.4
BolC9t54148H Brassica oleracea HOM05D000073 ORTHO05D008214 5.4e-07 56.6 39 56.4
BraA02t08878Z Brassica rapa HOM05D000073 ORTHO05D008214 5.4e-07 56.6 39 56.4
BraA02t08880Z Brassica rapa HOM05D000073 ORTHO05D008214 5.4e-07 56.6 39 56.4
BraA02t08882Z Brassica rapa HOM05D000073 ORTHO05D008214 5.4e-07 56.6 39 56.4
BraA02t08914Z Brassica rapa HOM05D000073 ORTHO05D008214 5.4e-07 56.6 39 56.4
BraA03t12106Z Brassica rapa HOM05D000073 ORTHO05D008214 5.4e-07 56.6 39 56.4
BraA09t39181Z Brassica rapa HOM05D000073 ORTHO05D008214 5.4e-07 56.6 39 56.4
AL6G37970 Arabidopsis lyrata HOM05D000073 ORTHO05D008214 7.1e-07 56.2 40 60.0
CARHR185610 Cardamine hirsuta HOM05D000073 ORTHO05D015520 9.2e-07 55.8 41 58.5
Cpa.g.sc17.152 Carica papaya HOM05D000073 ORTHO05D000033 9.2e-07 55.8 40 50.0
BcaB04g18272 Brassica carinata HOM05D000073 ORTHO05D000033 1.2e-06 55.5 40 50.0
BcaC04g23061 Brassica carinata HOM05D000073 ORTHO05D008214 1.2e-06 55.5 39 56.4
C09p12550 Brassica napus HOM05D000073 ORTHO05D008214 1.2e-06 55.5 39 56.4
C09p12560 Brassica napus HOM05D000073 ORTHO05D008214 1.2e-06 55.5 39 56.4
C09p12580 Brassica napus HOM05D000073 ORTHO05D008214 1.2e-06 55.5 39 56.4
Cpa.g.c29746.1 Carica papaya HOM05D000073 ORTHO05D000033 1.2e-06 55.5 40 50.0
Sp2g07490 Schrenkiella parvula HOM05D000073 ORTHO05D008214 1.2e-06 55.5 39 53.8
A08p11560 Brassica napus HOM05D000073 ORTHO05D008214 1.6e-06 55.1 40 50.0
BolC8t48254H Brassica oleracea HOM05D000073 ORTHO05D008214 1.6e-06 55.1 40 50.0
BolC8t48265H Brassica oleracea HOM05D000073 ORTHO05D008214 1.6e-06 55.1 39 51.3
BraA08t33148Z Brassica rapa HOM05D000073 ORTHO05D008214 1.6e-06 55.1 40 50.0
Glyma.15G031400 Glycine max HOM05D000073 ORTHO05D000033 1.6e-06 55.1 42 52.4
BraA08t33155Z Brassica rapa HOM05D000073 ORTHO05D008214 2.1e-06 54.7 39 51.3
BraA08t33158Z Brassica rapa HOM05D000073 ORTHO05D008214 2.1e-06 54.7 39 51.3
Carub.0006s2377 Capsella rubella HOM05D000073 ORTHO05D008214 2.7e-06 54.3 40 57.5
Phvul.005G150600 Phaseolus vulgaris HOM05D000073 ORTHO05D000033 2.7e-06 54.3 42 50.0
THA.LOC104815120 Tarenaya hassleriana HOM05D000073 ORTHO05D008214 2.7e-06 54.3 42 54.8
CARHR184920 Cardamine hirsuta HOM05D000073 ORTHO05D008214 4.6e-06 53.5 41 58.5
CARHR187260 Cardamine hirsuta HOM05D000073 ORTHO05D008214 4.6e-06 53.5 40 60.0
AT5G25980 Arabidopsis thaliana HOM05D000073 ORTHO05D008214 6.0e-06 53.1 40 60.0
AT5G26000 Arabidopsis thaliana HOM05D000073 ORTHO05D008214 6.0e-06 53.1 40 55.0
Cc00_g09660 Coffea canephora HOM05D000073 ORTHO05D000033 6.0e-06 53.1 43 51.2
Thhalv10003954m.g Eutrema salsugineum HOM05D000073 ORTHO05D008214 6.0e-06 53.1 39 51.3
HanXRQChr13g0426271 Helianthus annuus HOM05D000073 ORTHO05D000033 6.0e-06 53.1 41 51.2
Medtr5g071520 Medicago truncatula HOM05D000073 ORTHO05D000033 6.0e-06 53.1 42 47.6
Pp3c4_26640 Physcomitrium patens HOM05D000073 ORTHO05D000033 6.0e-06 53.1 42 50.0
QL01p006809 Quercus lobata HOM05D000073 ORTHO05D000033 6.0e-06 53.1 42 47.6
THA.LOC104799180 Tarenaya hassleriana HOM05D000073 ORTHO05D008214 6.0e-06 53.1 41 53.7
Aa31LG11G4710 Aethionema arabicum HOM05D000073 ORTHO05D008214 7.8e-06 52.8 40 57.5
Carub.0001s4139 Capsella rubella HOM05D000073 ORTHO05D012936 7.8e-06 52.8 40 52.5
CARHR185630 Cardamine hirsuta HOM05D000073 ORTHO05D008214 7.8e-06 52.8 41 56.1
Prupe.6G145100 Prunus persica HOM05D000073 ORTHO05D000033 7.8e-06 52.8 42 47.6
Sc16g0011850 Simmondsia chinensis HOM05D000073 ORTHO05D000033 7.8e-06 52.8 40 50.0


User provided reference genes

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