Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C03p89870 Brassica napus HOM05D004114 ORTHO05D004667 1.1e-19 99.0 49 100.0
BcaC01g01258 Brassica carinata HOM05D004114 ORTHO05D004667 7.0e-19 96.3 49 98.0
BraA08t32330Z Brassica rapa HOM05D004114 ORTHO05D004667 1.5e-13 78.6 51 84.3
Sp1g38010 Schrenkiella parvula HOM05D004114 ORTHO05D004667 9.8e-13 75.9 51 78.4
C03p89890 Brassica napus HOM05D004114 ORTHO05D004667 2.9e-12 74.3 45 80.0
Thhalv10011291m.g Eutrema salsugineum HOM05D004114 ORTHO05D004667 3.7e-12 73.9 51 76.5
Aa31LG10G3520 Aethionema arabicum HOM05D004114 ORTHO05D004667 6.4e-12 73.2 51 72.5
AT1G51350 Arabidopsis thaliana HOM05D004114 ORTHO05D004667 8.3e-12 72.8 50 74.0
AL1G59170 Arabidopsis lyrata HOM05D004114 ORTHO05D004667 1.1e-11 72.4 50 72.0
THA.LOC104817907 Tarenaya hassleriana HOM05D004114 ORTHO05D004667 1.9e-11 71.6 51 70.6
BcaB07g33582 Brassica carinata HOM05D004114 ORTHO05D004667 4.1e-11 70.5 51 72.5
BraA06t23464Z Brassica rapa HOM05D004114 ORTHO05D004667 5.4e-11 70.1 51 72.5
Carub.0001s4022 Capsella rubella HOM05D004114 ORTHO05D004667 1.2e-10 68.9 50 70.0
BcaC08g43302 Brassica carinata HOM05D004114 ORTHO05D004667 3.5e-10 67.4 51 70.6
BolC6t35762H Brassica oleracea HOM05D004114 ORTHO05D004667 3.5e-10 67.4 51 70.6
CARHR041420 Cardamine hirsuta HOM05D004114 ORTHO05D004667 7.8e-10 66.2 51 68.6
CsaV3_1G042830 Cucumis sativus L. HOM05D004114 ORTHO05D004667 1.7e-09 65.1 49 63.3
MELO3C015192.2 Cucumis melo HOM05D004114 ORTHO05D004667 2.3e-09 64.7 49 65.3
Peaxi162Scf00004g00237 Petunia axillaris HOM05D004114 ORTHO05D004667 2.3e-09 64.7 49 63.3
Thecc.09G233600 Theobroma cacao HOM05D004114 ORTHO05D004667 3.9e-09 63.9 50 62.0
TWI34G1345 Tripterygium wilfordii HOM05D004114 ORTHO05D004667 3.9e-09 63.9 49 61.2
ClCG03G013250 Citrullus lanatus HOM05D004114 ORTHO05D004667 6.6e-09 63.2 49 61.2
Dinv22178 Davidia involucrata HOM05D004114 ORTHO05D004667 6.6e-09 63.2 49 65.3
Gohir.A09G114400 Gossypium hirsutum HOM05D004114 ORTHO05D004667 6.6e-09 63.2 51 60.8
Phvul.008G283500 Phaseolus vulgaris HOM05D004114 ORTHO05D004667 8.6e-09 62.8 51 56.9
Gohir.D09G111100 Gossypium hirsutum HOM05D004114 ORTHO05D004667 1.1e-08 62.4 51 60.8
Gorai.006G128700 Gossypium raimondii HOM05D004114 ORTHO05D004667 1.1e-08 62.4 51 60.8
Ah.06g194200 Amaranthus hybridus HOM05D004114 ORTHO05D004667 1.5e-08 62.0 49 59.2
Manes.06G164400 Manihot esculenta HOM05D004114 ORTHO05D004667 1.5e-08 62.0 49 59.2
VMungo0647G1293 Vigna mungo HOM05D004114 ORTHO05D004667 1.5e-08 62.0 51 56.9
Lsat_1_v5_gn_2_97760 Lactuca sativa HOM05D004114 ORTHO05D004667 2.5e-08 61.2 49 59.2
Oeu054838.1 Olea europaea HOM05D004114 ORTHO05D004667 2.5e-08 61.2 49 61.2
Duzib168G0105 Durio zibethinus HOM05D004114 ORTHO05D004667 3.3e-08 60.8 51 60.8
vmacro12717 Vaccinium macrocarpon HOM05D004114 ORTHO05D004667 3.3e-08 60.8 49 61.2
Eucgr.J00767 Eucalyptus grandis HOM05D004114 ORTHO05D004667 4.3e-08 60.5 47 63.8
HanXRQChr07g0197461 Helianthus annuus HOM05D004114 ORTHO05D004667 4.3e-08 60.5 49 59.2
Actinidia06341 Actinidia chinensis HOM05D004114 ORTHO05D004667 7.3e-08 59.7 49 59.2
Cpa.g.sc84.54 Carica papaya HOM05D004114 ORTHO05D004667 7.3e-08 59.7 51 56.9
DCAR_029951 Daucus carota HOM05D004114 ORTHO05D004667 7.3e-08 59.7 50 56.0
Prupe.4G249300 Prunus persica HOM05D004114 ORTHO05D004667 7.3e-08 59.7 49 59.2
MD11G1193200 Malus domestica HOM05D004114 ORTHO05D004667 9.5e-08 59.3 49 57.1
Psat2g005360 Pisum sativum HOM05D004114 ORTHO05D004667 9.5e-08 59.3 51 54.9
QL01p004694 Quercus lobata HOM05D004114 ORTHO05D004667 9.5e-08 59.3 49 57.1
TWI60G1569 Tripterygium wilfordii HOM05D004114 ORTHO05D004667 9.5e-08 59.3 49 59.2
Actinidia23972 Actinidia chinensis HOM05D004114 ORTHO05D004667 1.2e-07 58.9 49 63.3
Solyc11g065750.2 Solanum lycopersicum HOM05D004114 ORTHO05D004667 1.2e-07 58.9 49 61.2
Sopen11g025510 Solanum pennellii HOM05D004114 ORTHO05D004667 1.2e-07 58.9 48 62.5
Glyma.02G304000 Glycine max HOM05D004114 ORTHO05D004667 1.6e-07 58.5 49 53.1
Duzib150G0789 Durio zibethinus HOM05D004114 ORTHO05D004667 2.1e-07 58.2 51 56.9
GSVIVG01025259001 Vitis vinifera HOM05D004114 ORTHO05D004667 2.1e-07 58.2 49 59.2
EL10Ac4g10249 Beta vulgaris HOM05D004114 ORTHO05D004667 2.8e-07 57.8 50 56.0
EL10Ac4g10252 Beta vulgaris HOM05D004114 ORTHO05D004667 2.8e-07 57.8 50 56.0
ECA238G2774 Erigeron canadensis HOM05D004114 ORTHO05D004667 3.6e-07 57.4 45 62.2
FvH4_3g28860 Fragaria vesca HOM05D004114 ORTHO05D004667 3.6e-07 57.4 49 53.1
Lj1A330G24 Lonicera japonica HOM05D004114 ORTHO05D004667 3.6e-07 57.4 49 53.1
PGR119G0430 Punica granatum HOM05D004114 ORTHO05D004667 3.6e-07 57.4 51 58.8
A06p02560 Brassica napus HOM05D004114 ORTHO05D004667 4.7e-07 57.0 35 74.3
Medtr5g096860 Medicago truncatula HOM05D004114 ORTHO05D004667 4.7e-07 57.0 51 54.9
PSO339G0497 Papaver somniferum HOM05D004114 ORTHO05D004667 4.7e-07 57.0 50 58.0
RcHm_v2.0_Chr5g0052041 Rosa chinensis HOM05D004114 ORTHO05D004667 6.2e-07 56.6 49 55.1
CAN.G599.3 Capsicum annuum HOM05D004114 ORTHO05D004667 1.1e-06 55.8 49 55.1
Ca_06427_v3 Cicer arietinum L. HOM05D004114 ORTHO05D004667 1.1e-06 55.8 50 54.0
MD03G1175100 Malus domestica HOM05D004114 ORTHO05D004667 1.1e-06 55.8 49 57.1
Phvul.006G062700 Phaseolus vulgaris HOM05D004114 ORTHO05D004667 1.1e-06 55.8 51 52.9
CSS0035176 Camellia sinensis var. sinensis HOM05D004114 ORTHO05D004667 1.4e-06 55.5 49 57.1
CSS0048735 Camellia sinensis var. sinensis HOM05D004114 ORTHO05D004667 1.4e-06 55.5 49 57.1
Cc00_g05950 Coffea canephora HOM05D004114 ORTHO05D004667 1.8e-06 55.1 49 55.1
Oeu015664.1 Olea europaea HOM05D004114 ORTHO05D004667 2.3e-06 54.7 48 56.2
Potri.009G053400 Populus trichocarpa HOM05D004114 ORTHO05D004667 2.3e-06 54.7 49 53.1
Sabra09G0038900 Salix brachista HOM05D004114 ORTHO05D004667 2.3e-06 54.7 49 53.1
TPR.G1262 Trifolium pratense HOM05D004114 ORTHO05D004667 2.3e-06 54.7 51 52.9
C06p06490 Brassica napus HOM05D004114 ORTHO05D004667 3.1e-06 54.3 35 71.4
arahy.Tifrunner.gnm1.ann1.49TU8N Arachis hypogaea HOM05D004114 ORTHO05D004667 4.0e-06 53.9 51 49.0
arahy.Tifrunner.gnm1.ann1.Q5U408 Arachis hypogaea HOM05D004114 ORTHO05D004667 4.0e-06 53.9 51 49.0
COL.COLO4_07585 Corchorus olitorius HOM05D004114 ORTHO05D004667 4.0e-06 53.9 48 56.2
FAN16G1351 Fragaria x ananassa HOM05D004114 ORTHO05D004667 4.0e-06 53.9 49 51.0
Glyma.08G335400 Glycine max HOM05D004114 ORTHO05D004667 4.0e-06 53.9 51 51.0
LjContig00081g0000990 Lotus japonicus HOM05D004114 ORTHO05D004667 4.0e-06 53.9 51 52.9
Lalb_Chr18g0050571 Lupinus albus HOM05D004114 ORTHO05D004667 4.0e-06 53.9 51 51.0
Migut.D00601 Erythranthe guttata HOM05D004114 ORTHO05D004667 5.2e-06 53.5 50 52.0
Nn2g15370 Nelumbo nucifera HOM05D004114 ORTHO05D004667 5.2e-06 53.5 43 65.1
Nn7g36204 Nelumbo nucifera HOM05D004114 ORTHO05D004667 5.2e-06 53.5 43 65.1
SalBow6G3263 Salvia bowleyana HOM05D004114 ORTHO05D004667 6.8e-06 53.1 50 52.0


User provided reference genes

Program Settings