Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C03p89760 Brassica napus HOM05D001846 ORTHO05D005785 2.6e-208 728.8 451 100.0
BcaC01g01249 Brassica carinata HOM05D001846 ORTHO05D005785 1.3e-204 716.5 452 98.9
BolC3t21298H Brassica oleracea HOM05D001846 ORTHO05D005785 2.8e-199 698.7 452 96.2
BraA08t32338Z Brassica rapa HOM05D001846 ORTHO05D005785 2.2e-183 646.0 453 89.2
A08p03060 Brassica napus HOM05D001846 ORTHO05D005785 5.4e-182 641.3 453 90.1
BcaB04g17234 Brassica carinata HOM05D001846 ORTHO05D005785 5.6e-163 578.2 455 82.9
Thhalv10011423m.g Eutrema salsugineum HOM05D001846 ORTHO05D005785 3.5e-133 479.2 501 65.9
AT1G51405 Arabidopsis thaliana HOM05D001846 ORTHO05D005785 1.1e-131 474.2 493 62.5
Carub.0001s4028 Capsella rubella HOM05D001846 ORTHO05D005785 4.8e-130 468.8 496 61.5
Sp1g38080 Schrenkiella parvula HOM05D001846 ORTHO05D005785 6.9e-129 464.9 509 62.5
CARHR041560 Cardamine hirsuta HOM05D001846 ORTHO05D005785 1.5e-128 463.8 482 65.4
BraA06t23456Z Brassica rapa HOM05D001846 ORTHO05D005785 1.5e-123 447.2 450 65.6
BcaB07g33587 Brassica carinata HOM05D001846 ORTHO05D005785 6.3e-122 441.8 431 66.8
AL1G59260 Arabidopsis lyrata HOM05D001846 ORTHO05D005785 3.1e-121 439.5 484 68.2
Aa31LG10G3580 Aethionema arabicum HOM05D000089 ORTHO05D005785 5.3e-121 438.7 489 63.0
A06p02500 Brassica napus HOM05D001846 ORTHO05D005785 1.3e-111 407.5 431 64.7
C06p06570 Brassica napus HOM05D001846 ORTHO05D005785 2.2e-106 390.2 450 58.9
BcaC08g43310 Brassica carinata HOM05D001846 ORTHO05D005785 7.7e-104 381.7 450 58.7
BolC6t35770H Brassica oleracea HOM05D001846 ORTHO05D005785 1.7e-103 380.6 450 58.7
THA.LOC104817913 Tarenaya hassleriana HOM05D001846 ORTHO05D005785 1.3e-71 274.6 461 43.0
Cpa.g.sc84.42 Carica papaya HOM05D001846 ORTHO05D005785 7.3e-62 242.3 491 37.7
QL01p004435 Quercus lobata HOM05D001846 ORTHO05D005785 1.8e-60 237.7 504 38.3
QL01p004534 Quercus lobata HOM05D001846 ORTHO05D005785 4.0e-60 236.5 504 38.3
Thecc.09G235700 Theobroma cacao HOM05D001846 ORTHO05D005785 1.3e-58 231.5 501 37.7
Thecc.09G236100 Theobroma cacao HOM05D001846 ORTHO05D005785 1.3e-58 231.5 501 37.7
Manes.06G163200 Manihot esculenta HOM05D001846 ORTHO05D005785 2.4e-57 227.3 503 39.4
Manes.14G003700 Manihot esculenta HOM05D001846 ORTHO05D005785 7.1e-57 225.7 498 35.5
TWI60G1588 Tripterygium wilfordii HOM05D001846 ORTHO05D005785 7.1e-57 225.7 515 37.3
CANSAT54G0460 Cannabis sativa HOM05D001846 ORTHO05D005785 1.2e-56 224.9 521 34.9
CiPaw.13G159200 Carya illinoinensis HOM05D001846 ORTHO05D005785 1.6e-56 224.6 496 35.9
Sabra09G0038200 Salix brachista HOM05D001846 ORTHO05D005785 3.5e-56 223.4 501 35.7
Atru.chr3.2697 Acer truncatum HOM05D001846 ORTHO05D005785 2.3e-55 220.7 511 36.0
Duzib150G0388 Durio zibethinus HOM05D001846 ORTHO05D005785 3.0e-55 220.3 501 36.3
Duzib168G1640 Durio zibethinus HOM05D001846 ORTHO05D005785 4.3e-54 216.5 520 39.4
Prupe.4G251400 Prunus persica HOM05D001846 ORTHO05D005785 2.1e-53 214.2 497 41.9
FvH4_3g28690 Fragaria vesca HOM05D001846 ORTHO05D005785 3.1e-52 210.3 500 39.4
TAR369G0438 Trochodendron aralioides HOM05D001846 ORTHO05D005785 2.0e-51 207.6 500 35.2
Gohir.D09G110300 Gossypium hirsutum HOM05D001846 ORTHO05D005785 2.6e-51 207.2 501 34.5
Cfa009785 Carpinus fangiana HOM05D001846 ORTHO05D005785 3.4e-51 206.8 508 36.6
FAN21G3148 Fragaria x ananassa HOM05D001846 ORTHO05D005785 4.4e-51 206.5 502 37.3
Eucgr.J00759 Eucalyptus grandis HOM05D001846 ORTHO05D005785 7.6e-51 205.7 520 34.6
Gohir.D13G220500 Gossypium hirsutum HOM05D001846 ORTHO05D005785 9.9e-51 205.3 494 35.4
Ciclev10014939m.g Citrus clementina HOM05D001846 ORTHO05D005785 1.7e-50 204.5 502 34.1
PSO170G6025 Papaver somniferum HOM05D001846 ORTHO05D005785 3.8e-50 203.4 534 34.5
Hund22024 Selenicereus undatus HOM05D001846 ORTHO05D005785 2.4e-49 200.7 364 38.7
MD11G1191400 Malus domestica HOM05D001846 ORTHO05D005785 3.2e-49 200.3 510 38.4
Gorai.006G127900 Gossypium raimondii HOM05D001846 ORTHO05D005785 1.2e-48 198.4 501 34.3
MD03G1173500 Malus domestica HOM05D001846 ORTHO05D005785 1.2e-48 198.4 506 41.7
FAN25G3740 Fragaria x ananassa HOM05D001846 ORTHO05D005785 2.1e-48 197.6 468 40.6
FAN16G0902 Fragaria x ananassa HOM05D001846 ORTHO05D005785 3.5e-48 196.8 533 34.9
PGR119G1478 Punica granatum HOM05D001846 ORTHO05D005785 6.0e-48 196.1 515 33.6
FAN11G2083 Fragaria x ananassa HOM05D001846 ORTHO05D005785 7.8e-48 195.7 528 37.9
RcHm_v2.0_Chr5g0052391 Rosa chinensis HOM05D001846 ORTHO05D005785 7.8e-48 195.7 448 40.0
GSVIVG01025241001 Vitis vinifera HOM05D001846 ORTHO05D005785 1.7e-47 194.5 500 33.4
Actinidia16341 Actinidia chinensis HOM05D001846 ORTHO05D005785 2.3e-47 194.1 458 34.7
PSO700G0220 Papaver somniferum HOM05D001846 ORTHO05D005785 3.0e-47 193.7 535 33.8
CsaV3_6G039320 Cucumis sativus L. HOM05D001846 ORTHO05D005785 3.3e-46 190.3 429 35.0
Lj3g0017471 Lotus japonicus HOM05D001846 ORTHO05D005785 3.3e-46 190.3 481 34.1
VMungo1127G1936 Vigna mungo HOM05D001846 ORTHO05D005785 5.6e-46 189.5 500 31.8
Haze_23151 Corylus avellana HOM05D001846 ORTHO05D005785 7.3e-46 189.1 503 34.8
Potri.009G052400 Populus trichocarpa HOM05D001846 ORTHO05D005785 2.1e-45 187.6 492 32.5
Dinv36247 Davidia involucrata HOM05D001846 ORTHO05D005785 2.8e-45 187.2 511 32.9
Phvul.011G021900 Phaseolus vulgaris HOM05D001846 ORTHO05D005785 4.8e-45 186.4 498 31.3
MELO3C014586.2 Cucumis melo HOM05D001846 ORTHO05D005785 6.2e-45 186.0 357 38.1
Glyma.12G019500 Glycine max HOM05D001846 ORTHO05D005785 3.1e-44 183.7 495 32.9
ClCG02G023130 Citrullus lanatus HOM05D001846 ORTHO05D005785 4.0e-44 183.3 437 33.2
AUR62019315 Chenopodium quinoa HOM05D001846 ORTHO05D005785 9.0e-44 182.2 517 31.9
Sabra16G0155900 Salix brachista HOM05D001846 ORTHO05D005785 1.5e-43 181.4 500 33.8
Glyma.11G093300 Glycine max HOM05D001846 ORTHO05D005785 2.6e-43 180.6 497 32.4
Potri.001G256700 Populus trichocarpa HOM05D001846 ORTHO05D005785 2.6e-43 180.6 498 31.7
CiPaw.14G118000 Carya illinoinensis HOM05D001846 ORTHO05D005785 4.4e-43 179.9 392 36.0
Ah.06g194060 Amaranthus hybridus HOM05D001846 ORTHO05D005785 9.9e-43 178.7 483 32.7
Gorai.013G251400 Gossypium raimondii HOM05D001846 ORTHO05D005785 2.9e-42 177.2 536 31.9
Nn7g36246 Nelumbo nucifera HOM05D001846 ORTHO05D005785 3.8e-42 176.8 430 34.4
Actinidia06915 Actinidia chinensis HOM05D001846 ORTHO05D005785 6.4e-42 176.0 403 35.0
FAN25G3801 Fragaria x ananassa HOM05D001846 ORTHO05D005785 1.1e-41 175.3 441 34.2
Sc16g0011440 Simmondsia chinensis HOM05D001846 ORTHO05D005785 1.1e-41 175.3 492 32.7
TAR369G0720 Trochodendron aralioides HOM05D001846 ORTHO05D005785 3.2e-41 173.7 500 32.6
vmacro04149 Vaccinium macrocarpon HOM05D001846 ORTHO05D005785 7.1e-41 172.6 464 39.2
Hma1.2p1_1313F.1_g274970 Hydrangea macrophylla HOM05D001846 ORTHO05D005785 2.1e-40 171.0 496 31.0
AUR62000135 Chenopodium quinoa HOM05D001846 ORTHO05D005785 4.6e-40 169.9 516 30.6
Lj3g0008415 Lotus japonicus HOM05D001846 ORTHO05D005785 7.8e-40 169.1 434 35.7
Lj3g0026618 Lotus japonicus HOM05D001846 ORTHO05D005785 7.8e-40 169.1 434 35.7
MBI04_g43760_MAGBIO Magnolia biondii HOM05D001846 ORTHO05D005785 7.8e-40 169.1 365 35.9
Aqoxy2G00165 Aquilegia oxysepala HOM05D001846 ORTHO05D005785 1.7e-39 167.9 513 30.6
Dinv22169 Davidia involucrata HOM05D001846 ORTHO05D005785 1.7e-39 167.9 451 33.5
Lsat_1_v5_gn_6_25301 Lactuca sativa HOM05D001846 ORTHO05D005785 3.9e-39 166.8 414 33.1
EL10Ac4g10235 Beta vulgaris HOM05D001846 ORTHO05D005785 1.6e-37 161.4 487 30.6
Rhsim13G0220400 Rhododendron simsii HOM05D001846 ORTHO05D005785 8.1e-37 159.1 454 38.5
ECA233G5307 Erigeron canadensis HOM05D001846 ORTHO05D005785 1.4e-36 158.3 402 32.6
Sed0016770 Sechium edule HOM05D001846 ORTHO05D005785 2.4e-36 157.5 374 34.5
HanXRQChr13g0401091 Helianthus annuus HOM05D001846 ORTHO05D005785 2.0e-35 154.5 343 35.9
Lalb_Chr19g0139851 Lupinus albus HOM05D001846 ORTHO05D005785 2.6e-35 154.1 481 32.4
SGA_v2.0_scaffold8G04581 Striga asiatica HOM05D001846 ORTHO05D005785 4.5e-35 153.3 410 32.0
Ca_18965_v3 Cicer arietinum L. HOM05D001846 ORTHO05D005785 5.8e-35 152.9 419 33.7
Medtr4g077160 Medicago truncatula HOM05D001846 ORTHO05D005785 1.7e-34 151.4 495 32.9
Migut.D00610 Erythranthe guttata HOM05D001846 ORTHO05D005785 1.9e-33 147.9 338 36.1
MSTRG.17597 Avicennia marina HOM05D001846 ORTHO05D005785 7.1e-33 146.0 297 34.3
Cc01_g04530 Coffea canephora HOM05D001846 ORTHO05D005785 7.1e-33 146.0 406 31.8
arahy.Tifrunner.gnm1.ann1.8PYD8T Arachis hypogaea HOM05D001846 ORTHO05D005785 6.0e-32 142.9 409 32.5
COL.COLO4_06126 Corchorus olitorius HOM05D001846 ORTHO05D005785 1.1e-30 138.7 332 33.7
Psat7g170880 Pisum sativum HOM05D001846 ORTHO05D005785 1.1e-30 138.7 403 33.0
arahy.Tifrunner.gnm1.ann1.563I02 Arachis hypogaea HOM05D001846 ORTHO05D005785 9.6e-30 135.6 412 31.6
CAN.G71.16 Capsicum annuum HOM05D001846 ORTHO05D005785 1.3e-29 135.2 371 31.5
Solyc11g065630.3 Solanum lycopersicum HOM05D001846 ORTHO05D005785 1.3e-29 135.2 388 31.2
Sopen11g025350 Solanum pennellii HOM05D001846 ORTHO05D005785 1.3e-29 135.2 285 35.4
Oeu026419.1 Olea europaea HOM05D001846 ORTHO05D005785 2.1e-29 134.4 470 34.3
Lj1A326G19 Lonicera japonica HOM05D001846 ORTHO05D005785 1.1e-28 132.1 407 30.0
Oeu016678.1 Olea europaea HOM05D001846 ORTHO05D005785 1.8e-28 131.3 290 33.4
SalBow1G1572 Salvia bowleyana HOM05D001846 ORTHO05D005785 9.0e-28 129.0 356 30.1
THA.LOC104811173 Tarenaya hassleriana HOM05D001846 ORTHO05D005785 1.2e-27 128.6 496 29.4
ATR0332G095 Amborella trichopoda HOM05D001846 ORTHO05D005785 1.5e-27 128.3 472 26.7
CDE05G0547 Ceratophyllum demersum HOM05D001846 ORTHO05D005785 2.0e-27 127.9 421 29.2
DCAR_023761 Daucus carota HOM05D001846 ORTHO05D005785 5.8e-27 126.3 391 31.5
MSTRG.12465 Avicennia marina HOM05D001846 ORTHO05D005785 3.8e-26 123.6 401 29.9
HanXRQChr02g0051491 Helianthus annuus HOM05D001846 ORTHO05D005785 8.4e-26 122.5 363 31.1
FAN25G3220 Fragaria x ananassa HOM05D001846 ORTHO05D005785 2.5e-25 120.9 269 36.4
Nitab4.5_0002741g0070 Nicotiana tabacum HOM05D001846 ORTHO05D005785 4.2e-25 120.2 406 30.5
MBI04_g45701_MAGBIO Magnolia biondii HOM05D001846 ORTHO05D005785 3.0e-23 114.0 180 43.9
Gohir.A09G113600 Gossypium hirsutum HOM05D001846 ORTHO05D005785 1.1e-20 105.5 228 32.5
SEGI_01920 Sequoiadendron giganteum HOM05D001846 ORTHO05D005785 3.1e-20 104.0 421 26.8
Nitab4.5_0007154g0020 Nicotiana tabacum HOM05D001846 ORTHO05D005785 6.9e-20 102.8 220 38.2
Peaxi162Scf00004g02629 Petunia axillaris HOM05D001846 ORTHO05D005785 1.0e-18 99.0 233 35.6
MSTRG.21370 Avicennia marina HOM05D001846 ORTHO05D005785 2.9e-18 97.4 86 53.5
Actinidia26798 Actinidia chinensis HOM05D001846 ORTHO05D005785 1.4e-17 95.1 173 39.3
CDE05G1816 Ceratophyllum demersum HOM05D001846 ORTHO05D005785 6.1e-16 89.7 89 46.1
CDE05G3609 Ceratophyllum demersum HOM05D001846 ORTHO05D005785 3.9e-15 87.0 268 31.7
Os03g0216900 Oryza sativa ssp. japonica HOM05D001846 ORTHO05D005785 5.7e-14 83.2 193 31.6
Zm00001eb400050 Zea mays HOM05D001846 ORTHO05D005785 7.4e-14 82.8 364 24.2
Gohir.A09G113700 Gossypium hirsutum HOM05D001846 ORTHO05D005785 1.6e-13 81.6 144 43.8
PGSC0003DMG400010305 Solanum tuberosum HOM05D001846 ORTHO05D005785 1.6e-13 81.6 123 39.0
SGA_v2.0_scaffold247G44890 Striga asiatica HOM05D001846 ORTHO05D005785 2.8e-13 80.9 64 56.2
Zm00001eb008800 Zea mays HOM05D001846 ORTHO05D005785 3.1e-12 77.4 371 24.0
MSTRG.18433 Avicennia marina HOM05D001846 ORTHO05D005785 1.2e-11 75.5 272 27.2
HPP92_007908 Vanilla planifolia HOM05D001846 ORTHO05D005785 5.0e-10 70.1 240 27.5
Zm00001eb393780 Zea mays HOM05D001846 ORTHO05D005785 4.6e-08 63.5 56 51.8
AL7G40510 Arabidopsis lyrata HOM05D001846 ORTHO05D005785 7.9e-08 62.8 89 50.6
Mapoly0001s0089 Marchantia polymorpha HOM05D001846 ORTHO05D005785 2.5e-06 57.8 84 33.3
SEGI_28173 Sequoiadendron giganteum HOM05D001846 ORTHO05D005785 2.5e-06 57.8 158 27.2


User provided reference genes

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