Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C03p89430 Brassica napus HOM05D005311 ORTHO05D006160 3.4e-110 401.7 215 100.0
BolC3t21257H Brassica oleracea HOM05D005311 ORTHO05D006160 7.2e-108 394.0 215 94.4
BraA08t32371Z Brassica rapa HOM05D005311 ORTHO05D006160 6.3e-104 380.9 216 91.7
A08p03390 Brassica napus HOM05D005311 ORTHO05D006160 8.2e-104 380.6 216 92.1
Sp1g36880 Schrenkiella parvula HOM05D005311 ORTHO05D006160 5.9e-94 347.8 215 86.0
Thhalv10011774m.g Eutrema salsugineum HOM05D005311 ORTHO05D006160 5.0e-93 344.7 214 84.6
AL1G57590 Arabidopsis lyrata HOM05D005311 ORTHO05D006160 3.2e-92 342.0 214 85.0
AT1G50020 Arabidopsis thaliana HOM05D005311 ORTHO05D006160 6.7e-90 334.3 214 84.1
BcaB07g33454 Brassica carinata HOM05D005311 ORTHO05D006160 9.7e-89 330.5 216 83.8
Carub.0001s3920 Capsella rubella HOM05D005311 ORTHO05D006160 1.3e-88 330.1 214 82.7
CARHR040130 Cardamine hirsuta HOM05D005311 ORTHO05D006160 2.8e-88 328.9 215 81.9
A06p03410 Brassica napus HOM05D005311 ORTHO05D006160 1.1e-87 327.0 216 82.9
BraA06t23549Z Brassica rapa HOM05D005311 ORTHO05D006160 1.1e-87 327.0 216 82.9
BcaC08g43180 Brassica carinata HOM05D005311 ORTHO05D006160 2.4e-87 325.9 216 82.4
BolC6t35609H Brassica oleracea HOM05D005311 ORTHO05D006160 2.4e-87 325.9 216 82.4
C06p04800 Brassica napus HOM05D005311 ORTHO05D006160 4.1e-87 325.1 216 82.4
THA.LOC104815219 Tarenaya hassleriana HOM05D005311 ORTHO05D006160 4.1e-71 271.9 213 68.1
Aa31LG10G4090 Aethionema arabicum HOM05D002370 ORTHO05D003878 8.0e-67 257.7 152 84.9
BcaB04g17278 Brassica carinata HOM05D005311 ORTHO05D006160 3.0e-66 255.8 144 92.4
Gohir.A03G180600 Gossypium hirsutum HOM05D005311 ORTHO05D006160 1.7e-53 213.4 218 55.0
Gohir.D02G203104 Gossypium hirsutum HOM05D005311 ORTHO05D006160 2.3e-53 213.0 218 55.0
Gohir.D12G019000 Gossypium hirsutum HOM05D005311 ORTHO05D006160 1.5e-52 210.3 215 55.3
Gorai.008G019300 Gossypium raimondii HOM05D005311 ORTHO05D006160 2.5e-52 209.5 215 55.3
Manes.07G056400 Manihot esculenta HOM05D005311 ORTHO05D006160 5.6e-52 208.4 224 54.9
COL.COLO4_32478 Corchorus olitorius HOM05D005311 ORTHO05D006160 7.3e-52 208.0 219 53.4
Gohir.A12G018400 Gossypium hirsutum HOM05D005311 ORTHO05D006160 1.2e-51 207.2 215 54.4
Gorai.005G229500 Gossypium raimondii HOM05D005311 ORTHO05D006160 1.2e-51 207.2 218 53.7
Thecc.02G120600 Theobroma cacao HOM05D005311 ORTHO05D006160 8.9e-50 201.1 218 52.3
Atru.chr5.2262 Acer truncatum HOM05D005311 ORTHO05D006160 1.2e-49 200.7 221 54.8
MD05G1106900 Malus domestica HOM05D005311 ORTHO05D006160 1.2e-49 200.7 230 50.4
TAR376G1236 Trochodendron aralioides HOM05D000442 ORTHO05D006160 1.2e-49 200.7 222 52.3
TWI14G0308 Tripterygium wilfordii HOM05D005311 ORTHO05D006160 4.4e-49 198.7 167 63.5
GSVIVG01037044001 Vitis vinifera HOM05D005311 ORTHO05D006160 5.8e-49 198.4 166 65.7
MELO3C018026.2 Cucumis melo HOM05D005311 ORTHO05D006160 9.8e-49 197.6 224 52.7
Actinidia00352 Actinidia chinensis HOM05D005311 ORTHO05D006160 1.3e-48 197.2 219 52.5
ATR0767G087 Amborella trichopoda HOM05D005311 ORTHO05D006160 1.3e-48 197.2 183 57.9
CANSAT25G3378 Cannabis sativa HOM05D005311 ORTHO05D006160 1.3e-48 197.2 165 61.8
Duzib052G0370 Durio zibethinus HOM05D005311 ORTHO05D006160 2.2e-48 196.4 217 50.7
Rhsim11G0150000 Rhododendron simsii HOM05D005311 ORTHO05D006160 2.2e-48 196.4 214 52.3
Potri.009G084800 Populus trichocarpa HOM05D005311 ORTHO05D006160 2.9e-48 196.1 173 61.3
TWI59G0049 Tripterygium wilfordii HOM05D005311 ORTHO05D006160 2.9e-48 196.1 212 54.2
Medtr1g105970 Medicago truncatula HOM05D005311 ORTHO05D006160 1.1e-47 194.1 171 61.4
Sed0009957 Sechium edule HOM05D005311 ORTHO05D006160 1.1e-47 194.1 224 52.2
CiPaw.05G021200 Carya illinoinensis HOM05D005311 ORTHO05D006160 1.9e-47 193.4 229 52.4
Sc18g0007330 Simmondsia chinensis HOM05D005311 ORTHO05D006160 1.9e-47 193.4 216 50.0
CSS0009611 Camellia sinensis var. sinensis HOM05D005311 ORTHO05D006160 2.4e-47 193.0 159 64.2
MD10G1111900 Malus domestica HOM05D005311 ORTHO05D006160 3.2e-47 192.6 181 59.1
Nn6g32054 Nelumbo nucifera HOM05D005311 ORTHO05D006160 3.2e-47 192.6 179 58.7
Cc02_g20120 Coffea canephora HOM05D005311 ORTHO05D006160 4.1e-47 192.2 166 61.4
ClCG10G010010 Citrullus lanatus HOM05D005311 ORTHO05D006160 5.4e-47 191.8 158 63.9
MSTRG.16668 Avicennia marina HOM05D005311 ORTHO05D006160 9.2e-47 191.0 166 62.0
Potri.001G289400 Populus trichocarpa HOM05D005311 ORTHO05D006160 9.2e-47 191.0 224 50.9
Phvul.007G047500 Phaseolus vulgaris HOM05D005311 ORTHO05D006160 1.2e-46 190.7 162 62.3
Ciclev10029272m.g Citrus clementina HOM05D005311 ORTHO05D006160 2.0e-46 189.9 158 63.9
Glyma.10G255200 Glycine max HOM05D005311 ORTHO05D006160 2.7e-46 189.5 160 62.5
Lj5g0014269 Lotus japonicus HOM05D005311 ORTHO05D006160 2.7e-46 189.5 167 59.9
Aqoxy5G01939 Aquilegia oxysepala HOM05D005311 ORTHO05D006160 4.6e-46 188.7 182 58.2
Lalb_Chr16g0376301 Lupinus albus HOM05D005311 ORTHO05D006160 4.6e-46 188.7 160 63.1
CsaV3_4G000050 Cucumis sativus L. HOM05D005311 ORTHO05D006160 7.8e-46 188.0 155 63.9
VMungo0720G0066 Vigna mungo HOM05D005311 ORTHO05D006160 7.8e-46 188.0 155 64.5
Ca_11020_v3 Cicer arietinum L. HOM05D005311 ORTHO05D006160 1.0e-45 187.6 165 61.2
Lsat_1_v5_gn_7_84560 Lactuca sativa HOM05D005311 ORTHO05D006160 1.0e-45 187.6 175 57.7
arahy.Tifrunner.gnm1.ann1.QK2693 Arachis hypogaea HOM05D005311 ORTHO05D006160 1.3e-45 187.2 160 61.9
Eucgr.I02500 Eucalyptus grandis HOM05D005311 ORTHO05D006160 1.3e-45 187.2 163 61.3
Actinidia02445 Actinidia chinensis HOM05D005311 ORTHO05D006160 1.7e-45 186.8 220 50.5
TAR625G0307 Trochodendron aralioides HOM05D005311 ORTHO05D006160 1.7e-45 186.8 163 60.7
TAR628G1269 Trochodendron aralioides HOM05D005311 ORTHO05D006160 1.7e-45 186.8 166 60.8
FvH4_2g03130 Fragaria vesca HOM05D005311 ORTHO05D006160 2.3e-45 186.4 159 62.9
arahy.Tifrunner.gnm1.ann1.KVB0K0 Arachis hypogaea HOM05D005311 ORTHO05D006160 5.0e-45 185.3 233 49.4
Migut.B00474 Erythranthe guttata HOM05D005311 ORTHO05D006160 5.0e-45 185.3 168 60.7
SalBow6G1857 Salvia bowleyana HOM05D005311 ORTHO05D006160 5.0e-45 185.3 168 59.5
Hund00418 Selenicereus undatus HOM05D005311 ORTHO05D006160 5.0e-45 185.3 157 61.1
Cpa.g.sc106.28 Carica papaya HOM05D005311 ORTHO05D006160 6.6e-45 184.9 267 44.2
Lsat_1_v5_gn_9_113920 Lactuca sativa HOM05D005311 ORTHO05D006160 6.6e-45 184.9 206 51.5
Nitab4.5_0000772g0050 Nicotiana tabacum HOM05D005311 ORTHO05D006160 6.6e-45 184.9 171 58.5
Sopen01g049100 Solanum pennellii HOM05D005311 ORTHO05D006160 8.6e-45 184.5 166 57.8
Solyc01g106790.3 Solanum lycopersicum HOM05D005311 ORTHO05D006160 1.1e-44 184.1 166 57.2
Sabra16G0181000 Salix brachista HOM05D002370 ORTHO05D003878 1.5e-44 183.7 186 54.8
PGSC0003DMG400025735 Solanum tuberosum HOM05D005311 ORTHO05D006160 1.5e-44 183.7 166 57.2
ECA236G2995 Erigeron canadensis HOM05D000211 ORTHO05D002517 1.9e-44 183.3 189 55.0
Lalb_Chr21g0307981 Lupinus albus HOM05D005311 ORTHO05D006160 1.9e-44 183.3 163 60.1
Peaxi162Scf00016g03127 Petunia axillaris HOM05D005311 ORTHO05D006160 1.9e-44 183.3 171 58.5
QL11p029204 Quercus lobata HOM05D005311 ORTHO05D006160 2.5e-44 183.0 154 61.7
CAN.G606.76 Capsicum annuum HOM05D005311 ORTHO05D006160 7.3e-44 181.4 166 56.0
Glyma.20G136100 Glycine max HOM05D005311 ORTHO05D006160 7.3e-44 181.4 152 63.8
HanXRQChr15g0495651 Helianthus annuus HOM05D005311 ORTHO05D006160 9.5e-44 181.0 184 54.9
Nitab4.5_0009103g0020 Nicotiana tabacum HOM05D005311 ORTHO05D006160 9.5e-44 181.0 171 57.9
Ah.01g024570 Amaranthus hybridus HOM05D005311 ORTHO05D006160 1.2e-43 180.6 155 60.6
AUR62027028 Chenopodium quinoa HOM05D005311 ORTHO05D006160 2.8e-43 179.5 180 56.7
FAN24G0492 Fragaria x ananassa HOM05D005311 ORTHO05D006160 3.6e-43 179.1 163 60.7
FAN27G0024 Fragaria x ananassa HOM05D005311 ORTHO05D006160 3.6e-43 179.1 163 60.7
Lalb_Chr02g0144871 Lupinus albus HOM05D005311 ORTHO05D006160 3.6e-43 179.1 160 60.0
SGA_v2.0_scaffold32G12981 Striga asiatica HOM05D005311 ORTHO05D006160 4.7e-43 178.7 212 48.1
AUR62030871 Chenopodium quinoa HOM05D005311 ORTHO05D006160 8.1e-43 177.9 159 59.7
ECA240G0703 Erigeron canadensis HOM05D005311 ORTHO05D006160 1.1e-42 177.6 158 59.5
FAN20G1889 Fragaria x ananassa HOM05D005311 ORTHO05D006160 1.1e-42 177.6 217 51.2
Actinidia28002 Actinidia chinensis HOM05D004628 ORTHO05D006160 3.1e-42 176.0 173 55.5
vmacro01940 Vaccinium macrocarpon HOM05D000211 ORTHO05D002517 3.1e-42 176.0 181 54.1
FAN15G1540 Fragaria x ananassa HOM05D005311 ORTHO05D006160 8.9e-42 174.5 211 50.7
DCAR_021939 Daucus carota HOM05D005311 ORTHO05D006160 1.5e-41 173.7 155 61.3
RcHm_v2.0_Chr6g0248001 Rosa chinensis HOM05D005311 ORTHO05D006160 1.3e-40 170.6 152 61.2
PSO210G6612 Papaver somniferum HOM05D005311 ORTHO05D006160 2.2e-40 169.9 165 55.8
HanXRQChr03g0073011 Helianthus annuus HOM05D005311 ORTHO05D006160 2.9e-40 169.5 176 55.1
PSO447G0012 Papaver somniferum HOM05D005311 ORTHO05D006160 8.3e-40 167.9 168 54.2
Lj9A337G44 Lonicera japonica HOM05D005311 ORTHO05D006160 1.9e-39 166.8 155 58.1
Lj5A221T62 Lonicera japonica HOM05D005311 ORTHO05D006160 1.3e-37 160.6 145 60.7
CDE02G2678 Ceratophyllum demersum HOM05D005427 ORTHO05D006160 4.3e-36 155.6 164 49.4
GSVIVG01009264001 Vitis vinifera HOM05D005311 ORTHO05D006160 1.2e-35 154.1 153 52.3
Oeu037294.1 Olea europaea HOM05D005311 ORTHO05D006160 2.8e-35 152.9 147 57.8
unitig_61.g26039 Utricularia gibba HOM05D005311 ORTHO05D006160 3.6e-35 152.5 161 52.2
Dinv09534 Davidia involucrata HOM05D000211 ORTHO05D002517 1.5e-33 147.1 164 50.0
Zm00001eb201730 Zea mays HOM05D005311 ORTHO05D006160 1.5e-33 147.1 153 51.6
Prupe.8G151000 Prunus persica HOM05D005311 ORTHO05D006160 2.0e-33 146.7 143 61.5
Os11g0549900 Oryza sativa ssp. japonica HOM05D005311 ORTHO05D006160 3.8e-32 142.5 145 53.8
unitig_60.g25463 Utricularia gibba HOM05D005311 ORTHO05D006160 1.1e-31 141.0 151 49.7
Duzib132G0391 Durio zibethinus HOM05D005311 ORTHO05D006160 3.0e-29 132.9 209 42.6
Sabra09G0065400 Salix brachista HOM05D000308 ORTHO05D002517 6.6e-29 131.7 114 64.9
TPR.G21150 Trifolium pratense HOM05D005311 ORTHO05D006160 1.1e-28 131.0 128 57.0
EL10Ac9g22172 Beta vulgaris HOM05D005311 ORTHO05D006160 3.3e-28 129.4 125 58.4
Psat6g210680 Pisum sativum HOM05D005311 ORTHO05D006160 1.6e-27 127.1 124 56.5
Mapoly0159s0003 Marchantia polymorpha HOM05D005311 ORTHO05D006160 2.8e-27 126.3 192 42.7
Pp3c9_20640 Physcomitrium patens HOM05D005311 ORTHO05D006160 2.8e-27 126.3 174 44.3
arahy.Tifrunner.gnm1.ann1.YXS8EF Arachis hypogaea HOM05D005311 ORTHO05D006160 2.4e-26 123.2 146 51.4
SMO118G0105 Selaginella moellendorffii HOM05D005311 ORTHO05D006160 4.0e-26 122.5 167 44.9
AagrBONN_evm.TU.Sc2ySwM_340.346 Anthoceros agrestis HOM05D005311 ORTHO05D006160 3.8e-24 115.9 163 39.9
Oeu025305.1 Olea europaea HOM05D005311 ORTHO05D006160 1.4e-23 114.0 111 56.8
CDE04G0288 Ceratophyllum demersum HOM05D005311 ORTHO05D006160 4.2e-23 112.5 81 65.4
PGR142G3492 Punica granatum HOM05D005311 ORTHO05D006160 6.0e-22 108.6 158 44.3
Oeu037691.1 Olea europaea HOM05D005311 ORTHO05D006160 2.1e-19 100.1 97 57.7
arahy.Tifrunner.gnm1.ann1.YSC4AN Arachis hypogaea HOM05D005311 ORTHO05D006160 1.4e-18 97.4 146 42.5
CARHR113150 Cardamine hirsuta HOM05D005311 ORTHO05D006160 3.8e-16 89.4 53 86.8
arahy.Tifrunner.gnm1.ann1.6ZTX4G Arachis hypogaea HOM05D005311 ORTHO05D006160 6.4e-16 88.6 148 39.9
TAR365G0893 Trochodendron aralioides HOM05D005311 ORTHO05D006160 1.6e-14 84.0 85 55.3
CSS0025480 Camellia sinensis var. sinensis HOM05D005311 ORTHO05D006160 3.0e-13 79.7 150 42.0
Haze_10287 Corylus avellana HOM05D005311 ORTHO05D006160 6.7e-13 78.6 82 57.3
CDE02G0336 Ceratophyllum demersum HOM05D005311 ORTHO05D006160 1.1e-12 77.8 89 48.3
CBR_g12748 Chara braunii HOM05D000019 ORTHO05D000048 1.5e-12 77.4 71 52.1
Cfa004693 Carpinus fangiana HOM05D005311 ORTHO05D006160 5.6e-12 75.5 81 58.0
HPP92_006035 Vanilla planifolia HOM05D005311 ORTHO05D006160 7.4e-12 75.1 114 43.9
vmacro22259 Vaccinium macrocarpon HOM05D005311 ORTHO05D006160 9.6e-12 74.7 93 49.5
Cre14.g614000 Chlamydomonas reinhardtii HOM05D005311 ORTHO05D006160 1.3e-11 74.3 83 45.8
Rhsim05G0093200 Rhododendron simsii HOM05D005311 ORTHO05D006160 2.1e-11 73.6 200 33.5
SGA_v2.0_scaffold225G43064 Striga asiatica HOM05D005311 ORTHO05D006160 4.8e-11 72.4 83 54.2
Dinv44912 Davidia involucrata HOM05D005311 ORTHO05D006160 4.0e-10 69.3 88 47.7
SEGI_31449 Sequoiadendron giganteum HOM05D005311 ORTHO05D006160 2.0e-09 67.0 118 43.2
arahy.Tifrunner.gnm1.ann1.HG6PX3 Arachis hypogaea HOM05D005311 ORTHO05D006160 1.1e-07 61.2 137 35.0
MCO01G504 Micromonas commoda HOM05D005311 ORTHO05D006160 3.2e-07 59.7 172 30.8
Dinv16067 Davidia involucrata HOM05D005311 ORTHO05D006160 5.5e-07 58.9 118 36.4
CSS0010436 Camellia sinensis var. sinensis HOM05D005311 ORTHO05D006160 2.1e-06 57.0 34 73.5
arahy.Tifrunner.gnm1.ann1.TC5M0Q Arachis hypogaea HOM05D005311 ORTHO05D006160 3.5e-06 56.2 131 33.6


User provided reference genes

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