Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C03p89180 Brassica napus HOM05D003161 ORTHO05D101689 2.1e-42 175.3 86 100.0
BcaB06g25562 Brassica carinata HOM05D003161 ORTHO05D005173 3.0e-09 65.1 43 74.4
BcaC05g29306 Brassica carinata HOM05D003161 ORTHO05D005173 5.2e-09 64.3 43 74.4
BcaC09g48184 Brassica carinata HOM05D003161 ORTHO05D005173 5.2e-09 64.3 43 74.4
C05p55950 Brassica napus HOM05D003161 ORTHO05D005173 5.2e-09 64.3 43 74.4
BolC1t05277H Brassica oleracea HOM05D003161 ORTHO05D005173 5.2e-09 64.3 43 74.4
BolC5t34262H Brassica oleracea HOM05D003161 ORTHO05D005173 5.2e-09 64.3 43 74.4
BraA01t04149Z Brassica rapa HOM05D003161 ORTHO05D005173 5.2e-09 64.3 43 74.4
Thhalv10019877m.g Eutrema salsugineum HOM05D003161 ORTHO05D005173 5.2e-09 64.3 43 74.4
Sp3g10190 Schrenkiella parvula HOM05D003161 ORTHO05D005173 8.9e-09 63.5 43 74.4
A05p37390 Brassica napus HOM05D003161 ORTHO05D005173 1.2e-08 63.2 43 72.1
BraA05t22538Z Brassica rapa HOM05D003161 ORTHO05D005173 1.2e-08 63.2 43 72.1
AT3G11964 Arabidopsis thaliana HOM05D003161 ORTHO05D005173 2.6e-08 62.0 62 56.5
Carub.0003s1130 Capsella rubella HOM05D003161 ORTHO05D005173 2.6e-08 62.0 43 72.1
BcaB04g21101 Brassica carinata HOM05D003161 ORTHO05D005173 3.4e-08 61.6 43 72.1
Aa31sc238G10 Aethionema arabicum HOM05D003161 ORTHO05D005173 5.7e-08 60.8 43 69.8
A01p04910 Brassica napus HOM05D002892 ORTHO05D003224 8.3e-07 57.0 43 67.4
BraA01t00473Z Brassica rapa HOM05D002892 ORTHO05D003224 8.3e-07 57.0 43 67.4
ClCG04G001230 Citrullus lanatus HOM05D003161 ORTHO05D005173 8.3e-07 57.0 60 50.0
CARHR086520 Cardamine hirsuta HOM05D003161 ORTHO05D005173 1.1e-06 56.6 43 65.1
BcaC09g52141 Brassica carinata HOM05D002892 ORTHO05D003224 1.8e-06 55.8 45 66.7
BcaC09g52146 Brassica carinata HOM05D002892 ORTHO05D003224 1.8e-06 55.8 45 66.7
C01p05310 Brassica napus HOM05D002892 ORTHO05D003224 1.8e-06 55.8 45 66.7
BolC1t00511H Brassica oleracea HOM05D002892 ORTHO05D003224 1.8e-06 55.8 45 66.7
Carub.0007s0714 Capsella rubella HOM05D002892 ORTHO05D003224 1.8e-06 55.8 45 66.7
CARHR241390 Cardamine hirsuta HOM05D002892 ORTHO05D003224 1.8e-06 55.8 45 66.7
Thhalv10025972m.g Eutrema salsugineum HOM05D002892 ORTHO05D003224 1.8e-06 55.8 45 66.7
Sp7g31050 Schrenkiella parvula HOM05D002892 ORTHO05D003224 1.8e-06 55.8 49 63.3
Ciclev10013867m.g Citrus clementina HOM05D003161 ORTHO05D005173 2.4e-06 55.5 43 60.5
AL3G23570 Arabidopsis lyrata HOM05D003161 ORTHO05D005173 3.1e-06 55.1 43 62.8
A03p61920 Brassica napus HOM05D000526 ORTHO05D007025 3.1e-06 55.1 43 65.1
QL07p025530 Quercus lobata HOM05D003161 ORTHO05D005173 4.1e-06 54.7 42 59.5
Aa31sc807G10 Aethionema arabicum HOM05D002892 ORTHO05D003224 5.4e-06 54.3 45 64.4
CANSAT64G2741 Cannabis sativa HOM05D003161 ORTHO05D005173 5.4e-06 54.3 50 54.0
CDE02G2929 Ceratophyllum demersum HOM05D003161 ORTHO05D005173 5.4e-06 54.3 61 47.5
Os07g0203300 Oryza sativa ssp. japonica HOM05D003161 ORTHO05D005173 5.4e-06 54.3 60 48.3
BcaNung02166 Brassica carinata HOM05D002892 ORTHO05D003224 7.0e-06 53.9 45 64.4
C07p59580 Brassica napus HOM05D000526 ORTHO05D000956 7.0e-06 53.9 49 61.2
BraA03t15231Z Brassica rapa HOM05D000526 ORTHO05D000956 7.0e-06 53.9 42 66.7
Cpa.g.sc49.11 Carica papaya HOM05D002892 ORTHO05D003224 7.0e-06 53.9 45 62.2
TWI74G1605 Tripterygium wilfordii HOM05D003161 ORTHO05D005173 7.0e-06 53.9 43 58.1
AL7G18220 Arabidopsis lyrata HOM05D002892 ORTHO05D003224 9.2e-06 53.5 45 64.4
AT4G33350 Arabidopsis thaliana HOM05D002892 ORTHO05D003224 9.2e-06 53.5 45 64.4
MELO3C008994.2 Cucumis melo HOM05D003161 ORTHO05D005173 9.2e-06 53.5 60 45.0
Oeu046733.1 Olea europaea HOM05D003161 ORTHO05D005173 9.2e-06 53.5 37 70.3


User provided reference genes

Program Settings