Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C03p89150 Brassica napus HOM05D006545 ORTHO05D007985 1.3e-49 199.5 105 100.0
BcaC01g01182 Brassica carinata HOM05D006545 ORTHO05D007985 3.7e-49 198.0 105 99.0
A03p59030 Brassica napus HOM05D006545 ORTHO05D007985 1.9e-29 132.5 94 78.7
CARHR237610 Cardamine hirsuta HOM05D006545 ORTHO05D007985 8.0e-28 127.1 75 92.0
Sp7g27510 Schrenkiella parvula HOM05D006545 ORTHO05D007985 1.8e-27 125.9 75 92.0
AL7G22570 Arabidopsis lyrata HOM05D006545 ORTHO05D007985 3.0e-27 125.2 75 90.7
Carub.0007s1077 Capsella rubella HOM05D006545 ORTHO05D007985 3.0e-27 125.2 75 90.7
AT4G29735 Arabidopsis thaliana HOM05D006545 ORTHO05D007985 6.7e-27 124.0 75 89.3
Thhalv10026717m.g Eutrema salsugineum HOM05D006545 ORTHO05D007985 1.1e-26 123.2 75 90.7
A01p08390 Brassica napus HOM05D000125 ORTHO05D000120 1.5e-26 122.9 75 89.3
BraA01t00787Z Brassica rapa HOM05D000125 ORTHO05D000120 1.5e-26 122.9 75 89.3
BcaNung00485 Brassica carinata HOM05D006545 ORTHO05D007985 2.0e-26 122.5 75 89.3
Aa31LG2G20830 Aethionema arabicum HOM05D006545 ORTHO05D007985 2.6e-26 122.1 75 88.0
THA.LOC104820022 Tarenaya hassleriana HOM05D006545 ORTHO05D007985 1.7e-25 119.4 75 88.0
THA.LOC104814622 Tarenaya hassleriana HOM05D006545 ORTHO05D007985 2.8e-25 118.6 75 85.3
Actinidia29903 Actinidia chinensis HOM05D000085 ORTHO05D001460 2.4e-24 115.5 87 73.6
BcaC09g51752 Brassica carinata HOM05D006545 ORTHO05D007985 2.4e-24 115.5 75 82.7
BraA03t14963Z Brassica rapa HOM05D006545 ORTHO05D007985 7.7e-23 110.5 97 70.1
Lj4g0002489 Lotus japonicus HOM05D006545 ORTHO05D007985 1.0e-22 110.2 74 82.4
Psat4g015120 Pisum sativum HOM05D006545 ORTHO05D007985 1.3e-22 109.8 75 80.0
MSTRG.10562 Avicennia marina HOM05D006545 ORTHO05D007985 1.7e-22 109.4 77 75.3
Dinv42321 Davidia involucrata HOM05D006545 ORTHO05D007985 1.7e-22 109.4 76 77.6
Solyc12g008860.3 Solanum lycopersicum HOM05D006545 ORTHO05D007985 1.7e-22 109.4 89 70.8
Cfa003081 Carpinus fangiana HOM05D000085 ORTHO05D001460 2.9e-22 108.6 74 79.7
Ciclev10010087m.g Citrus clementina HOM05D006545 ORTHO05D007985 2.9e-22 108.6 74 81.1
Sopen12g003790 Solanum pennellii HOM05D006545 ORTHO05D007985 2.9e-22 108.6 77 76.6
PGSC0003DMG400000279 Solanum tuberosum HOM05D006545 ORTHO05D007985 2.9e-22 108.6 76 78.9
BolC7t46179H Brassica oleracea HOM05D006545 ORTHO05D007985 3.8e-22 108.2 101 67.3
DCAR_028856 Daucus carota HOM05D006545 ORTHO05D007985 3.8e-22 108.2 74 77.0
DCAR_032235 Daucus carota HOM05D006545 ORTHO05D007985 3.8e-22 108.2 74 77.0
Glyma.13G104200 Glycine max HOM05D006545 ORTHO05D007985 3.8e-22 108.2 74 81.1
Glyma.17G054900 Glycine max HOM05D006545 ORTHO05D007985 3.8e-22 108.2 74 81.1
Phvul.003G136800 Phaseolus vulgaris HOM05D006545 ORTHO05D007985 5.0e-22 107.8 74 79.7
Sc18g0002090 Simmondsia chinensis HOM05D000085 ORTHO05D001460 5.0e-22 107.8 75 74.7
unitig_85.g27258 Utricularia gibba HOM05D006545 ORTHO05D007985 5.0e-22 107.8 76 75.0
Dinv36770 Davidia involucrata HOM05D006545 ORTHO05D007985 6.5e-22 107.5 76 77.6
Migut.L01494 Erythranthe guttata HOM05D006545 ORTHO05D007985 8.5e-22 107.1 77 74.0
Lsat_1_v5_gn_7_37040 Lactuca sativa HOM05D006545 ORTHO05D007985 8.5e-22 107.1 77 74.0
vmacro06292 Vaccinium macrocarpon HOM05D006545 ORTHO05D007985 1.1e-21 106.7 77 72.7
C07p57080 Brassica napus HOM05D006545 ORTHO05D007985 1.5e-21 106.3 64 92.2
PGR102G1056 Punica granatum HOM05D006545 ORTHO05D007985 1.5e-21 106.3 74 79.7
C01p09720 Brassica napus HOM05D006545 ORTHO05D007985 1.9e-21 105.9 97 67.0
Nitab4.5_0000540g0270 Nicotiana tabacum HOM05D006545 ORTHO05D007985 1.9e-21 105.9 77 72.7
Nitab4.5_0008523g0040 Nicotiana tabacum HOM05D006545 ORTHO05D007985 1.9e-21 105.9 77 74.0
CiPaw.04G149100 Carya illinoinensis HOM05D006545 ORTHO05D007985 2.5e-21 105.5 74 79.7
HanXRQChr12g0363181 Helianthus annuus HOM05D006545 ORTHO05D007985 2.5e-21 105.5 77 75.3
Potri.004G215200 Populus trichocarpa HOM05D006545 ORTHO05D007985 2.5e-21 105.5 75 74.7
TAR383G1000 Trochodendron aralioides HOM05D006545 ORTHO05D007985 2.5e-21 105.5 75 76.0
GSVIVG01015199001 Vitis vinifera HOM05D006545 ORTHO05D007985 2.5e-21 105.5 75 76.0
CiPaw.03G215100 Carya illinoinensis HOM05D006545 ORTHO05D007985 3.2e-21 105.1 74 78.4
MELO3C015473.2 Cucumis melo HOM05D006545 ORTHO05D007985 3.2e-21 105.1 77 68.8
Lalb_Chr07g0180851 Lupinus albus HOM05D006545 ORTHO05D007985 3.2e-21 105.1 75 77.3
Medtr4g126270 Medicago truncatula HOM05D000085 ORTHO05D001460 3.2e-21 105.1 74 75.7
Atru.chr7.1592 Acer truncatum HOM05D006545 ORTHO05D007985 4.2e-21 104.8 74 75.7
Nitab4.5_0006552g0040 Nicotiana tabacum HOM05D006545 ORTHO05D007985 4.2e-21 104.8 95 62.1
BcaC09g52224 Brassica carinata HOM05D006545 ORTHO05D007985 5.5e-21 104.4 64 89.1
CsaV3_1G040450 Cucumis sativus L. HOM05D006545 ORTHO05D007985 5.5e-21 104.4 74 71.6
CANSAT56G1499 Cannabis sativa HOM05D006545 ORTHO05D007985 7.2e-21 104.0 74 75.7
CANSAT56G4473 Cannabis sativa HOM05D006545 ORTHO05D007985 7.2e-21 104.0 74 75.7
Ca_21279_v3 Cicer arietinum L. HOM05D005251 ORTHO05D006680 7.2e-21 104.0 74 75.7
Actinidia19138 Actinidia chinensis HOM05D006545 ORTHO05D007985 9.4e-21 103.6 77 74.0
Os06g0567000 Oryza sativa ssp. japonica HOM05D006545 ORTHO05D007985 9.4e-21 103.6 75 73.3
TPR.G9474 Trifolium pratense HOM05D000085 ORTHO05D001460 9.4e-21 103.6 71 78.9
QL02p062521 Quercus lobata HOM05D006545 ORTHO05D007985 1.2e-20 103.2 73 79.5
EL10Ac8g19212 Beta vulgaris HOM05D006545 ORTHO05D007985 1.6e-20 102.8 75 70.7
ECA240G1755 Erigeron canadensis HOM05D006545 ORTHO05D007985 1.6e-20 102.8 78 69.2
Lalb_Chr13g0299701 Lupinus albus HOM05D006545 ORTHO05D007985 1.6e-20 102.8 75 73.3
AUR62033964 Chenopodium quinoa HOM05D006545 ORTHO05D007985 2.1e-20 102.4 77 68.8
RcHm_v2.0_Chr2g0093401 Rosa chinensis HOM05D006545 ORTHO05D007985 2.1e-20 102.4 74 75.7
ClCG03G015590 Citrullus lanatus HOM05D006545 ORTHO05D007985 2.7e-20 102.1 74 70.3
ATR0749G052 Amborella trichopoda HOM05D006545 ORTHO05D007985 3.6e-20 101.7 76 69.7
arahy.Tifrunner.gnm1.ann1.MQ59WG Arachis hypogaea HOM05D000085 ORTHO05D001460 3.6e-20 101.7 74 74.3
Eucgr.C00895 Eucalyptus grandis HOM05D006545 ORTHO05D007985 3.6e-20 101.7 77 70.1
Gohir.A05G030100 Gossypium hirsutum HOM05D006545 ORTHO05D007985 3.6e-20 101.7 75 74.7
Gohir.D05G031500 Gossypium hirsutum HOM05D006545 ORTHO05D007985 3.6e-20 101.7 75 74.7
Gorai.009G031700 Gossypium raimondii HOM05D006545 ORTHO05D007985 3.6e-20 101.7 75 74.7
Thecc.09G088900 Theobroma cacao HOM05D006545 ORTHO05D007985 3.6e-20 101.7 75 74.7
TWI34G0024 Tripterygium wilfordii HOM05D006545 ORTHO05D007985 3.6e-20 101.7 74 75.7
arahy.Tifrunner.gnm1.ann1.CH1R66 Arachis hypogaea HOM05D006545 ORTHO05D007985 4.7e-20 101.3 74 73.0
arahy.Tifrunner.gnm1.ann1.S1CX09 Arachis hypogaea HOM05D006545 ORTHO05D007985 4.7e-20 101.3 74 73.0
Cc06_g11430 Coffea canephora HOM05D006545 ORTHO05D007985 4.7e-20 101.3 77 67.5
Manes.16G101800 Manihot esculenta HOM05D006545 ORTHO05D007985 4.7e-20 101.3 74 75.7
PSO210G4511 Papaver somniferum HOM05D006545 ORTHO05D007985 4.7e-20 101.3 76 71.1
Duzib168G1224 Durio zibethinus HOM05D006545 ORTHO05D007985 6.1e-20 100.9 76 73.7
Prupe.7G209400 Prunus persica HOM05D006545 ORTHO05D007985 6.1e-20 100.9 74 75.7
FvH4_1g07510 Fragaria vesca HOM05D006545 ORTHO05D007985 8.0e-20 100.5 74 74.3
FAN19G0384 Fragaria x ananassa HOM05D006545 ORTHO05D007985 8.0e-20 100.5 74 74.3
FAN23G2021 Fragaria x ananassa HOM05D006545 ORTHO05D007985 8.0e-20 100.5 74 74.3
FAN26G0590 Fragaria x ananassa HOM05D006545 ORTHO05D007985 8.0e-20 100.5 74 74.3
PSO210G2413 Papaver somniferum HOM05D006545 ORTHO05D007985 8.0e-20 100.5 76 69.7
AUR62029070 Chenopodium quinoa HOM05D006545 ORTHO05D007985 1.0e-19 100.1 76 68.4
TWI63G0169 Tripterygium wilfordii HOM05D006545 ORTHO05D007985 1.4e-19 99.8 74 74.3
Zm00001eb383910 Zea mays HOM05D006545 ORTHO05D007985 1.8e-19 99.4 75 70.7
Duzib150G0099 Durio zibethinus HOM05D006545 ORTHO05D007985 2.3e-19 99.0 75 73.3
Nn8g38862 Nelumbo nucifera HOM05D006545 ORTHO05D007985 2.3e-19 99.0 75 73.3
unitig_699.g19296 Utricularia gibba HOM05D006545 ORTHO05D007985 2.3e-19 99.0 75 70.7
Sabra06G0115900 Salix brachista HOM05D006545 ORTHO05D007985 4.0e-19 98.2 75 69.3
Aqoxy7G01208 Aquilegia oxysepala HOM05D006545 ORTHO05D007985 8.8e-19 97.1 74 71.6
Gohir.A13G193400 Gossypium hirsutum HOM05D006545 ORTHO05D007985 8.8e-19 97.1 75 70.7
Manes.03G034000 Manihot esculenta HOM05D006545 ORTHO05D007985 8.8e-19 97.1 74 71.6
PSO832G3375 Papaver somniferum HOM05D006545 ORTHO05D007985 8.8e-19 97.1 77 64.9
CDE06G0764 Ceratophyllum demersum HOM05D006545 ORTHO05D007985 1.2e-18 96.7 74 70.3
CDE07G1614 Ceratophyllum demersum HOM05D006545 ORTHO05D007985 1.2e-18 96.7 74 70.3
Ah.09g228260 Amaranthus hybridus HOM05D006545 ORTHO05D007985 1.5e-18 96.3 76 65.8
MBI04_g31162_MAGBIO Magnolia biondii HOM05D006545 ORTHO05D007985 1.5e-18 96.3 75 66.7
PSO063G6244 Papaver somniferum HOM05D006545 ORTHO05D007985 1.5e-18 96.3 77 64.9
Potri.006G146800 Populus trichocarpa HOM05D006545 ORTHO05D007985 1.5e-18 96.3 75 68.0
MD02G1079700 Malus domestica HOM05D006545 ORTHO05D007985 2.0e-18 95.9 75 69.3
Nitab4.5_0004526g0070 Nicotiana tabacum HOM05D006545 ORTHO05D007985 2.6e-18 95.5 64 82.8
Gohir.D13G199200 Gossypium hirsutum HOM05D006545 ORTHO05D007985 3.4e-18 95.1 75 69.3
Zm00001eb277360 Zea mays HOM05D006545 ORTHO05D007985 7.5e-18 94.0 74 66.2
Gorai.013G227700 Gossypium raimondii HOM05D006545 ORTHO05D007985 1.7e-17 92.8 75 68.0
Sed0026852 Sechium edule HOM05D006545 ORTHO05D007985 1.7e-17 92.8 74 67.6
C01p09580 Brassica napus HOM05D000125 ORTHO05D007985 6.3e-17 90.9 63 85.7
Mapoly0003s0235 Marchantia polymorpha HOM05D006545 ORTHO05D007985 1.1e-16 90.1 73 65.8
MD15G1207400 Malus domestica HOM05D006545 ORTHO05D007985 9.1e-16 87.0 74 60.8
Nitab4.5_0004223g0010 Nicotiana tabacum HOM05D006545 ORTHO05D007985 9.1e-16 87.0 61 70.5
SalBow5G5008 Salvia bowleyana HOM05D006545 ORTHO05D007985 4.5e-15 84.7 62 74.2
C01p09620 Brassica napus HOM05D006545 ORTHO05D007985 5.0e-14 81.3 95 60.0
Pp3c11_23220 Physcomitrium patens HOM05D006545 ORTHO05D007985 6.5e-14 80.9 77 58.4
TAR624G0377 Trochodendron aralioides HOM05D002302 ORTHO05D002728 1.1e-13 80.1 64 70.3
HPP92_008778 Vanilla planifolia HOM05D006545 ORTHO05D007985 1.5e-13 79.7 58 69.0
HanXRQChr12g0377121 Helianthus annuus HOM05D006545 ORTHO05D007985 3.2e-13 78.6 55 80.0
Nitab4.5_0000095g0160 Nicotiana tabacum HOM05D006545 ORTHO05D007985 3.2e-13 78.6 72 59.7
BcaB03g12615 Brassica carinata HOM05D006545 ORTHO05D007985 4.2e-13 78.2 48 83.3
A08p19550 Brassica napus HOM05D006545 ORTHO05D007985 5.5e-13 77.8 43 97.7
SMO361G0088 Selaginella moellendorffii HOM05D006545 ORTHO05D007985 2.7e-12 75.5 75 52.0
FAN26G2289 Fragaria x ananassa HOM05D006545 ORTHO05D007985 3.6e-12 75.1 60 65.0
COL.COLO4_18197 Corchorus olitorius HOM05D002302 ORTHO05D002728 4.7e-12 74.7 65 64.6
Rhsim03G0232100 Rhododendron simsii HOM05D000004 ORTHO05D007985 9.8e-10 67.0 47 80.9
Lj7C676T8 Lonicera japonica HOM05D006545 ORTHO05D007985 3.5e-07 58.5 37 83.8
C01p09610 Brassica napus HOM05D000125 ORTHO05D000120 2.9e-06 55.5 37 83.8


User provided reference genes

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