Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C03p88910 Brassica napus HOM05D010956 ORTHO05D013758 2.1e-258 895.2 452 100.0
C02p05770 Brassica napus HOM05D000377 ORTHO05D001957 4.3e-86 322.8 244 72.1
A07p44950 Brassica napus HOM05D010956 ORTHO05D013758 5.4e-65 252.7 185 74.6
C09p68220 Brassica napus HOM05D010956 ORTHO05D013758 6.6e-63 245.7 174 71.8
BolC8t48114H Brassica oleracea HOM05D010956 ORTHO05D022083 4.3e-38 163.3 131 69.5
A01p08010 Brassica napus HOM05D000476 ORTHO05D004987 3.4e-35 153.7 322 39.1
BraA01t00746Z Brassica rapa HOM05D000476 ORTHO05D004987 3.4e-35 153.7 322 39.1
BcaC09g51792 Brassica carinata HOM05D000476 ORTHO05D004987 4.2e-33 146.7 328 37.5
C01p08970 Brassica napus HOM05D000476 ORTHO05D004987 4.2e-33 146.7 328 37.5
BcaNung04413 Brassica carinata HOM05D000476 ORTHO05D004987 7.1e-33 146.0 342 36.8
C09p23920 Brassica napus HOM05D003096 ORTHO05D003521 1.6e-32 144.8 129 61.2
BolC1t00887H Brassica oleracea HOM05D000476 ORTHO05D004987 2.7e-32 144.1 328 36.6
BolC7t46751H Brassica oleracea HOM05D010956 ORTHO05D022083 4.8e-29 133.3 83 78.3
Sp7g27980 Schrenkiella parvula HOM05D000476 ORTHO05D004987 1.1e-22 112.1 381 30.7
Thhalv10024537m.g Eutrema salsugineum HOM05D000476 ORTHO05D004987 5.7e-22 109.8 376 31.9
C03p32160 Brassica napus HOM05D010956 ORTHO05D022083 1.8e-20 104.8 177 45.2
Carub.0007s1048 Capsella rubella HOM05D000476 ORTHO05D004987 9.0e-20 102.4 384 29.7
GSVIVG01010901001 Vitis vinifera HOM05D000476 ORTHO05D004987 1.2e-19 102.1 330 31.5
AL7G22070 Arabidopsis lyrata HOM05D000476 ORTHO05D004987 1.5e-19 101.7 389 30.8
Peaxi162Scf00776g00228 Petunia axillaris HOM05D000476 ORTHO05D004987 3.4e-19 100.5 253 32.8
BraA01t02858Z Brassica rapa HOM05D010956 ORTHO05D013758 5.9e-19 99.8 100 53.0
BolC4t24883H Brassica oleracea HOM05D010956 ORTHO05D013758 1.3e-18 98.6 100 52.0
BolC1t03153H Brassica oleracea HOM05D010956 ORTHO05D013758 1.7e-18 98.2 100 52.0
BolC4t24882H Brassica oleracea HOM05D010956 ORTHO05D013758 2.2e-18 97.8 100 52.0
Atru.chr7.818 Acer truncatum HOM05D000476 ORTHO05D004987 6.5e-18 96.3 86 66.3
Haze_21986 Corylus avellana HOM05D000476 ORTHO05D004987 6.5e-18 96.3 86 68.6
Haze_21989 Corylus avellana HOM05D000476 ORTHO05D004987 6.5e-18 96.3 86 68.6
Ciclev10007457m.g Citrus clementina HOM05D000476 ORTHO05D004987 8.5e-18 95.9 86 67.4
Cfa013432 Carpinus fangiana HOM05D000476 ORTHO05D004987 1.4e-17 95.1 86 66.3
BolC3t20649H Brassica oleracea HOM05D010956 ORTHO05D013758 2.5e-17 94.4 68 66.2
CiPaw.08G033700 Carya illinoinensis HOM05D000476 ORTHO05D004987 2.5e-17 94.4 86 65.1
BolC2t07280H Brassica oleracea HOM05D010956 ORTHO05D013758 4.2e-17 93.6 68 66.2
AT4G30130 Arabidopsis thaliana HOM05D000476 ORTHO05D004987 5.5e-17 93.2 389 29.3
BraA09t39434Z Brassica rapa HOM05D010956 ORTHO05D013758 5.5e-17 93.2 100 50.0
Duzib150G0836 Durio zibethinus HOM05D000476 ORTHO05D004987 5.5e-17 93.2 86 65.1
Potri.006G077000 Populus trichocarpa HOM05D000476 ORTHO05D004987 7.2e-17 92.8 86 65.1
TWI63G1758 Tripterygium wilfordii HOM05D000476 ORTHO05D004987 1.2e-16 92.0 86 65.1
BolC7t41819H Brassica oleracea HOM05D010956 ORTHO05D013758 1.6e-16 91.7 100 50.0
Nn8g40976 Nelumbo nucifera HOM05D000476 ORTHO05D004987 1.6e-16 91.7 86 65.1
Carub.0003s3333 Capsella rubella HOM05D000476 ORTHO05D004987 2.7e-16 90.9 88 63.6
MD00G1185400 Malus domestica HOM05D000476 ORTHO05D004987 2.7e-16 90.9 86 62.8
Rhsim01G0120300 Rhododendron simsii HOM05D000476 ORTHO05D004987 4.6e-16 90.1 86 62.8
COL.COLO4_29314 Corchorus olitorius HOM05D000476 ORTHO05D004987 6.1e-16 89.7 86 65.1
AL3G52830 Arabidopsis lyrata HOM05D000476 ORTHO05D004987 7.9e-16 89.4 88 62.5
Thhalv10022561m.g Eutrema salsugineum HOM05D000476 ORTHO05D004987 1.0e-15 89.0 88 63.6
THA.LOC104814668 Tarenaya hassleriana HOM05D000476 ORTHO05D004987 1.0e-15 89.0 88 60.2
vmacro20834 Vaccinium macrocarpon HOM05D000476 ORTHO05D004987 1.0e-15 89.0 86 62.8
CSS0030263 Camellia sinensis var. sinensis HOM05D000476 ORTHO05D004987 1.8e-15 88.2 377 28.4
Cpa.g.sc95.27 Carica papaya HOM05D000476 ORTHO05D004987 1.8e-15 88.2 86 62.8
Sabra06G0058300 Salix brachista HOM05D000476 ORTHO05D004987 3.0e-15 87.4 86 64.0
CARHR109610 Cardamine hirsuta HOM05D000476 ORTHO05D004987 3.9e-15 87.0 82 65.9
CARHR238030 Cardamine hirsuta HOM05D000476 ORTHO05D004987 3.9e-15 87.0 351 29.9
Thecc.09G181300 Theobroma cacao HOM05D000476 ORTHO05D004987 3.9e-15 87.0 85 63.5
FvH4_4g07580 Fragaria vesca HOM05D000476 ORTHO05D004987 5.1e-15 86.7 87 59.8
FAN22G0745 Fragaria x ananassa HOM05D000476 ORTHO05D004987 5.1e-15 86.7 87 59.8
MBI16_g18214_MAGBIO Magnolia biondii HOM05D000476 ORTHO05D004987 5.1e-15 86.7 87 60.9
Aa31LG8G16150 Aethionema arabicum HOM05D000476 ORTHO05D004987 6.7e-15 86.3 81 64.2
ATR0626G137 Amborella trichopoda HOM05D000476 ORTHO05D004987 6.7e-15 86.3 86 61.6
AT2G19090 Arabidopsis thaliana HOM05D000476 ORTHO05D004987 6.7e-15 86.3 88 61.4
Dinv25416 Davidia involucrata HOM05D000476 ORTHO05D004987 8.8e-15 85.9 86 60.5
Manes.14G158839 Manihot esculenta HOM05D000476 ORTHO05D004987 8.8e-15 85.9 85 63.5
Prupe.1G079100 Prunus persica HOM05D000476 ORTHO05D004987 8.8e-15 85.9 86 57.0
PGR044G2442 Punica granatum HOM05D000476 ORTHO05D004987 1.1e-14 85.5 88 65.9
Actinidia28216 Actinidia chinensis HOM05D000476 ORTHO05D004987 2.0e-14 84.7 86 61.6
C09p14450 Brassica napus HOM05D000476 ORTHO05D004987 2.0e-14 84.7 85 61.2
BolC9t54348H Brassica oleracea HOM05D000476 ORTHO05D004987 2.0e-14 84.7 85 61.2
BraA09t36866Z Brassica rapa HOM05D000476 ORTHO05D004987 2.0e-14 84.7 85 61.2
Aqoxy7G02736 Aquilegia oxysepala HOM05D000476 ORTHO05D004987 2.5e-14 84.3 86 60.5
A07p01640 Brassica napus HOM05D000476 ORTHO05D004987 2.5e-14 84.3 89 59.6
BraA07t27966Z Brassica rapa HOM05D000476 ORTHO05D004987 2.5e-14 84.3 89 59.6
Lj5A679T31 Lonicera japonica HOM05D000476 ORTHO05D004987 2.5e-14 84.3 87 57.5
Sp3g32490 Schrenkiella parvula HOM05D000476 ORTHO05D004987 2.5e-14 84.3 88 62.5
TAR506G0001 Trochodendron aralioides HOM05D000476 ORTHO05D004987 3.3e-14 84.0 86 57.0
Gohir.A13G212500 Gossypium hirsutum HOM05D000476 ORTHO05D004987 4.3e-14 83.6 85 60.0
Gohir.D13G216600 Gossypium hirsutum HOM05D000476 ORTHO05D004987 4.3e-14 83.6 85 60.0
Gorai.013G246900 Gossypium raimondii HOM05D000476 ORTHO05D004987 4.3e-14 83.6 85 60.0
QL11p004794 Quercus lobata HOM05D000476 ORTHO05D004987 4.3e-14 83.6 86 60.5
RcHm_v2.0_Chr4g0400181 Rosa chinensis HOM05D000476 ORTHO05D004987 5.7e-14 83.2 88 60.2
DCAR_019822 Daucus carota HOM05D000476 ORTHO05D004987 7.4e-14 82.8 86 60.5
Glyma.13G099500 Glycine max HOM05D000476 ORTHO05D004987 9.7e-14 82.4 88 58.0
Oeu057498.1 Olea europaea HOM05D000476 ORTHO05D004987 2.8e-13 80.9 86 55.8
BcaC06g36519 Brassica carinata HOM05D000476 ORTHO05D004987 4.8e-13 80.1 90 58.9
C07p03400 Brassica napus HOM05D000476 ORTHO05D004987 4.8e-13 80.1 90 58.9
BolC7t40739H Brassica oleracea HOM05D000476 ORTHO05D004987 4.8e-13 80.1 90 58.9
Glyma.09G058000 Glycine max HOM05D000476 ORTHO05D004987 4.8e-13 80.1 87 54.0
Lj6g0013002 Lotus japonicus HOM05D000476 ORTHO05D004987 4.8e-13 80.1 87 52.9
Glyma.15G164100 Glycine max HOM05D000476 ORTHO05D004987 6.3e-13 79.7 86 54.7
Psat1g145880 Pisum sativum HOM05D000476 ORTHO05D004987 6.3e-13 79.7 89 52.8
SalBow5G1589 Salvia bowleyana HOM05D000476 ORTHO05D004987 6.3e-13 79.7 85 56.5
MD13G1245700 Malus domestica HOM05D000476 ORTHO05D004987 8.2e-13 79.3 86 58.1
Medtr2g036920 Medicago truncatula HOM05D000476 ORTHO05D004987 8.2e-13 79.3 87 52.9
Nitab4.5_0009877g0040 Nicotiana tabacum HOM05D000476 ORTHO05D004987 8.2e-13 79.3 85 60.0
ClCG11G011920 Citrullus lanatus HOM05D000476 ORTHO05D004987 1.1e-12 79.0 88 58.0
FAN17G2277 Fragaria x ananassa HOM05D000476 ORTHO05D004987 1.1e-12 79.0 95 55.8
FAN12G0029 Fragaria x ananassa HOM05D000476 ORTHO05D004987 1.4e-12 78.6 93 54.8
MELO3C003998.2 Cucumis melo HOM05D000476 ORTHO05D004987 1.8e-12 78.2 88 56.8
CsaV3_2G008590 Cucumis sativus L. HOM05D000476 ORTHO05D004987 1.8e-12 78.2 88 56.8
TPR.G9019 Trifolium pratense HOM05D000476 ORTHO05D004987 1.8e-12 78.2 87 52.9
BcaC04g22868 Brassica carinata HOM05D000476 ORTHO05D004987 2.4e-12 77.8 85 58.8
CAN.G854.13 Capsicum annuum HOM05D000476 ORTHO05D004987 2.4e-12 77.8 85 58.8
Ca_02043_v3 Cicer arietinum L. HOM05D000476 ORTHO05D004987 2.4e-12 77.8 86 53.5
Ca_02047_v3 Cicer arietinum L. HOM05D000476 ORTHO05D004987 2.4e-12 77.8 86 53.5
Nitab4.5_0000441g0050 Nicotiana tabacum HOM05D000476 ORTHO05D004987 2.4e-12 77.8 85 58.8
Sed0006240 Sechium edule HOM05D000476 ORTHO05D004987 2.4e-12 77.8 87 56.3
Sopen07g024270 Solanum pennellii HOM05D000476 ORTHO05D004987 2.4e-12 77.8 85 58.8
Glyma.17G060600 Glycine max HOM05D000476 ORTHO05D004987 5.3e-12 76.6 88 54.5
Lalb_Chr18g0052521 Lupinus albus HOM05D000476 ORTHO05D004987 5.3e-12 76.6 86 53.5
Sc14g0001360 Simmondsia chinensis HOM05D000476 ORTHO05D004987 6.9e-12 76.3 86 55.8
Solyc07g047830.3 Solanum lycopersicum HOM05D000476 ORTHO05D004987 6.9e-12 76.3 85 57.6
PGSC0003DMG400006129 Solanum tuberosum HOM05D000476 ORTHO05D004987 6.9e-12 76.3 86 57.0
MSTRG.10451 Avicennia marina HOM05D000476 ORTHO05D004987 2.0e-11 74.7 85 54.1
Migut.L01895 Erythranthe guttata HOM05D000476 ORTHO05D004987 2.0e-11 74.7 93 52.7
Lalb_Chr20g0116291 Lupinus albus HOM05D000476 ORTHO05D004987 2.0e-11 74.7 86 53.5
Nn2g12746 Nelumbo nucifera HOM05D000476 ORTHO05D004987 2.0e-11 74.7 84 52.4
Hund26320 Selenicereus undatus HOM05D000476 ORTHO05D004987 2.0e-11 74.7 86 53.5
Phvul.003G142800 Phaseolus vulgaris HOM05D000476 ORTHO05D004987 2.6e-11 74.3 86 52.3
VMungo1309G0449 Vigna mungo HOM05D000476 ORTHO05D004987 3.4e-11 73.9 86 51.2
Eucgr.C02248 Eucalyptus grandis HOM05D000476 ORTHO05D004987 4.5e-11 73.6 87 55.2
CiPaw.07G195200 Carya illinoinensis HOM05D000476 ORTHO05D004987 5.9e-11 73.2 357 26.6
arahy.Tifrunner.gnm1.ann1.QRCU7C Arachis hypogaea HOM05D000476 ORTHO05D004987 1.0e-10 72.4 125 44.0
EL10Ac8g18316 Beta vulgaris HOM05D000476 ORTHO05D004987 1.3e-10 72.0 87 51.7
Sp5g21160 Schrenkiella parvula HOM05D010153 ORTHO05D012295 1.7e-10 71.6 153 34.6
Phvul.009G237700 Phaseolus vulgaris HOM05D000476 ORTHO05D004987 2.2e-10 71.2 86 50.0
PSO079G0004 Papaver somniferum HOM05D000476 ORTHO05D004987 2.9e-10 70.9 87 51.7
PSO423G0107 Papaver somniferum HOM05D000476 ORTHO05D004987 2.9e-10 70.9 87 51.7
BolC9t60166H Brassica oleracea HOM05D010956 ORTHO05D022083 3.8e-10 70.5 73 54.8
CDE05G1192 Ceratophyllum demersum HOM05D007715 ORTHO05D004987 3.8e-10 70.5 87 56.3
Zm00001eb035710 Zea mays HOM05D000476 ORTHO05D004987 3.8e-10 70.5 89 58.4
Zm00001eb174640 Zea mays HOM05D000476 ORTHO05D004987 3.8e-10 70.5 89 58.4
arahy.Tifrunner.gnm1.ann1.4E3UXJ Arachis hypogaea HOM05D000476 ORTHO05D004987 6.5e-10 69.7 86 51.2
arahy.Tifrunner.gnm1.ann1.94TNN4 Arachis hypogaea HOM05D000476 ORTHO05D004987 6.5e-10 69.7 125 42.4
arahy.Tifrunner.gnm1.ann1.U5BQ4B Arachis hypogaea HOM05D000476 ORTHO05D004987 6.5e-10 69.7 86 51.2
Lj4g0015498 Lotus japonicus HOM05D000476 ORTHO05D004987 6.5e-10 69.7 86 51.2
BraA08t35401Z Brassica rapa HOM05D010956 ORTHO05D022083 8.5e-10 69.3 70 57.1
THA.LOC104819969 Tarenaya hassleriana HOM05D000476 ORTHO05D004987 8.5e-10 69.3 86 51.2
HanXRQChr10g0309241 Helianthus annuus HOM05D000476 ORTHO05D004987 1.1e-09 68.9 85 52.9
HPP92_003060 Vanilla planifolia HOM05D000476 ORTHO05D004987 1.1e-09 68.9 86 52.3
VMungo1215G2438 Vigna mungo HOM05D000476 ORTHO05D004987 1.1e-09 68.9 124 42.7
SGA_v2.0_scaffold41G15860 Striga asiatica HOM05D000476 ORTHO05D004987 2.5e-09 67.8 87 55.2
BcaB03g16802 Brassica carinata HOM05D000476 ORTHO05D004987 3.2e-09 67.4 72 62.5
BolC9t60127H Brassica oleracea HOM05D010956 ORTHO05D022083 4.2e-09 67.0 70 55.7
AUR62021330 Chenopodium quinoa HOM05D000476 ORTHO05D004987 7.2e-09 66.2 88 48.9
Cc06_g21650 Coffea canephora HOM05D000476 ORTHO05D004987 7.2e-09 66.2 100 47.0
AUR62033245 Chenopodium quinoa HOM05D000476 ORTHO05D004987 9.4e-09 65.9 87 49.4
Lalb_Chr07g0180601 Lupinus albus HOM05D000476 ORTHO05D004987 1.6e-08 65.1 86 47.7
unitig_578.g16068 Utricularia gibba HOM05D000476 ORTHO05D004987 1.6e-08 65.1 87 50.6
ECA234G2540 Erigeron canadensis HOM05D000476 ORTHO05D004987 2.7e-08 64.3 88 48.9
CANSAT11G0766 Cannabis sativa HOM05D000476 ORTHO05D004987 4.7e-08 63.5 88 47.7
Medtr4g127620 Medicago truncatula HOM05D000476 ORTHO05D004987 4.7e-08 63.5 79 50.6
Psat0ss2585g0040 Pisum sativum HOM05D000476 ORTHO05D004987 1.4e-07 62.0 88 47.7
Lsat_1_v5_gn_5_82221 Lactuca sativa HOM05D000476 ORTHO05D004987 1.8e-07 61.6 132 38.6
Ca_21246_v3 Cicer arietinum L. HOM05D000476 ORTHO05D004987 2.3e-07 61.2 127 42.5
Ah.09g230180 Amaranthus hybridus HOM05D000476 ORTHO05D004987 3.0e-07 60.8 87 47.1
Actinidia29958 Actinidia chinensis HOM05D000476 ORTHO05D004987 5.1e-07 60.1 60 65.0
Aa31LG2G20440 Aethionema arabicum HOM05D000476 ORTHO05D004987 2.6e-06 57.8 307 28.0
Ah.14g083660 Amaranthus hybridus HOM05D000476 ORTHO05D004987 3.3e-06 57.4 98 43.9
C05p00440 Brassica napus HOM05D010956 ORTHO05D013758 4.4e-06 57.0 45 75.6
Sp6g10120 Schrenkiella parvula HOM05D025973 ORTHO05D012295 4.4e-06 57.0 124 32.3
MBI13_g31545_MAGBIO Magnolia biondii HOM05D000476 ORTHO05D004987 9.7e-06 55.8 84 46.4


User provided reference genes

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