Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C03p88620 Brassica napus HOM05D004106 ORTHO05D004381 2.2e-91 339.0 174 100.0
BolC3t21168H Brassica oleracea HOM05D004106 ORTHO05D004381 4.5e-84 314.7 183 92.3
A08p19160 Brassica napus HOM05D004106 ORTHO05D004381 1.4e-77 293.1 183 88.5
BraA08t33877Z Brassica rapa HOM05D004106 ORTHO05D004381 1.5e-76 289.7 183 87.4
Sp7g28490 Schrenkiella parvula HOM05D004106 ORTHO05D004381 2.9e-75 285.4 183 85.8
Thhalv10026346m.g Eutrema salsugineum HOM05D004106 ORTHO05D004381 1.1e-74 283.5 185 84.9
AL7G21520 Arabidopsis lyrata HOM05D004106 ORTHO05D004381 3.3e-71 271.9 183 83.1
BcaB03g12652 Brassica carinata HOM05D004106 ORTHO05D004381 1.3e-70 270.0 177 84.2
AT4G30620 Arabidopsis thaliana HOM05D004106 ORTHO05D004381 2.2e-70 269.2 182 82.4
Carub.0007s0995 Capsella rubella HOM05D004106 ORTHO05D004381 2.2e-70 269.2 180 83.3
Aa31LG2G19880 Aethionema arabicum HOM05D004106 ORTHO05D004381 1.0e-67 260.4 186 79.6
CARHR184720 Cardamine hirsuta HOM05D004106 ORTHO05D004381 1.0e-64 250.4 186 76.3
Sp4g02930 Schrenkiella parvula HOM05D004106 ORTHO05D004381 3.0e-64 248.8 183 76.0
Thhalv10000343m.g Eutrema salsugineum HOM05D004106 ORTHO05D004381 1.3e-62 243.4 177 76.8
THA.LOC104819993 Tarenaya hassleriana HOM05D004106 ORTHO05D004381 1.3e-62 243.4 188 73.9
THA.LOC104803919 Tarenaya hassleriana HOM05D004106 ORTHO05D004381 1.7e-62 243.0 189 73.5
AL4G14070 Arabidopsis lyrata HOM05D004106 ORTHO05D004381 3.7e-62 241.9 182 75.8
A09p56640 Brassica napus HOM05D004106 ORTHO05D004381 1.1e-61 240.4 183 74.9
C08p39590 Brassica napus HOM05D004106 ORTHO05D004381 1.1e-61 240.4 183 74.9
BolC8t51532H Brassica oleracea HOM05D004106 ORTHO05D004381 1.1e-61 240.4 183 74.9
BcaC07g40965 Brassica carinata HOM05D004106 ORTHO05D004381 3.1e-61 238.8 182 74.7
BraA09t41055Z Brassica rapa HOM05D004106 ORTHO05D004381 4.1e-61 238.4 183 74.3
Carub.0004s0318 Capsella rubella HOM05D004106 ORTHO05D004381 5.3e-61 238.0 186 73.1
AT2G24020 Arabidopsis thaliana HOM05D004106 ORTHO05D004381 5.9e-60 234.6 183 73.2
Aa31LG7G12810 Aethionema arabicum HOM05D004106 ORTHO05D004381 2.5e-58 229.2 209 65.6
ECA240G3283 Erigeron canadensis HOM05D004106 ORTHO05D004381 3.1e-53 212.2 172 68.6
Cpa.g.sc46.167 Carica papaya HOM05D004106 ORTHO05D004381 5.3e-53 211.5 182 69.2
ATR0580G427 Amborella trichopoda HOM05D004106 ORTHO05D004381 4.5e-52 208.4 171 69.6
HanXRQChr03g0065371 Helianthus annuus HOM05D004106 ORTHO05D004381 1.3e-51 206.8 160 70.6
Atru.chr7.22 Acer truncatum HOM05D004106 ORTHO05D004381 2.2e-51 206.1 195 65.1
CiPaw.15G167000 Carya illinoinensis HOM05D004106 ORTHO05D004381 2.2e-51 206.1 141 78.0
Migut.E01458 Erythranthe guttata HOM05D004106 ORTHO05D004381 2.2e-51 206.1 139 79.9
QL02p093501 Quercus lobata HOM05D004106 ORTHO05D004381 2.9e-51 205.7 142 78.9
Ciclev10009489m.g Citrus clementina HOM05D004106 ORTHO05D004381 5.0e-51 204.9 140 80.7
HanXRQChr09g0244601 Helianthus annuus HOM05D004106 ORTHO05D004381 5.0e-51 204.9 186 63.4
Manes.14G144700 Manihot esculenta HOM05D004106 ORTHO05D004381 5.0e-51 204.9 179 67.6
BcaC01g01145 Brassica carinata HOM05D004106 ORTHO05D004381 6.5e-51 204.5 149 78.5
CSS0032495 Camellia sinensis var. sinensis HOM05D004106 ORTHO05D004381 6.5e-51 204.5 145 75.9
Hund02987 Selenicereus undatus HOM05D004106 ORTHO05D004381 1.1e-50 203.8 141 78.0
Actinidia14131 Actinidia chinensis HOM05D004106 ORTHO05D004381 1.9e-50 203.0 139 79.9
Dinv08223 Davidia involucrata HOM05D004106 ORTHO05D004381 1.9e-50 203.0 140 80.0
Migut.K00317 Erythranthe guttata HOM05D004106 ORTHO05D004381 1.9e-50 203.0 174 65.5
SGA_v2.0_scaffold4G02174 Striga asiatica HOM05D004106 ORTHO05D004381 1.9e-50 203.0 156 73.7
Potri.018G105600 Populus trichocarpa HOM05D004106 ORTHO05D004381 2.5e-50 202.6 197 62.4
arahy.Tifrunner.gnm1.ann1.J1V5JT Arachis hypogaea HOM05D004106 ORTHO05D004381 3.2e-50 202.2 142 78.9
Lalb_Chr13g0300831 Lupinus albus HOM05D004106 ORTHO05D004381 3.2e-50 202.2 139 79.1
Dinv08178 Davidia involucrata HOM05D004106 ORTHO05D004381 4.2e-50 201.8 140 79.3
PGSC0003DMG400007906 Solanum tuberosum HOM05D004106 ORTHO05D004381 4.2e-50 201.8 183 65.0
arahy.Tifrunner.gnm1.ann1.U84FQB Arachis hypogaea HOM05D004106 ORTHO05D004381 5.5e-50 201.4 142 78.2
Medtr0380s0040 Medicago truncatula HOM05D004106 ORTHO05D004381 7.2e-50 201.1 141 75.9
Nitab4.5_0002011g0110 Nicotiana tabacum HOM05D004106 ORTHO05D004381 9.4e-50 200.7 138 76.8
TAR383G0918 Trochodendron aralioides HOM05D004106 ORTHO05D004381 9.4e-50 200.7 140 80.0
GSVIVG01023623001 Vitis vinifera HOM05D004106 ORTHO05D004381 9.4e-50 200.7 143 76.9
EL10Ac2g02497 Beta vulgaris HOM05D004106 ORTHO05D004381 1.2e-49 200.3 152 73.0
PSO339G2511 Papaver somniferum HOM05D004106 ORTHO05D004381 1.6e-49 199.9 142 78.2
PSO384G4038 Papaver somniferum HOM05D004106 ORTHO05D004381 1.6e-49 199.9 142 78.2
TAR626G0743 Trochodendron aralioides HOM05D004106 ORTHO05D004381 1.6e-49 199.9 163 71.8
Aqoxy7G02464 Aquilegia oxysepala HOM05D004106 ORTHO05D004381 2.1e-49 199.5 143 76.9
MBI15_g18237_MAGBIO Magnolia biondii HOM05D004106 ORTHO05D004381 2.1e-49 199.5 140 77.1
Nitab4.5_0003563g0010 Nicotiana tabacum HOM05D004106 ORTHO05D004381 2.1e-49 199.5 138 76.8
Solyc12g009980.2 Solanum lycopersicum HOM05D004106 ORTHO05D004381 2.1e-49 199.5 183 64.5
Glyma.06G225800 Glycine max HOM05D004106 ORTHO05D004381 2.7e-49 199.1 140 78.6
Oeu006863.1 Olea europaea HOM05D004106 ORTHO05D004381 2.7e-49 199.1 140 79.3
Peaxi162Scf00045g02039 Petunia axillaris HOM05D004106 ORTHO05D004381 2.7e-49 199.1 137 78.1
CAN.G551.46 Capsicum annuum HOM05D004106 ORTHO05D004381 3.6e-49 198.7 183 63.9
Cc06_g14830 Coffea canephora HOM05D004106 ORTHO05D004381 3.6e-49 198.7 184 64.1
Gohir.A07G027300 Gossypium hirsutum HOM05D004106 ORTHO05D004381 3.6e-49 198.7 139 77.7
Gorai.001G032700 Gossypium raimondii HOM05D004106 ORTHO05D004381 3.6e-49 198.7 139 77.7
Phvul.005G005700 Phaseolus vulgaris HOM05D004106 ORTHO05D004381 3.6e-49 198.7 140 77.1
VMungo1080G0447 Vigna mungo HOM05D004106 ORTHO05D004381 3.6e-49 198.7 140 77.9
Solyc08g006780.3 Solanum lycopersicum HOM05D004106 ORTHO05D004381 4.7e-49 198.4 138 77.5
CDE05G2988 Ceratophyllum demersum HOM05D004106 ORTHO05D004381 6.1e-49 198.0 142 75.4
Duzib168G0532 Durio zibethinus HOM05D004106 ORTHO05D004381 6.1e-49 198.0 163 69.3
Glyma.12G156200 Glycine max HOM05D004106 ORTHO05D004381 6.1e-49 198.0 144 77.1
Lj4g0010746 Lotus japonicus HOM05D004106 ORTHO05D004381 8.0e-49 197.6 142 78.9
CsaV3_1G029020 Cucumis sativus L. HOM05D004106 ORTHO05D004381 1.0e-48 197.2 140 78.6
Sopen08g002730 Solanum pennellii HOM05D004106 ORTHO05D004381 1.0e-48 197.2 138 76.8
CDE02G1701 Ceratophyllum demersum HOM05D004106 ORTHO05D004381 1.4e-48 196.8 143 74.1
FAN27G3303 Fragaria x ananassa HOM05D004106 ORTHO05D004381 1.4e-48 196.8 135 77.8
Oeu048547.1 Olea europaea HOM05D004106 ORTHO05D004381 1.4e-48 196.8 140 77.9
MD08G1056000 Malus domestica HOM05D004106 ORTHO05D004381 1.8e-48 196.4 137 76.6
Sopen12g004850 Solanum pennellii HOM05D004106 ORTHO05D004381 1.8e-48 196.4 183 63.9
Duzib150G0841 Durio zibethinus HOM05D004106 ORTHO05D004381 2.3e-48 196.1 140 79.3
RcHm_v2.0_Chr6g0299371 Rosa chinensis HOM05D004106 ORTHO05D004381 2.3e-48 196.1 134 77.6
Ca_21133_v3 Cicer arietinum L. HOM05D004106 ORTHO05D004381 3.0e-48 195.7 139 77.0
FvH4_2g41160 Fragaria vesca HOM05D004106 ORTHO05D004381 3.0e-48 195.7 134 77.6
CANSAT11G1220 Cannabis sativa HOM05D004106 ORTHO05D004381 3.9e-48 195.3 143 78.3
HPP92_004701 Vanilla planifolia HOM05D004106 ORTHO05D004381 3.9e-48 195.3 141 74.5
Eucgr.C02535 Eucalyptus grandis HOM05D004106 ORTHO05D004381 5.2e-48 194.9 136 75.0
Gohir.A05G053000 Gossypium hirsutum HOM05D004106 ORTHO05D004381 5.2e-48 194.9 140 77.1
Gohir.D05G054601 Gossypium hirsutum HOM05D004106 ORTHO05D004381 5.2e-48 194.9 140 77.1
Gorai.009G056300 Gossypium raimondii HOM05D004106 ORTHO05D004381 5.2e-48 194.9 140 77.1
Lalb_Chr07g0179881 Lupinus albus HOM05D004106 ORTHO05D004381 5.2e-48 194.9 141 75.2
FAN15G2986 Fragaria x ananassa HOM05D004106 ORTHO05D004381 6.7e-48 194.5 134 77.6
Prupe.7G264300 Prunus persica HOM05D004106 ORTHO05D004381 6.7e-48 194.5 135 78.5
COL.COLO4_18821 Corchorus olitorius HOM05D004106 ORTHO05D004381 1.1e-47 193.7 138 76.1
Lsat_1_v5_gn_7_50001 Lactuca sativa HOM05D004106 ORTHO05D004381 1.1e-47 193.7 172 64.5
Prupe.1G394300 Prunus persica HOM05D004106 ORTHO05D004381 1.1e-47 193.7 136 77.2
Eucgr.C02498 Eucalyptus grandis HOM05D004106 ORTHO05D004381 1.5e-47 193.4 159 66.0
Peaxi162Scf00062g00225 Petunia axillaris HOM05D004106 ORTHO05D004381 2.0e-47 193.0 141 75.2
TWI32G0932 Tripterygium wilfordii HOM05D004106 ORTHO05D004381 2.0e-47 193.0 162 69.8
Manes.03G008200 Manihot esculenta HOM05D004106 ORTHO05D004381 2.6e-47 192.6 141 73.8
Lj6g0027633 Lotus japonicus HOM05D004106 ORTHO05D004381 3.3e-47 192.2 138 75.4
MBI14_g09102_MAGBIO Magnolia biondii HOM05D004106 ORTHO05D004381 3.3e-47 192.2 178 62.9
PGSC0003DMG400026299 Solanum tuberosum HOM05D004106 ORTHO05D004381 4.4e-47 191.8 138 73.9
TPR.G3593 Trifolium pratense HOM05D004106 ORTHO05D004381 4.4e-47 191.8 145 73.1
unitig_749.g13818 Utricularia gibba HOM05D004106 ORTHO05D004381 4.4e-47 191.8 182 64.8
ClCG06G012460 Citrullus lanatus HOM05D004106 ORTHO05D004381 7.4e-47 191.0 141 75.2
Sed0000106 Sechium edule HOM05D004106 ORTHO05D004381 7.4e-47 191.0 142 76.8
Psat1g022480 Pisum sativum HOM05D004106 ORTHO05D004381 1.3e-46 190.3 141 73.0
TWI63G0696 Tripterygium wilfordii HOM05D004106 ORTHO05D004381 1.3e-46 190.3 142 73.9
CAN.G353.7 Capsicum annuum HOM05D004106 ORTHO05D004381 1.7e-46 189.9 138 74.6
Hund25620 Selenicereus undatus HOM05D004106 ORTHO05D004381 1.7e-46 189.9 136 77.9
Os02g0180200 Oryza sativa ssp. japonica HOM05D004106 ORTHO05D004381 2.8e-46 189.1 141 73.0
Aqoxy7G02301 Aquilegia oxysepala HOM05D004106 ORTHO05D004381 3.7e-46 188.7 106 92.5
MD15G1041000 Malus domestica HOM05D004106 ORTHO05D004381 4.8e-46 188.3 136 73.5
PGR102G1248 Punica granatum HOM05D004106 ORTHO05D004381 4.8e-46 188.3 140 75.0
TWI34G1622 Tripterygium wilfordii HOM05D004106 ORTHO05D004381 4.8e-46 188.3 138 73.9
Medtr4g130730 Medicago truncatula HOM05D004106 ORTHO05D004381 6.3e-46 188.0 140 72.1
MSTRG.1632 Avicennia marina HOM05D004106 ORTHO05D004381 8.2e-46 187.6 140 73.6
vmacro06074 Vaccinium macrocarpon HOM05D004106 ORTHO05D004381 1.4e-45 186.8 140 70.7
AUR62024802 Chenopodium quinoa HOM05D004106 ORTHO05D004381 2.4e-45 186.0 107 87.9
AUR62032418 Chenopodium quinoa HOM05D004106 ORTHO05D004381 2.4e-45 186.0 107 87.9
Psat4g009640 Pisum sativum HOM05D004106 ORTHO05D004381 3.1e-45 185.7 137 73.0
TPR.G24849 Trifolium pratense HOM05D004106 ORTHO05D004381 3.1e-45 185.7 136 72.8
Actinidia23107 Actinidia chinensis HOM05D004106 ORTHO05D004381 7.0e-45 184.5 107 88.8
Lalb_Chr12g0198731 Lupinus albus HOM05D004106 ORTHO05D004381 2.0e-44 183.0 107 86.9
SalBow1G1642 Salvia bowleyana HOM05D004106 ORTHO05D004381 2.6e-44 182.6 147 66.0
Cfa013048 Carpinus fangiana HOM05D004106 ORTHO05D004381 4.5e-44 181.8 104 89.4
Zm00001eb206700 Zea mays HOM05D004106 ORTHO05D004381 5.9e-44 181.4 140 72.9
Haze_21409 Corylus avellana HOM05D004106 ORTHO05D004381 1.7e-43 179.9 104 88.5
Ah.10g025490 Amaranthus hybridus HOM05D004106 ORTHO05D004381 2.2e-43 179.5 158 67.1
Pp3c2_35530 Physcomitrium patens HOM05D004106 ORTHO05D004381 1.4e-40 170.2 169 58.6
vmacro05152 Vaccinium macrocarpon HOM05D004106 ORTHO05D004381 1.8e-40 169.9 176 58.0
Mapoly0031s0030 Marchantia polymorpha HOM05D004106 ORTHO05D004381 3.0e-40 169.1 136 64.0
CANSAT54G0776 Cannabis sativa HOM05D004106 ORTHO05D004381 5.7e-39 164.9 135 67.4
Haze_19171 Corylus avellana HOM05D004106 ORTHO05D004381 5.7e-39 164.9 101 84.2
Sabra18G0090100 Salix brachista HOM05D004106 ORTHO05D004381 1.7e-38 163.3 197 54.8
Pp3c1_1160 Physcomitrium patens HOM05D004106 ORTHO05D004381 4.8e-38 161.8 149 59.1
SMO364G0386 Selaginella moellendorffii HOM05D004106 ORTHO05D004381 1.1e-37 160.6 101 78.2
Pp3c11_2360 Physcomitrium patens HOM05D004106 ORTHO05D004381 7.0e-37 157.9 142 57.0
MELO3C010214.2 Cucumis melo HOM05D004106 ORTHO05D004381 5.9e-36 154.8 119 73.1
Nitab4.5_0002891g0090 Nicotiana tabacum HOM05D004106 ORTHO05D004381 2.2e-35 152.9 164 55.5
Nitab4.5_0008875g0050 Nicotiana tabacum HOM05D004106 ORTHO05D004381 2.2e-35 152.9 164 55.5
FAN20G0773 Fragaria x ananassa HOM05D004106 ORTHO05D004381 2.9e-35 152.5 132 65.9
CBR_g54183 Chara braunii HOM05D004106 ORTHO05D004381 4.2e-34 148.7 103 72.8
Hma1.2p1_2680F.1_g326820 Hydrangea macrophylla HOM05D004106 ORTHO05D004381 9.4e-34 147.5 152 60.5
CBR_g728 Chara braunii HOM05D004106 ORTHO05D004381 8.0e-33 144.4 103 71.8
AagrBONN_evm.TU.Sc2ySwM_228.5744 Anthoceros agrestis HOM05D004106 ORTHO05D004381 2.3e-32 142.9 118 65.3
Thecc.09G028700 Theobroma cacao HOM05D004106 ORTHO05D004381 1.5e-31 140.2 151 57.6
Zm00001eb234060 Zea mays HOM05D004106 ORTHO05D004381 1.8e-29 133.3 140 59.3
PRCOL_00004350 Prasinoderma coloniale HOM05D004106 ORTHO05D004381 3.1e-29 132.5 105 62.9
Nn8g39925 Nelumbo nucifera HOM05D004106 ORTHO05D004381 1.2e-28 130.6 140 59.3
Rhsim07G0165600 Rhododendron simsii HOM05D004106 ORTHO05D004381 1.6e-28 130.2 292 34.9
Sc09g0010670 Simmondsia chinensis HOM05D004106 ORTHO05D004381 1.6e-28 130.2 157 54.8
BraA02t07117Z Brassica rapa HOM05D004106 ORTHO05D004381 4.2e-26 122.1 99 72.7
A02p20860 Brassica napus HOM05D004106 ORTHO05D004381 4.7e-25 118.6 94 73.4
C02p32810 Brassica napus HOM05D004106 ORTHO05D004381 1.8e-24 116.7 95 74.7
Cre10.g458550 Chlamydomonas reinhardtii HOM05D004106 ORTHO05D004381 5.2e-24 115.2 130 51.5
BcaC03g15698 Brassica carinata HOM05D004106 ORTHO05D004381 1.2e-23 114.0 95 73.7
BolC2t09418H Brassica oleracea HOM05D004106 ORTHO05D004381 1.2e-23 114.0 95 73.7
BcaB05g25007 Brassica carinata HOM05D004106 ORTHO05D004381 4.4e-23 112.1 87 73.6
Actinidia38669 Actinidia chinensis HOM05D004106 ORTHO05D004381 4.9e-22 108.6 120 58.3
QL02p018811 Quercus lobata HOM05D004106 ORTHO05D004381 8.0e-17 91.3 73 71.2
CARHR238490 Cardamine hirsuta HOM05D004106 ORTHO05D004381 1.8e-16 90.1 47 95.7
BcaB01g01386 Brassica carinata HOM05D004106 ORTHO05D005755 8.9e-16 87.8 49 89.8
Gohir.D07G031300 Gossypium hirsutum HOM05D004106 ORTHO05D004381 2.0e-15 86.7 71 69.0
Peaxi162Scf00387g00211 Petunia axillaris HOM05D004106 ORTHO05D004381 2.0e-12 76.6 86 53.5
SEGI_18679 Sequoiadendron giganteum HOM05D004106 ORTHO05D004381 1.3e-11 73.9 41 90.2
Lsat_1_v5_gn_7_47460 Lactuca sativa HOM05D004106 ORTHO05D002137 8.0e-09 64.7 38 84.2


User provided reference genes

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