Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C03p88160 Brassica napus HOM05D006099 ORTHO05D007317 1.5e-158 562.8 276 100.0
BolC3t21124H Brassica oleracea HOM05D006099 ORTHO05D007317 5.3e-156 554.3 276 98.9
BraA08t33839Z Brassica rapa HOM05D006099 ORTHO05D007317 2.0e-134 482.6 268 89.9
A08p18780 Brassica napus HOM05D006099 ORTHO05D007317 2.2e-130 469.2 292 82.5
Carub.0007s0938 Capsella rubella HOM05D006099 ORTHO05D007317 2.8e-125 452.2 259 86.5
Thhalv10025966m.g Eutrema salsugineum HOM05D006099 ORTHO05D007317 1.1e-124 450.3 268 82.8
Sp7g29030 Schrenkiella parvula HOM05D006099 ORTHO05D007317 4.5e-123 444.9 268 83.2
BcaB03g12683 Brassica carinata HOM05D006099 ORTHO05D007317 7.7e-123 444.1 240 92.1
AL7G20920 Arabidopsis lyrata HOM05D006099 ORTHO05D007317 5.0e-122 441.4 269 83.3
AT4G31150 Arabidopsis thaliana HOM05D006099 ORTHO05D007317 7.2e-121 437.6 268 82.5
Aa31LG2G19160 Aethionema arabicum HOM05D006099 ORTHO05D007317 1.4e-116 423.3 268 77.6
THA.LOC104803891 Tarenaya hassleriana HOM05D006099 ORTHO05D007317 1.2e-112 410.2 261 76.2
Ciclev10009104m.g Citrus clementina HOM05D006099 ORTHO05D007317 3.9e-90 335.5 258 64.0
Nn4g25135 Nelumbo nucifera HOM05D006099 ORTHO05D007317 3.9e-90 335.5 245 64.1
CSS0009505 Camellia sinensis var. sinensis HOM05D006099 ORTHO05D007317 1.2e-88 330.5 259 62.2
CANSAT25G1623 Cannabis sativa HOM05D006099 ORTHO05D007317 3.6e-88 328.9 269 61.3
Actinidia03572 Actinidia chinensis HOM05D006099 ORTHO05D007317 5.2e-87 325.1 256 60.5
Dinv37480 Davidia involucrata HOM05D006099 ORTHO05D007317 5.2e-87 325.1 250 62.0
FvH4_2g30570 Fragaria vesca HOM05D006099 ORTHO05D007317 5.2e-87 325.1 256 63.3
Lj7A751T33 Lonicera japonica HOM05D006099 ORTHO05D007317 1.2e-86 323.9 275 60.7
Cfa013234 Carpinus fangiana HOM05D006099 ORTHO05D007317 5.8e-86 321.6 252 60.7
GSVIVG01035588001 Vitis vinifera HOM05D006099 ORTHO05D007317 7.6e-86 321.2 258 60.9
Lj5g0025000 Lotus japonicus HOM05D006099 ORTHO05D007317 9.9e-86 320.9 247 62.8
Gohir.D05G068900 Gossypium hirsutum HOM05D006099 ORTHO05D007317 2.9e-85 319.3 259 59.8
Gorai.009G069800 Gossypium raimondii HOM05D006099 ORTHO05D007317 2.9e-85 319.3 259 59.8
Medtr1g010130 Medicago truncatula HOM05D006099 ORTHO05D007317 1.1e-84 317.4 258 61.2
Lalb_Chr24g0402361 Lupinus albus HOM05D006099 ORTHO05D007317 1.9e-84 316.6 254 60.6
CAN.G947.18 Capsicum annuum HOM05D006099 ORTHO05D007317 2.4e-84 316.2 249 59.8
Sed0006978 Sechium edule HOM05D006099 ORTHO05D007317 4.1e-84 315.5 271 60.1
Gohir.A05G066400 Gossypium hirsutum HOM05D006099 ORTHO05D007317 5.4e-84 315.1 258 59.3
CiPaw.07G216100 Carya illinoinensis HOM05D006099 ORTHO05D007317 7.1e-84 314.7 242 62.0
MD08G1132300 Malus domestica HOM05D006099 ORTHO05D007317 1.6e-83 313.5 271 59.4
Thecc.09G001300 Theobroma cacao HOM05D006099 ORTHO05D007317 2.7e-83 312.8 241 63.1
Ca_27927_v3 Cicer arietinum L. HOM05D006099 ORTHO05D007317 3.5e-83 312.4 249 61.0
VMungo0647G0711 Vigna mungo HOM05D006099 ORTHO05D007317 3.5e-83 312.4 252 59.9
Solyc12g096280.2 Solanum lycopersicum HOM05D006099 ORTHO05D007317 4.6e-83 312.0 253 60.1
Sopen12g032140 Solanum pennellii HOM05D006099 ORTHO05D007317 1.0e-82 310.8 241 61.4
CsaV3_2G031500 Cucumis sativus L. HOM05D006099 ORTHO05D007317 1.7e-82 310.1 254 61.8
Manes.15G141200 Manihot esculenta HOM05D006099 ORTHO05D007317 3.0e-82 309.3 263 55.9
Atru.chr7.2710 Acer truncatum HOM05D006099 ORTHO05D007317 3.9e-82 308.9 247 61.5
Cc00_g12770 Coffea canephora HOM05D006099 ORTHO05D007317 8.7e-82 307.8 259 60.6
Potri.018G001000 Populus trichocarpa HOM05D006099 ORTHO05D007317 8.7e-82 307.8 273 57.9
ATR0626G128 Amborella trichopoda HOM05D006099 ORTHO05D007317 1.1e-81 307.4 253 57.7
arahy.Tifrunner.gnm1.ann1.AEW87R Arachis hypogaea HOM05D006099 ORTHO05D007317 1.1e-81 307.4 259 59.5
Phvul.001G057000 Phaseolus vulgaris HOM05D006099 ORTHO05D007317 1.1e-81 307.4 256 58.6
Zm00001eb274410 Zea mays HOM05D006099 ORTHO05D007317 1.9e-81 306.6 245 61.2
Duzib168G0660 Durio zibethinus HOM05D006099 ORTHO05D007317 7.3e-81 304.7 273 55.7
AUR62020668 Chenopodium quinoa HOM05D006099 ORTHO05D007317 1.2e-80 303.9 263 60.1
ECA240G1547 Erigeron canadensis HOM05D006099 ORTHO05D007317 1.6e-80 303.5 243 62.1
Glyma.14G131200 Glycine max HOM05D006099 ORTHO05D007317 2.1e-80 303.1 243 62.1
PGR142G3206 Punica granatum HOM05D006099 ORTHO05D007317 3.6e-80 302.4 270 57.8
Rhsim07G0173500 Rhododendron simsii HOM05D006099 ORTHO05D007317 3.6e-80 302.4 283 56.2
Manes.15G141100 Manihot esculenta HOM05D006099 ORTHO05D007317 4.7e-80 302.0 249 59.0
Hma1.2p1_1615F.1_g293710 Hydrangea macrophylla HOM05D006099 ORTHO05D007317 4.0e-79 298.9 225 63.1
QL12p030693 Quercus lobata HOM05D006099 ORTHO05D007317 5.2e-79 298.5 262 58.4
Nitab4.5_0001159g0110 Nicotiana tabacum HOM05D006099 ORTHO05D007317 9.0e-79 297.7 283 53.0
PGSC0003DMG400029284 Solanum tuberosum HOM05D006099 ORTHO05D007317 2.6e-78 296.2 233 60.9
arahy.Tifrunner.gnm1.ann1.ZJIP4K Arachis hypogaea HOM05D006099 ORTHO05D007317 7.6e-78 294.7 238 59.7
PSO170G3285 Papaver somniferum HOM05D006099 ORTHO05D007317 7.6e-78 294.7 277 54.2
HanXRQChr13g0419861 Helianthus annuus HOM05D006099 ORTHO05D007317 1.7e-77 293.5 251 58.6
Lsat_1_v5_gn_3_111601 Lactuca sativa HOM05D006099 ORTHO05D007317 2.9e-77 292.7 259 58.3
FAN27G0146 Fragaria x ananassa HOM05D006099 ORTHO05D007317 4.9e-77 292.0 269 56.5
FAN15G2948 Fragaria x ananassa HOM05D006099 ORTHO05D007317 8.4e-77 291.2 269 56.1
Sc23g0004430 Simmondsia chinensis HOM05D006099 ORTHO05D007317 1.1e-76 290.8 265 55.1
ClCG08G012820 Citrullus lanatus HOM05D006099 ORTHO05D007317 1.9e-76 290.0 280 55.0
QL12p030880 Quercus lobata HOM05D006099 ORTHO05D007317 1.9e-76 290.0 287 53.7
MELO3C011207.2 Cucumis melo HOM05D006099 ORTHO05D007317 4.6e-75 285.4 260 57.7
Pp3c6_10670 Physcomitrium patens HOM05D006099 ORTHO05D007317 3.6e-72 275.8 257 52.5
RcHm_v2.0_Chr6g0312441 Rosa chinensis HOM05D006099 ORTHO05D007317 5.8e-70 268.5 246 56.5
Mapoly0013s0098 Marchantia polymorpha HOM05D006099 ORTHO05D007317 1.3e-69 267.3 249 52.2
SGA_v2.0_scaffold27G11694 Striga asiatica HOM05D006099 ORTHO05D007317 1.3e-69 267.3 266 53.0
Oeu035175.2 Olea europaea HOM05D006099 ORTHO05D007317 3.8e-69 265.8 229 55.9
EL10Ac2g03669 Beta vulgaris HOM05D006099 ORTHO05D007317 4.2e-68 262.3 248 56.0
DCAR_000694 Daucus carota HOM05D006099 ORTHO05D007317 5.4e-68 261.9 245 56.3
AagrBONN_evm.TU.Sc2ySwM_228.1579 Anthoceros agrestis HOM05D006099 ORTHO05D007317 1.2e-67 260.8 269 49.8
Cpa.g.sc148.13 Carica papaya HOM05D006099 ORTHO05D007317 1.2e-67 260.8 193 64.2
AUR62028064 Chenopodium quinoa HOM05D006099 ORTHO05D007317 1.6e-67 260.4 386 40.7
Sabra18G0005300 Salix brachista HOM05D002037 ORTHO05D002762 1.6e-67 260.4 267 53.9
BolC6t36631H Brassica oleracea HOM05D006099 ORTHO05D007317 7.9e-67 258.1 144 90.3
Hund03250 Selenicereus undatus HOM05D006099 ORTHO05D007317 7.9e-67 258.1 245 55.1
BcaC08g44050 Brassica carinata HOM05D006099 ORTHO05D007317 1.8e-66 256.9 144 90.3
Haze_21663 Corylus avellana HOM05D006099 ORTHO05D007317 2.3e-66 256.5 236 53.8
Eucgr.C02144 Eucalyptus grandis HOM05D006099 ORTHO05D007317 3.0e-66 256.1 251 53.0
BcaC04g20481 Brassica carinata HOM05D006099 ORTHO05D007317 1.1e-65 254.2 144 89.6
C09p43040 Brassica napus HOM05D006099 ORTHO05D007317 1.1e-65 254.2 144 89.6
CSS0007227 Camellia sinensis var. sinensis HOM05D006099 ORTHO05D007317 1.5e-65 253.8 201 61.2
SMO351G0465 Selaginella moellendorffii HOM05D006099 ORTHO05D007317 7.4e-65 251.5 242 49.2
PSO063G7181 Papaver somniferum HOM05D006099 ORTHO05D007317 1.2e-62 244.2 208 57.7
SalBow4G2099 Salvia bowleyana HOM05D006099 ORTHO05D007317 5.8e-62 241.9 254 50.0
Ah.11g044160 Amaranthus hybridus HOM05D006099 ORTHO05D007317 5.5e-60 235.3 247 48.6
TWI32G0633 Tripterygium wilfordii HOM05D006099 ORTHO05D007317 1.6e-59 233.8 214 55.6
CBR_g34340 Chara braunii HOM05D006099 ORTHO05D007317 2.5e-57 226.5 212 50.9
FAN24G0140 Fragaria x ananassa HOM05D006099 ORTHO05D007317 7.4e-57 224.9 207 57.0
MBI16_g00820_MAGBIO Magnolia biondii HOM05D006099 ORTHO05D007317 9.6e-57 224.6 238 51.3
C03p41630 Brassica napus HOM05D006099 ORTHO05D007317 1.4e-55 220.7 123 87.8
CARHR239060 Cardamine hirsuta HOM05D006099 ORTHO05D007317 3.4e-54 216.1 116 87.9
HanXRQChr13g0419831 Helianthus annuus HOM05D006099 ORTHO05D007317 3.4e-54 216.1 150 68.0
Hma1.2p1_1615F.1_g293700 Hydrangea macrophylla HOM05D006099 ORTHO05D007317 2.2e-53 213.4 210 52.9
FAN20G1258 Fragaria x ananassa HOM05D006099 ORTHO05D007317 3.2e-52 209.5 268 45.5
FAN20G1767 Fragaria x ananassa HOM05D006099 ORTHO05D007317 3.2e-52 209.5 268 45.5
Os06g0663600 Oryza sativa ssp. japonica HOM05D006099 ORTHO05D007317 7.1e-52 208.4 156 64.7
Sc23g0004790 Simmondsia chinensis HOM05D006099 ORTHO05D007317 9.7e-49 198.0 262 43.9
Zm00001eb274500 Zea mays HOM05D006099 ORTHO05D007317 3.1e-47 193.0 151 62.3
HPP92_011639 Vanilla planifolia HOM05D006099 ORTHO05D007317 4.1e-47 192.6 176 54.0
Zm00001eb274550 Zea mays HOM05D006099 ORTHO05D007317 6.5e-45 185.3 142 64.1
Peaxi162Scf00876g00025 Petunia axillaris HOM05D006099 ORTHO05D007317 1.1e-41 174.5 252 39.7
CDE06G2693 Ceratophyllum demersum HOM05D006099 ORTHO05D007317 1.1e-39 167.9 211 42.7
Zm00001eb442290 Zea mays HOM05D006099 ORTHO05D007317 1.4e-39 167.5 113 69.0
vmacro05090 Vaccinium macrocarpon HOM05D006099 ORTHO05D007317 1.8e-39 167.2 149 59.1
unitig_32.g10951 Utricularia gibba HOM05D006099 ORTHO05D007317 4.1e-39 166.0 125 60.0
RcHm_v2.0_Chr6g0312501 Rosa chinensis HOM05D006099 ORTHO05D007317 2.0e-38 163.7 189 48.1
Psat6g031520 Pisum sativum HOM05D006099 ORTHO05D007317 7.7e-38 161.8 133 61.7
MCO10G112 Micromonas commoda HOM05D006099 ORTHO05D007317 2.3e-34 150.2 281 37.0
Prupe.1G463600 Prunus persica HOM05D006099 ORTHO05D007317 2.2e-32 143.7 123 57.7
Nitab4.5_0001327g0030 Nicotiana tabacum HOM05D006099 ORTHO05D007317 5.9e-30 135.6 113 58.4
Cre07.g346100 Chlamydomonas reinhardtii HOM05D006099 ORTHO05D007317 2.7e-27 126.7 317 29.3
TAR626G0599 Trochodendron aralioides HOM05D006099 ORTHO05D007317 2.7e-27 126.7 238 36.1
Migut.A00464 Erythranthe guttata HOM05D006099 ORTHO05D007317 8.0e-27 125.2 131 48.9
TPR.G30957 Trifolium pratense HOM05D006099 ORTHO05D007317 2.6e-25 120.2 93 60.2
HPP92_011638 Vanilla planifolia HOM05D006099 ORTHO05D007317 1.0e-21 108.2 72 68.1
SHI15001 Sapria himalayana HOM05D006099 ORTHO05D007317 1.7e-21 107.5 101 54.5
Zm00001eb274520 Zea mays HOM05D006099 ORTHO05D007317 2.2e-21 107.1 97 54.6
TPR.G26527 Trifolium pratense HOM05D006099 ORTHO05D007317 1.9e-20 104.0 100 55.0
Migut.A00463 Erythranthe guttata HOM05D006099 ORTHO05D007317 4.2e-20 102.8 128 46.1
MSTRG.11825 Avicennia marina HOM05D006099 ORTHO05D007317 1.2e-19 101.3 103 50.5
SHI15000 Sapria himalayana HOM05D000105 ORTHO05D000023 2.7e-19 100.1 160 38.1
TPR.G3995 Trifolium pratense HOM05D006099 ORTHO05D007317 3.6e-19 99.8 56 80.4
HPP92_011640 Vanilla planifolia HOM05D006099 ORTHO05D007317 1.4e-18 97.8 86 53.5
unitig_32.g10950 Utricularia gibba HOM05D006099 ORTHO05D007317 8.8e-18 95.1 93 52.7
QL02p066379 Quercus lobata HOM05D006099 ORTHO05D007317 4.5e-14 82.8 62 64.5
CDE08G0278 Ceratophyllum demersum HOM05D006099 ORTHO05D007317 5.2e-10 69.3 71 45.1
SHI14999 Sapria himalayana HOM05D005377 ORTHO05D003034 4.8e-08 62.8 40 70.0


User provided reference genes

Program Settings