Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C03p87260 Brassica napus HOM05D005141 ORTHO05D006250 2.0e-203 712.2 360 100.0
BolC3t21027H Brassica oleracea HOM05D005141 ORTHO05D006250 5.8e-203 710.7 360 99.7
BcaC01g01013 Brassica carinata HOM05D005141 ORTHO05D006250 3.8e-194 681.4 360 96.9
BraA08t33764Z Brassica rapa HOM05D005141 ORTHO05D006250 7.3e-190 667.2 360 94.7
A08p18120 Brassica napus HOM05D005141 ORTHO05D006250 4.4e-187 657.9 356 94.7
Sp7g30350 Schrenkiella parvula HOM05D005141 ORTHO05D006250 2.5e-169 599.0 364 84.6
BcaB03g12752 Brassica carinata HOM05D005141 ORTHO05D006250 7.9e-168 594.0 364 85.2
Thhalv10025562m.g Eutrema salsugineum HOM05D005141 ORTHO05D006250 7.4e-166 587.4 361 83.9
Carub.0007s0798 Capsella rubella HOM05D005141 ORTHO05D006250 3.6e-152 542.0 361 79.2
AT4G32570 Arabidopsis thaliana HOM05D005141 ORTHO05D006250 5.1e-151 538.1 361 78.7
AL7G19190 Arabidopsis lyrata HOM05D005141 ORTHO05D006250 1.8e-140 503.1 331 79.8
C01p06380 Brassica napus HOM05D005141 ORTHO05D006250 8.0e-136 487.6 362 75.7
BraA01t00550Z Brassica rapa HOM05D005141 ORTHO05D006250 3.3e-134 482.3 362 75.4
A01p05810 Brassica napus HOM05D005141 ORTHO05D006250 2.2e-130 469.5 364 74.7
BolC1t00634H Brassica oleracea HOM05D005141 ORTHO05D006250 2.1e-128 463.0 361 73.1
BcaC09g52048 Brassica carinata HOM05D005141 ORTHO05D006250 1.5e-126 456.8 366 71.6
Aa31LG4G11720 Aethionema arabicum HOM05D005141 ORTHO05D006250 1.1e-113 414.1 359 62.4
THA.LOC104803820 Tarenaya hassleriana HOM05D005141 ORTHO05D006250 2.7e-83 313.2 365 55.3
C06p25010 Brassica napus HOM05D000698 ORTHO05D006250 1.3e-69 267.7 159 85.5
BcaC08g44885 Brassica carinata HOM05D005141 ORTHO05D006250 3.5e-67 259.6 221 65.6
A06p26660 Brassica napus HOM05D005141 ORTHO05D006250 3.6e-64 249.6 143 88.8
Potri.018G033700 Populus trichocarpa HOM05D005141 ORTHO05D006250 1.4e-52 211.1 409 39.6
Thecc.09G145300 Theobroma cacao HOM05D005141 ORTHO05D006250 1.5e-49 201.1 419 39.9
Sabra18G0034600 Salix brachista HOM05D005141 ORTHO05D006250 1.9e-49 200.7 408 38.5
MD08G1137500 Malus domestica HOM05D005141 ORTHO05D006250 5.7e-49 199.1 416 37.3
Prupe.1G467500 Prunus persica HOM05D005141 ORTHO05D006250 7.4e-49 198.7 412 37.6
RcHm_v2.0_Chr6g0312851 Rosa chinensis HOM05D005141 ORTHO05D006250 1.3e-48 198.0 438 37.0
Manes.03G065500 Manihot esculenta HOM05D005141 ORTHO05D006250 6.3e-48 195.7 331 41.1
Duzib168G0094 Durio zibethinus HOM05D005141 ORTHO05D006250 1.8e-47 194.1 431 38.7
Phvul.009G097300 Phaseolus vulgaris HOM05D005141 ORTHO05D006250 2.4e-47 193.7 402 37.8
MD15G1116100 Malus domestica HOM05D005141 ORTHO05D006250 3.1e-47 193.4 422 36.5
VMungo1309G3073 Vigna mungo HOM05D005141 ORTHO05D006250 6.9e-47 192.2 402 36.8
Cfa021484 Carpinus fangiana HOM05D005141 ORTHO05D006250 1.2e-46 191.4 412 37.4
Gorai.009G011200 Gossypium raimondii HOM05D005141 ORTHO05D006250 2.6e-46 190.3 337 40.7
FAN24G3348 Fragaria x ananassa HOM05D005141 ORTHO05D006250 3.4e-46 189.9 412 36.7
Gohir.D05G010800 Gossypium hirsutum HOM05D005141 ORTHO05D006250 3.4e-46 189.9 307 44.3
Haze_21614 Corylus avellana HOM05D005141 ORTHO05D006250 7.6e-46 188.7 382 38.5
Duzib187G0541 Durio zibethinus HOM05D005141 ORTHO05D006250 7.6e-46 188.7 414 39.1
FAN27G2430 Fragaria x ananassa HOM05D005141 ORTHO05D006250 7.6e-46 188.7 421 36.8
Sabra06G0193700 Salix brachista HOM05D005141 ORTHO05D006250 7.6e-46 188.7 417 38.4
CiPaw.07G218200 Carya illinoinensis HOM05D005141 ORTHO05D006250 1.0e-45 188.3 435 37.7
FAN15G0409 Fragaria x ananassa HOM05D005141 ORTHO05D006250 1.3e-45 188.0 414 36.2
Gohir.A05G010100 Gossypium hirsutum HOM05D005141 ORTHO05D006250 2.2e-45 187.2 317 43.5
CiPaw.08G014900 Carya illinoinensis HOM05D005141 ORTHO05D006250 3.8e-45 186.4 434 36.4
C07p35200 Brassica napus HOM05D005141 ORTHO05D006250 5.0e-45 186.0 107 87.9
BolC7t44052H Brassica oleracea HOM05D005141 ORTHO05D006250 5.0e-45 186.0 107 87.9
Ca_15703_v3 Cicer arietinum L. HOM05D005141 ORTHO05D006250 6.5e-45 185.7 408 36.8
Ciclev10008356m.g Citrus clementina HOM05D005141 ORTHO05D006250 1.1e-44 184.9 427 35.6
Manes.16G067800 Manihot esculenta HOM05D005141 ORTHO05D006250 1.4e-44 184.5 424 37.5
Lj1g0018494 Lotus japonicus HOM05D005141 ORTHO05D006250 2.5e-44 183.7 432 35.9
FAN20G1096 Fragaria x ananassa HOM05D005141 ORTHO05D006250 3.2e-44 183.3 415 36.9
QL12p031441 Quercus lobata HOM05D005141 ORTHO05D006250 5.5e-44 182.6 415 36.9
Glyma.06G072700 Glycine max HOM05D005141 ORTHO05D006250 9.3e-44 181.8 403 35.2
Atru.chr7.2334 Acer truncatum HOM05D005141 ORTHO05D006250 4.6e-43 179.5 324 40.7
TWI32G0021 Tripterygium wilfordii HOM05D005141 ORTHO05D006250 1.8e-42 177.6 421 37.3
Glyma.04G071400 Glycine max HOM05D005141 ORTHO05D006250 5.1e-42 176.0 415 35.2
CANSAT25G3062 Cannabis sativa HOM05D005141 ORTHO05D006250 1.1e-41 174.9 407 35.6
Dinv30204 Davidia involucrata HOM05D005141 ORTHO05D006250 1.5e-41 174.5 413 36.6
GSVIVG01035797001 Vitis vinifera HOM05D005141 ORTHO05D006250 9.7e-41 171.8 418 36.4
Duzib150G1154 Durio zibethinus HOM05D005141 ORTHO05D006250 1.3e-40 171.4 479 35.1
Medtr3g107950 Medicago truncatula HOM05D005141 ORTHO05D006250 1.6e-40 171.0 405 35.6
TPR.G34685 Trifolium pratense HOM05D005141 ORTHO05D006250 2.8e-40 170.2 413 35.8
TWI34G0135 Tripterygium wilfordii HOM05D005141 ORTHO05D006250 1.1e-39 168.3 352 38.4
Potri.006G247500 Populus trichocarpa HOM05D005141 ORTHO05D006250 1.4e-39 167.9 305 40.7
Hma1.2p1_0175F.1_g077130 Hydrangea macrophylla HOM05D005141 ORTHO05D006250 4.1e-39 166.4 428 34.3
PSO063G0687 Papaver somniferum HOM05D005141 ORTHO05D006250 9.0e-39 165.2 320 38.1
arahy.Tifrunner.gnm1.ann1.WUI646 Arachis hypogaea HOM05D005141 ORTHO05D006250 2.0e-38 164.1 321 38.0
Lj7A714G44 Lonicera japonica HOM05D005141 ORTHO05D006250 2.6e-38 163.7 351 36.2
Lalb_Chr23g0268881 Lupinus albus HOM05D005141 ORTHO05D006250 4.5e-38 162.9 415 34.7
TAR626G1320 Trochodendron aralioides HOM05D005141 ORTHO05D006250 4.5e-38 162.9 445 33.7
Nn2g11855 Nelumbo nucifera HOM05D005141 ORTHO05D006250 1.0e-37 161.8 431 33.4
Lsat_1_v5_gn_1_43100 Lactuca sativa HOM05D005141 ORTHO05D006250 2.9e-37 160.2 323 38.1
TAR636G0300 Trochodendron aralioides HOM05D005141 ORTHO05D006250 5.0e-37 159.5 437 33.2
Lalb_Chr08g0243831 Lupinus albus HOM05D005141 ORTHO05D006250 6.5e-37 159.1 395 35.2
Cpa.g.sc91.20 Carica papaya HOM05D005141 ORTHO05D006250 1.9e-36 157.5 306 39.5
Eucgr.C01809 Eucalyptus grandis HOM05D005141 ORTHO05D006250 2.5e-36 157.1 353 37.4
CAN.G199.28 Capsicum annuum HOM05D005141 ORTHO05D006250 3.2e-36 156.8 356 38.8
Sopen06g024010 Solanum pennellii HOM05D005141 ORTHO05D006250 3.2e-36 156.8 366 37.2
Nitab4.5_0005873g0030 Nicotiana tabacum HOM05D005141 ORTHO05D006250 1.2e-35 154.8 321 38.6
Nitab4.5_0011669g0010 Nicotiana tabacum HOM05D005141 ORTHO05D006250 2.7e-35 153.7 321 37.7
Solyc06g065650.3 Solanum lycopersicum HOM05D005141 ORTHO05D006250 3.6e-35 153.3 366 36.9
vmacro11124 Vaccinium macrocarpon HOM05D005141 ORTHO05D006250 6.1e-35 152.5 343 37.0
PSO782G1260 Papaver somniferum HOM05D005141 ORTHO05D006250 1.4e-34 151.4 355 34.1
PGSC0003DMG400026089 Solanum tuberosum HOM05D005141 ORTHO05D006250 1.8e-34 151.0 361 37.7
ClCG05G017130 Citrullus lanatus HOM05D005141 ORTHO05D006250 3.0e-34 150.2 329 35.3
HanXRQChr13g0402161 Helianthus annuus HOM05D005141 ORTHO05D006250 6.7e-34 149.1 258 41.1
TAR383G0458 Trochodendron aralioides HOM05D005141 ORTHO05D006250 6.7e-34 149.1 413 34.4
FvH4_2g30050 Fragaria vesca HOM05D005141 ORTHO05D006250 8.8e-34 148.7 307 37.8
MELO3C003675.2 Cucumis melo HOM05D005141 ORTHO05D006250 1.1e-33 148.3 329 35.3
CsaV3_3G046630 Cucumis sativus L. HOM05D005141 ORTHO05D006250 1.1e-33 148.3 329 35.3
COL.COLO4_24046 Corchorus olitorius HOM05D005141 ORTHO05D006250 2.0e-33 147.5 273 41.8
Actinidia13429 Actinidia chinensis HOM05D005141 ORTHO05D006250 2.5e-33 147.1 377 36.3
Sed0008448 Sechium edule HOM05D005141 ORTHO05D006250 2.5e-33 147.1 317 36.3
ECA233G0036 Erigeron canadensis HOM05D005141 ORTHO05D006250 3.3e-33 146.7 308 38.3
ClCG08G012940 Citrullus lanatus HOM05D005141 ORTHO05D006250 7.4e-33 145.6 332 37.0
arahy.Tifrunner.gnm1.ann1.29TRSQ Arachis hypogaea HOM05D005141 ORTHO05D006250 1.3e-32 144.8 359 34.5
HanXRQChr02g0050641 Helianthus annuus HOM05D005141 ORTHO05D006250 2.8e-32 143.7 349 36.1
BolC9t58511H Brassica oleracea HOM05D005141 ORTHO05D006250 3.7e-32 143.3 76 90.8
DCAR_022871 Daucus carota HOM05D005141 ORTHO05D006250 3.7e-32 143.3 433 33.0
EL10Ac2g02550 Beta vulgaris HOM05D005141 ORTHO05D006250 1.1e-31 141.7 327 36.4
Phvul.001G055100 Phaseolus vulgaris HOM05D005141 ORTHO05D006250 1.5e-30 137.9 366 34.4
Cc08_g08010 Coffea canephora HOM05D005141 ORTHO05D006250 2.0e-30 137.5 341 35.2
MSTRG.25868 Avicennia marina HOM05D005141 ORTHO05D006250 4.5e-30 136.3 331 35.0
Peaxi162Scf00545g00034 Petunia axillaris HOM05D005141 ORTHO05D006250 7.7e-30 135.6 389 33.4
Lsat_1_v5_gn_6_22941 Lactuca sativa HOM05D005141 ORTHO05D006250 1.0e-29 135.2 327 35.2
Sed0000645 Sechium edule HOM05D005141 ORTHO05D006250 1.0e-29 135.2 449 31.4
PGR031G2456 Punica granatum HOM05D005141 ORTHO05D006250 8.5e-29 132.1 297 37.4
AUR62024850 Chenopodium quinoa HOM05D005141 ORTHO05D006250 1.4e-28 131.3 265 38.1
Migut.A00282 Erythranthe guttata HOM05D005141 ORTHO05D006250 2.5e-28 130.6 312 36.2
Nn8g39307 Nelumbo nucifera HOM05D005141 ORTHO05D006250 2.5e-28 130.6 329 33.7
SalBow4G0713 Salvia bowleyana HOM05D005141 ORTHO05D006250 3.2e-28 130.2 294 36.1
MELO3C011217.2 Cucumis melo HOM05D005141 ORTHO05D006250 4.2e-28 129.8 452 30.8
Dinv11587 Davidia involucrata HOM05D005141 ORTHO05D006250 4.2e-28 129.8 234 39.7
Rhsim02G0188600 Rhododendron simsii HOM05D005141 ORTHO05D006250 9.4e-28 128.6 329 35.6
Oeu032487.3 Olea europaea HOM05D005141 ORTHO05D006250 1.2e-27 128.3 313 33.9
CARHR240540 Cardamine hirsuta HOM05D005141 ORTHO05D006250 1.6e-27 127.9 78 83.3
MBI04_g39529_MAGBIO Magnolia biondii HOM05D005141 ORTHO05D006250 3.6e-27 126.7 331 34.7
SHI18604 Sapria himalayana HOM05D005141 ORTHO05D006250 1.8e-26 124.4 266 38.3
Psat0s1782g0240 Pisum sativum HOM05D005141 ORTHO05D006250 6.7e-26 122.5 250 36.4
Actinidia13280 Actinidia chinensis HOM05D005141 ORTHO05D006250 2.0e-25 120.9 175 46.3
CsaV3_2G031660 Cucumis sativus L. HOM05D005141 ORTHO05D006250 1.3e-24 118.2 218 39.4
Oeu014659.3 Olea europaea HOM05D005141 ORTHO05D006250 1.1e-23 115.2 307 32.9
SGA_v2.0_scaffold27G11478 Striga asiatica HOM05D005141 ORTHO05D006250 7.0e-23 112.5 376 31.6
MBI01_g37337_MAGBIO Magnolia biondii HOM05D005141 ORTHO05D006250 1.2e-22 111.7 317 33.8
CARHR240550 Cardamine hirsuta HOM05D005141 ORTHO05D006250 1.2e-19 101.7 60 81.7
unitig_37.g12225 Utricularia gibba HOM05D005141 ORTHO05D006250 1.6e-19 101.3 296 34.1
ATR0083G007 Amborella trichopoda HOM05D005141 ORTHO05D006250 2.1e-19 100.9 352 31.5
unitig_46.g18533 Utricularia gibba HOM05D005141 ORTHO05D006250 3.3e-17 93.6 213 36.6
AagrBONN_evm.TU.Sc2ySwM_117.408 Anthoceros agrestis HOM05D005141 ORTHO05D006250 6.3e-16 89.4 143 42.0
HPP92_009098 Vanilla planifolia HOM05D005141 ORTHO05D006250 6.3e-16 89.4 190 37.4
Glyma.17G205200 Glycine max HOM05D005141 ORTHO05D006250 4.1e-15 86.7 142 40.1
Pp3c19_8700 Physcomitrium patens HOM05D005141 ORTHO05D006250 5.3e-15 86.3 139 42.4
Pp3c22_12420 Physcomitrium patens HOM05D005141 ORTHO05D006250 4.5e-14 83.2 135 40.7
SMO143G0273 Selaginella moellendorffii HOM05D005141 ORTHO05D006250 2.9e-13 80.5 119 42.0
SEGI_18535 Sequoiadendron giganteum HOM05D005141 ORTHO05D006250 1.9e-12 77.8 188 34.6
Mapoly0079s0053 Marchantia polymorpha HOM05D005141 ORTHO05D006250 2.5e-12 77.4 164 36.0
Aqoxy7G01897 Aquilegia oxysepala HOM05D005141 ORTHO05D006250 1.6e-11 74.7 255 31.8
Aqoxy81s001 Aquilegia oxysepala HOM05D005141 ORTHO05D006250 2.7e-11 73.9 68 57.4
CSS0000568 Camellia sinensis var. sinensis HOM05D005141 ORTHO05D006250 1.5e-09 68.2 113 43.4
Ah.10g025860 Amaranthus hybridus HOM05D005141 ORTHO05D006250 5.7e-09 66.2 158 32.3
Haze_10527 Corylus avellana HOM05D005141 ORTHO05D006250 4.1e-07 60.1 91 36.3
ClCG04G010520 Citrullus lanatus HOM05D002346 ORTHO05D002452 3.5e-06 57.0 123 31.7


User provided reference genes

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