Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C03p86150 Brassica napus HOM05D006107 ORTHO05D007455 0.0e+00 1174.1 585 100.0
BcaC01g00937 Brassica carinata HOM05D006107 ORTHO05D007455 0.0e+00 1167.5 585 99.3
BolC3t20903H Brassica oleracea HOM05D006107 ORTHO05D007455 0.0e+00 1165.2 585 99.1
A08p17180 Brassica napus HOM05D006107 ORTHO05D007455 0.0e+00 1129.4 588 96.8
BraA08t33679Z Brassica rapa HOM05D006107 ORTHO05D007455 0.0e+00 1125.2 588 96.3
BcaB03g11861 Brassica carinata HOM05D006107 ORTHO05D007455 0.0e+00 1108.6 588 94.6
Sp7g31760 Schrenkiella parvula HOM05D006107 ORTHO05D007455 0.0e+00 1100.1 588 92.3
Thhalv10024753m.g Eutrema salsugineum HOM05D006107 ORTHO05D007455 0.0e+00 1095.5 588 92.3
AT4G34030 Arabidopsis thaliana HOM05D006107 ORTHO05D007455 0.0e+00 1095.1 588 91.8
AL7G17360 Arabidopsis lyrata HOM05D006107 ORTHO05D007455 0.0e+00 1089.3 588 91.8
Carub.0007s0637 Capsella rubella HOM05D006107 ORTHO05D007455 0.0e+00 1088.6 588 91.2
A03p62570 Brassica napus HOM05D006107 ORTHO05D007455 0.0e+00 1077.8 589 91.7
BolC7t46453H Brassica oleracea HOM05D006107 ORTHO05D007455 0.0e+00 1077.4 589 91.0
C07p60130 Brassica napus HOM05D006107 ORTHO05D007455 0.0e+00 1075.8 589 91.0
THA.LOC104807265 Tarenaya hassleriana HOM05D006107 ORTHO05D007455 5.5e-304 1047.0 586 88.7
Aa31LG2G16450 Aethionema arabicum HOM05D006107 ORTHO05D007455 1.1e-299 1032.7 589 87.3
BcaNung03357 Brassica carinata HOM05D006107 ORTHO05D007455 4.5e-298 1027.3 589 87.4
Thecc.02G102000 Theobroma cacao HOM05D006107 ORTHO05D007455 7.0e-275 950.3 589 79.3
Potri.009G100800 Populus trichocarpa HOM05D006107 ORTHO05D007455 9.2e-275 949.9 586 79.2
Sabra09G0076700 Salix brachista HOM05D006107 ORTHO05D007455 6.0e-274 947.2 585 79.1
TWI31G1484 Tripterygium wilfordii HOM05D006107 ORTHO05D007455 7.8e-274 946.8 587 78.7
Gohir.A12G023600 Gossypium hirsutum HOM05D006107 ORTHO05D007455 2.3e-273 945.3 553 82.1
Gohir.D12G024200 Gossypium hirsutum HOM05D006107 ORTHO05D007455 5.0e-273 944.1 586 79.0
Gorai.008G024600 Gossypium raimondii HOM05D006107 ORTHO05D007455 6.6e-273 943.7 586 79.2
Duzib132G0557 Durio zibethinus HOM05D006107 ORTHO05D007455 3.3e-272 941.4 586 78.5
PGR042G0079 Punica granatum HOM05D006107 ORTHO05D007455 1.2e-271 939.5 586 79.2
Atru.chr5.2684 Acer truncatum HOM05D006107 ORTHO05D007455 3.1e-270 934.9 552 81.0
Sed0010263 Sechium edule HOM05D006107 ORTHO05D007455 5.2e-270 934.1 585 78.3
GSVIVG01031728001 Vitis vinifera HOM05D006107 ORTHO05D007455 1.5e-269 932.6 587 78.0
CsaV3_7G008530 Cucumis sativus L. HOM05D006107 ORTHO05D007455 4.4e-269 931.0 585 77.6
FAN20G2345 Fragaria x ananassa HOM05D006107 ORTHO05D007455 4.4e-269 931.0 585 77.9
RcHm_v2.0_Chr6g0257681 Rosa chinensis HOM05D006107 ORTHO05D007455 7.5e-269 930.2 585 77.6
FAN15G1599 Fragaria x ananassa HOM05D006107 ORTHO05D007455 1.7e-268 929.1 585 77.9
FvH4_2g05870 Fragaria vesca HOM05D006107 ORTHO05D007455 1.9e-267 925.6 585 77.8
arahy.Tifrunner.gnm1.ann1.Q9TTL4 Arachis hypogaea HOM05D006107 ORTHO05D007455 2.4e-267 925.2 547 80.4
QL11p035424 Quercus lobata HOM05D006107 ORTHO05D007455 3.2e-267 924.9 586 77.0
Rhsim05G0085900 Rhododendron simsii HOM05D006107 ORTHO05D007455 3.2e-267 924.9 585 76.9
Hma1.2p1_0474F.1_g160480 Hydrangea macrophylla HOM05D006107 ORTHO05D007455 4.1e-267 924.5 546 80.4
Eucgr.G01434 Eucalyptus grandis HOM05D006107 ORTHO05D007455 1.6e-266 922.5 585 76.6
FAN24G1318 Fragaria x ananassa HOM05D006107 ORTHO05D007455 4.6e-266 921.0 585 77.4
Lalb_Chr16g0384781 Lupinus albus HOM05D006107 ORTHO05D007455 1.0e-265 919.8 547 79.5
Prupe.8G126800 Prunus persica HOM05D006107 ORTHO05D007455 1.7e-265 919.1 547 81.0
MD05G1082300 Malus domestica HOM05D006107 ORTHO05D007455 2.3e-265 918.7 546 81.1
Ciclev10028103m.g Citrus clementina HOM05D006107 ORTHO05D007455 3.9e-265 917.9 542 81.0
Lj4g0016203 Lotus japonicus HOM05D006107 ORTHO05D007455 9.5e-264 913.3 547 80.1
Lj5A210T89 Lonicera japonica HOM05D006107 ORTHO05D007455 1.6e-263 912.5 588 76.5
ClCG02G006000 Citrullus lanatus HOM05D006107 ORTHO05D007455 2.8e-263 911.8 620 73.1
CARHR242170 Cardamine hirsuta HOM05D006107 ORTHO05D007455 3.6e-263 911.4 468 95.1
CSS0002619 Camellia sinensis var. sinensis HOM05D006107 ORTHO05D007455 1.8e-262 909.1 547 79.7
CSS0005791 Camellia sinensis var. sinensis HOM05D006107 ORTHO05D007455 2.3e-262 908.7 547 79.7
TAR376G0662 Trochodendron aralioides HOM05D006107 ORTHO05D007455 2.3e-262 908.7 586 76.3
MBI03_g13479_MAGBIO Magnolia biondii HOM05D006107 ORTHO05D007455 4.0e-262 907.9 586 75.4
Psat7g125400 Pisum sativum HOM05D006107 ORTHO05D007455 8.9e-262 906.7 548 78.3
Medtr4g085890 Medicago truncatula HOM05D006107 ORTHO05D007455 1.3e-260 902.9 548 78.6
RcHm_v2.0_Chr6g0257701 Rosa chinensis HOM05D006107 ORTHO05D007455 1.3e-260 902.9 548 78.6
SGA_v2.0_scaffold90G27632 Striga asiatica HOM05D006107 ORTHO05D007455 2.9e-260 901.7 585 75.2
Glyma.07G213500 Glycine max HOM05D006107 ORTHO05D007455 3.8e-260 901.4 527 81.8
Glyma.02G131500 Glycine max HOM05D006107 ORTHO05D007455 2.4e-259 898.7 522 82.4
CANSAT25G2960 Cannabis sativa HOM05D006107 ORTHO05D007455 3.2e-259 898.3 546 79.7
PSO675G2583 Papaver somniferum HOM05D006107 ORTHO05D007455 4.1e-259 897.9 586 75.3
Hund06173 Selenicereus undatus HOM05D006107 ORTHO05D007455 4.1e-259 897.9 548 77.9
Phvul.003G291600 Phaseolus vulgaris HOM05D006107 ORTHO05D007455 7.1e-259 897.1 522 82.2
PSO541G4551 Papaver somniferum HOM05D006107 ORTHO05D007455 2.7e-258 895.2 587 75.6
arahy.Tifrunner.gnm1.ann1.H5D5IL Arachis hypogaea HOM05D006107 ORTHO05D007455 6.0e-258 894.0 573 75.7
COL.COLO4_32644 Corchorus olitorius HOM05D006107 ORTHO05D007455 7.8e-258 893.6 586 75.8
VMungo0251G2128 Vigna mungo HOM05D006107 ORTHO05D007455 1.0e-257 893.3 525 81.1
HPP92_004071 Vanilla planifolia HOM05D006107 ORTHO05D007455 1.7e-257 892.5 544 78.7
Aqoxy6G01306 Aquilegia oxysepala HOM05D006107 ORTHO05D007455 2.3e-257 892.1 585 72.8
TPR.G12695 Trifolium pratense HOM05D006107 ORTHO05D007455 2.3e-257 892.1 522 80.8
Ca_18695_v3 Cicer arietinum L. HOM05D006107 ORTHO05D007455 5.1e-257 891.0 521 80.8
Migut.B00356 Erythranthe guttata HOM05D006107 ORTHO05D007455 2.5e-256 888.6 566 77.0
EL10Ac1g02230 Beta vulgaris HOM05D006107 ORTHO05D007455 4.3e-256 887.9 585 72.8
HanXRQChr11g0331361 Helianthus annuus HOM05D006107 ORTHO05D007455 9.6e-256 886.7 540 78.3
Haze_10087 Corylus avellana HOM05D006107 ORTHO05D007455 1.2e-255 886.3 585 74.7
Peaxi162Scf00016g01935 Petunia axillaris HOM05D006107 ORTHO05D007455 1.2e-255 886.3 542 78.4
SalBow6G1673 Salvia bowleyana HOM05D006107 ORTHO05D007455 2.8e-255 885.2 586 75.3
ECA236G2832 Erigeron canadensis HOM05D006107 ORTHO05D007455 2.4e-254 882.1 541 78.0
AUR62035403 Chenopodium quinoa HOM05D006107 ORTHO05D007455 1.3e-252 876.3 602 70.9
Cfa004529 Carpinus fangiana HOM05D006107 ORTHO05D007455 2.9e-252 875.2 508 82.9
Sc18g0004170 Simmondsia chinensis HOM05D006107 ORTHO05D007455 2.9e-252 875.2 546 76.4
vmacro19505 Vaccinium macrocarpon HOM05D006107 ORTHO05D007455 1.4e-251 872.8 688 65.3
Cc02_g18880 Coffea canephora HOM05D006107 ORTHO05D007455 1.6e-250 869.4 521 80.4
Lsat_1_v5_gn_7_86820 Lactuca sativa HOM05D006107 ORTHO05D007455 6.0e-250 867.5 535 77.9
Zm00001eb179170 Zea mays HOM05D006107 ORTHO05D007455 1.1e-248 863.2 579 73.1
CAN.G1041.37 Capsicum annuum HOM05D006107 ORTHO05D007455 2.5e-248 862.1 542 76.4
Solyc01g108030.4 Solanum lycopersicum HOM05D006107 ORTHO05D007455 3.3e-248 861.7 541 76.2
Sopen01g050230 Solanum pennellii HOM05D006107 ORTHO05D007455 5.6e-248 860.9 541 76.0
Nitab4.5_0018866g0010 Nicotiana tabacum HOM05D006107 ORTHO05D007455 9.6e-248 860.1 598 71.4
DCAR_001629 Daucus carota HOM05D006107 ORTHO05D007455 5.3e-246 854.4 522 78.9
ATR1126G046 Amborella trichopoda HOM05D006107 ORTHO05D007455 1.7e-244 849.4 544 74.4
CDE10G1185 Ceratophyllum demersum HOM05D006107 ORTHO05D007455 2.2e-244 849.0 546 75.6
PGSC0003DMG400025888 Solanum tuberosum HOM05D006107 ORTHO05D007455 3.2e-243 845.1 521 77.7
Dinv42164 Davidia involucrata HOM05D006107 ORTHO05D007455 4.8e-239 831.2 580 71.6
Nitab4.5_0001428g0130 Nicotiana tabacum HOM05D006107 ORTHO05D007455 1.8e-238 829.3 542 73.8
unitig_21.g20740 Utricularia gibba HOM05D006107 ORTHO05D007455 3.2e-235 818.5 555 73.0
Cpa.g.sc62.2 Carica papaya HOM05D006107 ORTHO05D007455 2.1e-234 815.8 498 79.7
Pp3c3_22750 Physcomitrium patens HOM05D006107 ORTHO05D007455 2.8e-231 805.4 542 71.2
Mapoly0009s0150 Marchantia polymorpha HOM05D006107 ORTHO05D007455 2.4e-230 802.4 573 68.1
MELO3C018456.2 Cucumis melo HOM05D006107 ORTHO05D007455 6.9e-230 800.8 504 78.2
FAN27G3033 Fragaria x ananassa HOM05D006107 ORTHO05D007455 7.6e-229 797.3 521 75.6
Nn5g30280 Nelumbo nucifera HOM05D006107 ORTHO05D007455 1.6e-226 789.6 468 80.8
Oeu007292.2 Olea europaea HOM05D006107 ORTHO05D007455 4.6e-226 788.1 469 80.4
AagrBONN_evm.TU.Sc2ySwM_368.3420 Anthoceros agrestis HOM05D006107 ORTHO05D007455 7.4e-224 780.8 549 68.3
CiPaw.05G007100 Carya illinoinensis HOM05D006107 ORTHO05D007455 4.6e-218 761.5 439 82.9
Manes.07G078100 Manihot esculenta HOM05D006107 ORTHO05D007455 1.0e-217 760.4 443 83.1
HPP92_004116 Vanilla planifolia HOM05D006107 ORTHO05D007455 2.5e-216 755.7 544 69.1
SEGI_09747 Sequoiadendron giganteum HOM05D006107 ORTHO05D007455 3.4e-213 745.3 468 77.4
SMO174G0062 Selaginella moellendorffii HOM05D006107 ORTHO05D007455 1.8e-201 706.4 542 63.8
Cre03.g181200 Chlamydomonas reinhardtii HOM05D006107 ORTHO05D007455 5.7e-192 674.9 544 60.1
AUR62041887 Chenopodium quinoa HOM05D006107 ORTHO05D007455 6.1e-186 654.8 464 68.8
Haze_26655 Corylus avellana HOM05D006107 ORTHO05D007455 2.7e-173 612.8 552 55.6
Actinidia17868 Actinidia chinensis HOM05D006107 ORTHO05D007455 4.5e-173 612.1 585 56.6
PRCOL_00006414 Prasinoderma coloniale HOM05D006107 ORTHO05D007455 5.8e-168 595.1 534 56.9
Haze_27116 Corylus avellana HOM05D006107 ORTHO05D007455 6.8e-153 545.0 461 57.9
Haze_27030 Corylus avellana HOM05D006107 ORTHO05D007455 1.6e-149 533.9 523 53.2
Ah.00g000150 Amaranthus hybridus HOM05D006107 ORTHO05D007455 9.6e-139 498.0 332 72.9
Hma1.2p1_0474F.1_g160470 Hydrangea macrophylla HOM05D006107 ORTHO05D007455 6.4e-127 458.8 259 83.4
Haze_26656 Corylus avellana HOM05D006107 ORTHO05D007455 2.6e-88 330.5 254 63.4
QL11p035444 Quercus lobata HOM05D006107 ORTHO05D007455 2.3e-76 290.8 158 84.8
CBR_g54985 Chara braunii HOM05D006107 ORTHO05D007455 1.1e-57 228.8 490 31.0
CARHR242160 Cardamine hirsuta HOM05D006107 ORTHO05D007455 9.8e-43 179.1 122 76.2
Medtr3g011860 Medicago truncatula HOM05D006107 ORTHO05D007455 1.4e-36 158.7 208 45.2
QL11p035447 Quercus lobata HOM05D006107 ORTHO05D007455 7.8e-32 142.9 90 76.7
Cfa025742 Carpinus fangiana HOM05D006107 ORTHO05D007455 3.2e-25 120.9 538 22.9
QL11p035449 Quercus lobata HOM05D006107 ORTHO05D007455 4.0e-20 104.0 65 69.2
SEGI_09117 Sequoiadendron giganteum HOM05D006107 ORTHO05D007455 2.4e-17 94.7 76 60.5
CDE05G3043 Ceratophyllum demersum HOM05D003397 ORTHO05D004390 5.1e-07 60.5 378 23.0
Solyc01g108060.2 Solanum lycopersicum HOM05D006107 ORTHO05D007455 1.1e-06 59.3 30 86.7
Cfa022865 Carpinus fangiana HOM05D003397 ORTHO05D004390 9.6e-06 56.2 385 22.9


User provided reference genes

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