Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C03p85580 Brassica napus HOM05D005368 ORTHO05D006417 8.3e-66 253.4 118 100.0
BcaC01g00883 Brassica carinata HOM05D005368 ORTHO05D006417 1.0e-63 246.5 117 98.3
BcaB03g11818 Brassica carinata HOM05D005368 ORTHO05D006417 1.5e-62 242.7 118 96.6
A08p16660 Brassica napus HOM05D005368 ORTHO05D006417 1.5e-62 242.7 118 96.6
BcaNung07080 Brassica carinata HOM05D005368 ORTHO05D006417 5.6e-62 240.7 118 95.8
A03p63090 Brassica napus HOM05D005368 ORTHO05D006417 5.6e-62 240.7 118 95.8
BolC7t46501H Brassica oleracea HOM05D005368 ORTHO05D006417 5.6e-62 240.7 118 95.8
BraA03t15384Z Brassica rapa HOM05D005368 ORTHO05D006417 5.6e-62 240.7 118 95.8
BcaNung00672 Brassica carinata HOM05D005368 ORTHO05D006417 9.5e-62 240.0 118 94.9
BcaNung00675 Brassica carinata HOM05D005368 ORTHO05D006417 9.5e-62 240.0 118 94.9
A01p03810 Brassica napus HOM05D005368 ORTHO05D006417 9.5e-62 240.0 118 94.9
C01p04120 Brassica napus HOM05D005368 ORTHO05D006417 9.5e-62 240.0 118 94.9
BraA01t00366Z Brassica rapa HOM05D005368 ORTHO05D006417 9.5e-62 240.0 118 94.9
AL7G16500 Arabidopsis lyrata HOM05D005368 ORTHO05D006417 1.2e-61 239.6 118 95.8
C07p60710 Brassica napus HOM05D005368 ORTHO05D006417 1.6e-61 239.2 118 94.9
AT4G34700 Arabidopsis thaliana HOM05D005368 ORTHO05D006417 3.6e-61 238.0 118 94.9
Carub.0007s0559 Capsella rubella HOM05D005368 ORTHO05D006417 3.6e-61 238.0 118 94.1
Sp7g32480 Schrenkiella parvula HOM05D005368 ORTHO05D006417 4.7e-61 237.7 118 94.1
CARHR243000 Cardamine hirsuta HOM05D005368 ORTHO05D006417 8.9e-60 233.4 118 93.2
BraA08t33631Z Brassica rapa HOM05D005368 ORTHO05D006417 6.4e-58 227.3 153 74.5
Aa31LG2G15810 Aethionema arabicum HOM05D005368 ORTHO05D006417 7.0e-57 223.8 118 86.4
BolC1t00400H Brassica oleracea HOM05D005368 ORTHO05D006417 1.3e-55 219.5 113 91.2
THA.LOC104819629 Tarenaya hassleriana HOM05D005368 ORTHO05D006417 1.9e-54 215.7 118 83.9
Gohir.D12G031300 Gossypium hirsutum HOM05D005368 ORTHO05D006417 1.2e-51 206.5 116 81.9
Gorai.008G032000 Gossypium raimondii HOM05D005368 ORTHO05D006417 1.2e-51 206.5 116 81.9
Duzib132G1204 Durio zibethinus HOM05D005368 ORTHO05D006417 2.6e-51 205.3 116 81.0
Thecc.02G075100 Theobroma cacao HOM05D005368 ORTHO05D006417 3.4e-51 204.9 116 81.0
CiPaw.06G128000 Carya illinoinensis HOM05D005368 ORTHO05D006417 5.8e-51 204.1 116 81.0
Gohir.A12G041100 Gossypium hirsutum HOM05D005368 ORTHO05D006417 5.8e-51 204.1 116 81.0
Gohir.A03G199300 Gossypium hirsutum HOM05D005368 ORTHO05D006417 9.8e-51 203.4 116 81.0
Gorai.005G248500 Gossypium raimondii HOM05D005368 ORTHO05D006417 9.8e-51 203.4 116 81.0
COL.COLO4_26045 Corchorus olitorius HOM05D005368 ORTHO05D006417 1.3e-50 203.0 114 80.7
Duzib052G0771 Durio zibethinus HOM05D005368 ORTHO05D006417 1.3e-50 203.0 116 80.2
GSVIVG01024171001 Vitis vinifera HOM05D005368 ORTHO05D006417 1.3e-50 203.0 112 82.1
Gohir.D02G220600 Gossypium hirsutum HOM05D005368 ORTHO05D006417 2.2e-50 202.2 116 80.2
CiPaw.05G073300 Carya illinoinensis HOM05D005368 ORTHO05D006417 4.9e-50 201.1 116 80.2
RcHm_v2.0_Chr6g0267931 Rosa chinensis HOM05D005368 ORTHO05D006417 4.9e-50 201.1 116 79.3
FvH4_2g10430 Fragaria vesca HOM05D005368 ORTHO05D006417 8.3e-50 200.3 116 79.3
FAN24G2358 Fragaria x ananassa HOM05D005368 ORTHO05D006417 8.3e-50 200.3 116 79.3
Atru.chr5.3143 Acer truncatum HOM05D005368 ORTHO05D006417 1.4e-49 199.5 115 80.9
Sed0023703 Sechium edule HOM05D005368 ORTHO05D006417 1.4e-49 199.5 116 79.3
Haze_02245 Corylus avellana HOM05D005368 ORTHO05D006417 1.9e-49 199.1 116 79.3
CsaV3_2G015290 Cucumis sativus L. HOM05D005368 ORTHO05D006417 1.9e-49 199.1 116 78.4
Cfa005111 Carpinus fangiana HOM05D005368 ORTHO05D006417 2.4e-49 198.7 116 79.3
FAN20G0372 Fragaria x ananassa HOM05D005368 ORTHO05D006417 2.4e-49 198.7 116 78.4
FAN27G2088 Fragaria x ananassa HOM05D005368 ORTHO05D006417 5.4e-49 197.6 116 77.6
Manes.04G083400 Manihot esculenta HOM05D005368 ORTHO05D006417 5.4e-49 197.6 113 78.8
Haze_02248 Corylus avellana HOM05D005368 ORTHO05D006417 9.2e-49 196.8 115 79.1
FAN15G3179 Fragaria x ananassa HOM05D005368 ORTHO05D006417 9.2e-49 196.8 116 78.4
Sed0006755 Sechium edule HOM05D005368 ORTHO05D006417 9.2e-49 196.8 114 79.8
MD00G1086200 Malus domestica HOM05D005368 ORTHO05D006417 1.6e-48 196.1 116 78.4
CANSAT11G1177 Cannabis sativa HOM05D005368 ORTHO05D006417 2.0e-48 195.7 112 79.5
MSTRG.27675 Avicennia marina HOM05D005368 ORTHO05D006417 4.6e-48 194.5 113 77.9
Glyma.04G008100 Glycine max HOM05D005368 ORTHO05D006417 7.8e-48 193.7 112 80.4
Lalb_Chr11g0061301 Lupinus albus HOM05D005368 ORTHO05D006417 1.0e-47 193.4 116 76.7
PGR042G2956 Punica granatum HOM05D005368 ORTHO05D006417 1.0e-47 193.4 115 74.8
Prupe.8G083900 Prunus persica HOM05D005368 ORTHO05D006417 1.3e-47 193.0 116 77.6
Migut.N01277 Erythranthe guttata HOM05D005368 ORTHO05D006417 2.3e-47 192.2 113 77.9
Glyma.06G007900 Glycine max HOM05D005368 ORTHO05D006417 2.3e-47 192.2 112 79.5
Manes.11G081900 Manihot esculenta HOM05D005368 ORTHO05D006417 2.3e-47 192.2 113 77.0
Ciclev10029601m.g Citrus clementina HOM05D005368 ORTHO05D006417 5.0e-47 191.0 117 76.1
CSS0039837 Camellia sinensis var. sinensis HOM05D005368 ORTHO05D006417 6.6e-47 190.7 113 76.1
Lalb_Chr08g0246711 Lupinus albus HOM05D005368 ORTHO05D006417 6.6e-47 190.7 112 76.8
Cc02_g16910 Coffea canephora HOM05D005368 ORTHO05D006417 8.6e-47 190.3 113 76.1
HanXRQChr15g0478311 Helianthus annuus HOM05D005368 ORTHO05D006417 8.6e-47 190.3 116 75.9
Nn5g29240 Nelumbo nucifera HOM05D005368 ORTHO05D006417 8.6e-47 190.3 111 76.6
ECA246G1492 Erigeron canadensis HOM05D005368 ORTHO05D006417 1.5e-46 189.5 112 75.9
Hma1.2p1_0032F.1_g020120 Hydrangea macrophylla HOM05D005368 ORTHO05D006417 1.5e-46 189.5 112 75.9
CSS0032904 Camellia sinensis var. sinensis HOM05D005368 ORTHO05D006417 1.9e-46 189.1 113 75.2
Gorai.002G149100 Gossypium raimondii HOM05D005368 ORTHO05D006417 1.9e-46 189.1 118 75.4
Lj3g0011506 Lotus japonicus HOM05D005368 ORTHO05D006417 1.9e-46 189.1 113 76.1
Hund00179 Selenicereus undatus HOM05D005368 ORTHO05D006417 1.9e-46 189.1 112 74.1
Hund00187 Selenicereus undatus HOM05D005368 ORTHO05D006417 1.9e-46 189.1 112 74.1
TAR376G0297 Trochodendron aralioides HOM05D005368 ORTHO05D006417 1.9e-46 189.1 111 77.5
Aqoxy5G01478 Aquilegia oxysepala HOM05D005368 ORTHO05D006417 2.5e-46 188.7 111 76.6
Nitab4.5_0005266g0100 Nicotiana tabacum HOM05D005368 ORTHO05D006417 2.5e-46 188.7 115 74.8
Medtr3g117550 Medicago truncatula HOM05D005368 ORTHO05D006417 3.3e-46 188.3 116 74.1
TWI79G1074 Tripterygium wilfordii HOM05D005368 ORTHO05D006417 3.3e-46 188.3 115 73.9
VMungo1309G2922 Vigna mungo HOM05D005368 ORTHO05D006417 3.3e-46 188.3 112 77.7
ClCG11G003860 Citrullus lanatus HOM05D005368 ORTHO05D006417 4.3e-46 188.0 116 75.9
Ca_15334_v3 Cicer arietinum L. HOM05D005368 ORTHO05D006417 5.6e-46 187.6 113 75.2
Nitab4.5_0001317g0060 Nicotiana tabacum HOM05D005368 ORTHO05D006417 5.6e-46 187.6 115 75.7
TWI31G1415 Tripterygium wilfordii HOM05D005368 ORTHO05D006417 5.6e-46 187.6 115 75.7
CAN.G170.100 Capsicum annuum HOM05D005368 ORTHO05D006417 7.3e-46 187.2 115 73.0
CDE02G1335 Ceratophyllum demersum HOM05D000240 ORTHO05D001140 9.5e-46 186.8 116 73.3
MSTRG.20040 Avicennia marina HOM05D005368 ORTHO05D006417 1.2e-45 186.4 112 75.0
MD10G1063100 Malus domestica HOM05D005368 ORTHO05D006417 2.1e-45 185.7 116 75.9
Potri.009G124600 Populus trichocarpa HOM05D005368 ORTHO05D006417 2.1e-45 185.7 113 75.2
Potri.004G163000 Populus trichocarpa HOM05D005368 ORTHO05D006417 2.8e-45 185.3 116 72.4
SGA_v2.0_scaffold207G41877 Striga asiatica HOM05D005368 ORTHO05D006417 3.6e-45 184.9 112 74.1
Psat5g003920 Pisum sativum HOM05D005368 ORTHO05D006417 6.2e-45 184.1 113 73.5
MELO3C023357.2 Cucumis melo HOM05D005368 ORTHO05D006417 8.1e-45 183.7 108 79.6
Hund06283 Selenicereus undatus HOM05D005368 ORTHO05D006417 1.1e-44 183.3 112 69.6
Solyc01g110390.2 Solanum lycopersicum HOM05D005368 ORTHO05D006417 1.1e-44 183.3 115 71.3
MBI18_g13600_MAGBIO Magnolia biondii HOM05D005368 ORTHO05D006417 1.4e-44 183.0 113 73.5
PSO210G0115 Papaver somniferum HOM05D005368 ORTHO05D006417 3.1e-44 181.8 108 75.9
Peaxi162Scf00016g00038 Petunia axillaris HOM05D005368 ORTHO05D006417 3.1e-44 181.8 115 71.3
PSO170G4570 Papaver somniferum HOM05D005368 ORTHO05D006417 4.0e-44 181.4 108 75.0
Ah.01g006460 Amaranthus hybridus HOM05D005368 ORTHO05D006417 5.2e-44 181.0 113 70.8
TWI75G0748 Tripterygium wilfordii HOM05D005368 ORTHO05D006417 5.2e-44 181.0 115 73.0
HPP92_012929 Vanilla planifolia HOM05D005368 ORTHO05D006417 1.5e-43 179.5 111 73.9
Phvul.009G002900 Phaseolus vulgaris HOM05D005368 ORTHO05D006417 2.0e-43 179.1 112 75.0
QL11p046417 Quercus lobata HOM05D005368 ORTHO05D006417 4.4e-43 177.9 137 62.8
Os06g0714100 Oryza sativa ssp. japonica HOM05D005368 ORTHO05D006417 5.8e-43 177.6 111 73.0
Thhalv10026594m.g Eutrema salsugineum HOM05D005368 ORTHO05D006417 9.8e-43 176.8 118 75.4
AUR62016830 Chenopodium quinoa HOM05D005368 ORTHO05D006417 2.9e-42 175.3 113 69.9
AUR62010388 Chenopodium quinoa HOM05D005368 ORTHO05D006417 3.7e-42 174.9 113 69.9
SalBow3G2013 Salvia bowleyana HOM05D005368 ORTHO05D006417 1.4e-41 172.9 98 81.6
Nitab4.5_0010630g0030 Nicotiana tabacum HOM05D005368 ORTHO05D006417 1.9e-41 172.6 102 79.4
Ah.01g018810 Amaranthus hybridus HOM05D005368 ORTHO05D006417 2.4e-41 172.2 99 76.8
Lsat_1_v5_gn_3_44180 Lactuca sativa HOM05D005368 ORTHO05D006417 3.2e-41 171.8 116 69.0
Gohir.D13G096825 Gossypium hirsutum HOM05D005368 ORTHO05D006417 9.2e-41 170.2 105 74.3
MD00G1117500 Malus domestica HOM05D005368 ORTHO05D006417 1.6e-40 169.5 116 70.7
EL10Ac9g21636 Beta vulgaris HOM05D005368 ORTHO05D006417 4.6e-40 167.9 99 73.7
Sc08g0000900 Simmondsia chinensis HOM05D005368 ORTHO05D006417 4.6e-40 167.9 105 69.5
ATR0149G005 Amborella trichopoda HOM05D005368 ORTHO05D006417 5.1e-39 164.5 109 69.7
Dinv23453 Davidia involucrata HOM05D005368 ORTHO05D006417 4.3e-38 161.4 96 78.1
Oeu046129.2 Olea europaea HOM05D005368 ORTHO05D006417 1.2e-37 159.8 118 65.3
TPR.G32174 Trifolium pratense HOM05D005368 ORTHO05D006417 1.2e-37 159.8 180 48.3
Zm00001eb227940 Zea mays HOM05D005368 ORTHO05D006417 8.1e-37 157.1 98 72.4
CDE04G1205 Ceratophyllum demersum HOM05D005368 ORTHO05D006417 3.4e-35 151.8 91 78.0
Nitab4.5_0005932g0060 Nicotiana tabacum HOM05D005368 ORTHO05D006417 3.2e-33 145.2 115 62.6
Mapoly0002s0197 Marchantia polymorpha HOM05D005368 ORTHO05D006417 2.1e-32 142.5 112 57.1
Pp3c6_19130 Physcomitrium patens HOM05D005368 ORTHO05D006417 3.5e-32 141.7 113 54.0
Actinidia02246 Actinidia chinensis HOM05D005368 ORTHO05D006417 1.9e-30 136.0 115 59.1
SEGI_21378 Sequoiadendron giganteum HOM05D005368 ORTHO05D006417 3.3e-30 135.2 111 54.1
PGSC0003DMG400005571 Solanum tuberosum HOM05D005368 ORTHO05D006417 2.1e-29 132.5 85 70.6
AagrBONN_evm.TU.Sc2ySwM_368.1500 Anthoceros agrestis HOM05D005368 ORTHO05D006417 8.1e-29 130.6 109 52.3
CBR_g22898 Chara braunii HOM05D000019 ORTHO05D000048 4.2e-25 118.2 114 50.0
BolC3t20846H Brassica oleracea HOM05D005368 ORTHO05D006417 2.1e-24 115.9 83 74.7
SMO159G0001 Selaginella moellendorffii HOM05D005368 ORTHO05D006417 2.1e-24 115.9 103 52.4
SMO223G0026 Selaginella moellendorffii HOM05D000032 ORTHO05D004142 1.7e-23 112.8 99 53.5
Gohir.A13G090800 Gossypium hirsutum HOM05D005368 ORTHO05D006417 5.1e-23 111.3 85 64.7
Eucgr.G01730 Eucalyptus grandis HOM05D005368 ORTHO05D006417 4.3e-22 108.2 58 77.6
HanXRQChr10g0292781 Helianthus annuus HOM05D005368 ORTHO05D006417 2.8e-21 105.5 58 74.1
BcaNung04613 Brassica carinata HOM05D005368 ORTHO05D006417 4.8e-21 104.8 55 89.1
Lj5C189G13 Lonicera japonica HOM05D006147 ORTHO05D007501 4.8e-21 104.8 56 76.8
Sopen01g052540 Solanum pennellii HOM05D005368 ORTHO05D006417 3.1e-20 102.1 57 75.4
unitig_60.g25866 Utricularia gibba HOM05D005368 ORTHO05D006417 9.9e-19 97.1 113 47.8
BcaNung02377 Brassica carinata HOM05D005368 ORTHO05D006417 2.9e-18 95.5 47 91.5
MCO15G169 Micromonas commoda HOM05D005368 ORTHO05D006417 3.8e-18 95.1 96 47.9
CSS0005721 Camellia sinensis var. sinensis HOM05D005368 ORTHO05D006417 1.4e-17 93.2 58 69.0
Migut.B00174 Erythranthe guttata HOM05D005368 ORTHO05D006417 2.7e-16 89.0 55 76.4
HanXRQChr17g0544121 Helianthus annuus HOM05D005368 ORTHO05D006417 7.9e-16 87.4 58 77.6
Oeu020711.1 Olea europaea HOM05D005368 ORTHO05D006417 7.9e-16 87.4 135 39.3
MD05G1026100 Malus domestica HOM05D005333 ORTHO05D005776 4.3e-14 81.6 79 55.7
Cre11.g467668 Chlamydomonas reinhardtii HOM05D005368 ORTHO05D006417 1.1e-09 67.0 99 35.4
VMungo0540G1094 Vigna mungo HOM05D003030 ORTHO05D006417 9.6e-06 53.9 82 42.7


User provided reference genes

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