Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C03p85360 Brassica napus HOM05D004157 ORTHO05D004860 3.3e-147 525.0 267 100.0
BcaC01g00866 Brassica carinata HOM05D004157 ORTHO05D004860 1.4e-145 519.6 267 99.3
BolC3t20826H Brassica oleracea HOM05D004157 ORTHO05D004860 4.1e-145 518.1 267 98.9
A08p16520 Brassica napus HOM05D004157 ORTHO05D004860 5.5e-142 507.7 267 97.4
BcaB03g11807 Brassica carinata HOM05D004157 ORTHO05D004860 2.8e-138 495.4 267 94.8
Sp7g32610 Schrenkiella parvula HOM05D004157 ORTHO05D004860 5.4e-129 464.5 255 91.8
Thhalv10026821m.g Eutrema salsugineum HOM05D004157 ORTHO05D004860 9.1e-129 463.8 267 88.8
AL7G16370 Arabidopsis lyrata HOM05D004157 ORTHO05D004860 5.5e-126 454.5 255 90.2
Carub.0007s0546 Capsella rubella HOM05D004157 ORTHO05D004860 1.5e-123 446.4 255 88.2
CARHR243130 Cardamine hirsuta HOM05D004157 ORTHO05D004860 5.0e-119 431.4 251 87.6
Aa31LG2G15700 Aethionema arabicum HOM05D004157 ORTHO05D004860 1.5e-118 429.9 267 80.1
BraA08t33620Z Brassica rapa HOM05D004157 ORTHO05D004860 7.0e-105 384.4 201 96.5
THA.LOC104819635 Tarenaya hassleriana HOM05D004157 ORTHO05D004860 2.5e-102 375.9 267 70.0
PGR042G1356 Punica granatum HOM05D004157 ORTHO05D004860 2.1e-101 372.9 267 69.7
AT4G34840 Arabidopsis thaliana HOM05D004157 ORTHO05D004860 8.1e-101 370.9 205 91.2
Hma1.2p1_1385F.1_g279670 Hydrangea macrophylla HOM05D004157 ORTHO05D004860 1.7e-98 363.2 262 68.3
QL11p047455 Quercus lobata HOM05D004157 ORTHO05D004860 3.7e-98 362.1 266 66.5
PSO541G4423 Papaver somniferum HOM05D004157 ORTHO05D004860 6.4e-98 361.3 267 66.3
GSVIVG01024109001 Vitis vinifera HOM05D004157 ORTHO05D004860 1.1e-97 360.5 262 67.2
Eucgr.G01748 Eucalyptus grandis HOM05D004157 ORTHO05D004860 2.4e-97 359.4 267 65.9
PSO675G3214 Papaver somniferum HOM05D004157 ORTHO05D004860 3.2e-97 359.0 267 65.9
Gohir.A03G202800 Gossypium hirsutum HOM05D004157 ORTHO05D004860 4.1e-97 358.6 267 67.0
Gorai.005G251900 Gossypium raimondii HOM05D004157 ORTHO05D004860 4.1e-97 358.6 259 68.0
Solyc01g111060.4 Solanum lycopersicum HOM05D004157 ORTHO05D004860 9.2e-97 357.5 248 71.4
THA.LOC104807783 Tarenaya hassleriana HOM05D004157 ORTHO05D004860 1.2e-96 357.1 267 65.2
PGR142G1140 Punica granatum HOM05D004157 ORTHO05D004860 1.6e-96 356.7 267 64.4
MD10G1116600 Malus domestica HOM05D004157 ORTHO05D004860 2.1e-96 356.3 267 67.0
Sopen01g053120 Solanum pennellii HOM05D004157 ORTHO05D004860 2.7e-96 355.9 248 70.6
Aqoxy5G01458 Aquilegia oxysepala HOM05D004157 ORTHO05D004860 3.5e-96 355.5 267 65.5
CANSAT25G0852 Cannabis sativa HOM05D004157 ORTHO05D004860 3.5e-96 355.5 267 65.9
PGSC0003DMG400001636 Solanum tuberosum HOM05D004157 ORTHO05D004860 3.5e-96 355.5 248 71.8
Gohir.D02G224100 Gossypium hirsutum HOM05D004157 ORTHO05D004860 4.6e-96 355.1 259 67.6
TAR381G0601 Trochodendron aralioides HOM05D004157 ORTHO05D004860 6.0e-96 354.8 267 64.4
Migut.I00211 Erythranthe guttata HOM05D004157 ORTHO05D004860 7.8e-96 354.4 267 65.9
Peaxi162Scf00362g01054 Petunia axillaris HOM05D004157 ORTHO05D004860 7.8e-96 354.4 248 72.2
Cc02_g16620 Coffea canephora HOM05D004157 ORTHO05D004860 1.7e-95 353.2 262 65.6
Cfa005173 Carpinus fangiana HOM05D004157 ORTHO05D004860 2.3e-95 352.8 267 64.8
Prupe.8G159400 Prunus persica HOM05D004157 ORTHO05D004860 3.0e-95 352.4 267 65.9
Phvul.009G000600 Phaseolus vulgaris HOM05D004157 ORTHO05D004860 3.9e-95 352.1 269 66.2
Actinidia32087 Actinidia chinensis HOM05D004157 ORTHO05D004860 6.6e-95 351.3 254 68.9
Sabra09G0098500 Salix brachista HOM05D004157 ORTHO05D004860 8.6e-95 350.9 246 69.1
TWI79G0156 Tripterygium wilfordii HOM05D004157 ORTHO05D004860 8.6e-95 350.9 259 66.8
EL10Ac9g21458 Beta vulgaris HOM05D004157 ORTHO05D004860 1.1e-94 350.5 262 66.0
CsaV3_7G000760 Cucumis sativus L. HOM05D004157 ORTHO05D004860 1.5e-94 350.1 259 67.6
Potri.004G167200 Populus trichocarpa HOM05D004157 ORTHO05D004860 1.5e-94 350.1 246 68.7
Sc18g0006720 Simmondsia chinensis HOM05D004157 ORTHO05D004860 1.5e-94 350.1 254 68.1
vmacro22690 Vaccinium macrocarpon HOM05D004157 ORTHO05D004860 1.9e-94 349.7 247 68.0
TWI75G1232 Tripterygium wilfordii HOM05D004157 ORTHO05D004860 3.3e-94 349.0 267 65.9
MELO3C013382.2 Cucumis melo HOM05D004157 ORTHO05D004860 5.6e-94 348.2 259 67.2
FAN24G0875 Fragaria x ananassa HOM05D004157 ORTHO05D004860 7.3e-94 347.8 267 64.0
Thecc.02G068100 Theobroma cacao HOM05D004157 ORTHO05D004860 7.3e-94 347.8 267 64.8
COL.COLO4_17245 Corchorus olitorius HOM05D004157 ORTHO05D004860 9.5e-94 347.4 304 59.2
FvH4_2g02150 Fragaria vesca HOM05D004157 ORTHO05D004860 9.5e-94 347.4 267 64.0
Glyma.06G005600 Glycine max HOM05D004157 ORTHO05D004860 9.5e-94 347.4 267 63.3
FAN20G1131 Fragaria x ananassa HOM05D004157 ORTHO05D004860 1.6e-93 346.7 267 64.0
AL7G10670 Arabidopsis lyrata HOM05D004157 ORTHO05D004860 4.7e-93 345.1 267 62.5
Thhalv10025990m.g Eutrema salsugineum HOM05D004157 ORTHO05D004860 4.7e-93 345.1 267 62.2
RcHm_v2.0_Chr6g0245651 Rosa chinensis HOM05D004157 ORTHO05D004860 4.7e-93 345.1 267 64.0
Glyma.04G005900 Glycine max HOM05D004157 ORTHO05D004860 6.2e-93 344.7 267 63.7
Nn5g30153 Nelumbo nucifera HOM05D004157 ORTHO05D004860 2.3e-92 342.8 251 65.7
SGA_v2.0_scaffold80G25867 Striga asiatica HOM05D004157 ORTHO05D004860 3.1e-92 342.4 255 66.7
Actinidia00586 Actinidia chinensis HOM05D004157 ORTHO05D004860 5.2e-92 341.7 265 65.7
Aqoxy2G00577 Aquilegia oxysepala HOM05D004157 ORTHO05D004860 5.2e-92 341.7 252 65.5
Lsat_1_v5_gn_3_45521 Lactuca sativa HOM05D004157 ORTHO05D004860 8.9e-92 340.9 243 69.1
Medtr3g117700 Medicago truncatula HOM05D004157 ORTHO05D004860 8.9e-92 340.9 252 63.1
TPR.G38481 Trifolium pratense HOM05D004157 ORTHO05D004860 8.9e-92 340.9 245 66.1
MSTRG.5432 Avicennia marina HOM05D004157 ORTHO05D004860 1.2e-91 340.5 246 67.9
Eucgr.G01749 Eucalyptus grandis HOM05D004157 ORTHO05D004860 1.2e-91 340.5 269 65.4
Lj1g0011325 Lotus japonicus HOM05D004157 ORTHO05D004860 1.5e-91 340.1 246 67.1
VMungo1309G1201 Vigna mungo HOM05D004157 ORTHO05D004860 2.6e-91 339.3 247 64.8
Atru.chr5.3210 Acer truncatum HOM05D004157 ORTHO05D004860 3.4e-91 339.0 250 66.4
Oeu055643.1 Olea europaea HOM05D004157 ORTHO05D004860 3.4e-91 339.0 234 71.4
AT4G38800 Arabidopsis thaliana HOM05D004157 ORTHO05D004860 4.4e-91 338.6 268 61.6
ECA234G4736 Erigeron canadensis HOM05D004157 ORTHO05D004860 4.4e-91 338.6 247 66.4
BcaC01g00256 Brassica carinata HOM05D004157 ORTHO05D004860 7.6e-91 337.8 246 65.4
CARHR247930 Cardamine hirsuta HOM05D004157 ORTHO05D004860 9.9e-91 337.4 267 61.4
Lalb_Chr11g0061251 Lupinus albus HOM05D004157 ORTHO05D004860 9.9e-91 337.4 250 64.8
Psat5g003520 Pisum sativum HOM05D004157 ORTHO05D004860 1.3e-90 337.0 244 65.2
CiPaw.06G125600 Carya illinoinensis HOM05D000447 ORTHO05D000315 1.7e-90 336.7 253 64.8
BcaB03g12226 Brassica carinata HOM05D004157 ORTHO05D004860 2.2e-90 336.3 256 63.3
Carub.0007s0065 Capsella rubella HOM05D004157 ORTHO05D004860 2.9e-90 335.9 245 65.3
Ca_15317_v3 Cicer arietinum L. HOM05D000600 ORTHO05D004860 2.9e-90 335.9 235 67.2
Lj5A185T60 Lonicera japonica HOM05D004157 ORTHO05D004860 1.1e-89 334.0 246 66.7
C03p77330 Brassica napus HOM05D004157 ORTHO05D004860 1.9e-89 333.2 267 61.4
PSO675G5417 Papaver somniferum HOM05D004157 ORTHO05D004860 1.9e-89 333.2 267 62.9
Os06g0112200 Oryza sativa ssp. japonica HOM05D004157 ORTHO05D004860 2.4e-89 332.8 243 66.3
Ah.01g009470 Amaranthus hybridus HOM05D004157 ORTHO05D004860 3.2e-89 332.4 282 60.6
HPP92_002547 Vanilla planifolia HOM05D004157 ORTHO05D004860 3.2e-89 332.4 247 64.4
CAN.G588.18 Capsicum annuum HOM05D004157 ORTHO05D004860 5.4e-89 331.6 234 70.5
BraA08t34357Z Brassica rapa HOM05D004157 ORTHO05D004860 7.1e-89 331.3 280 58.9
A08p24000 Brassica napus HOM05D004157 ORTHO05D004860 9.2e-89 330.9 267 61.0
Aa31LG6G16410 Aethionema arabicum HOM05D004157 ORTHO05D004860 1.6e-88 330.1 301 55.8
HanXRQChr10g0294891 Helianthus annuus HOM05D004157 ORTHO05D004860 2.7e-88 329.3 247 64.4
Nitab4.5_0000283g0220 Nicotiana tabacum HOM05D004157 ORTHO05D004860 2.7e-88 329.3 253 66.4
unitig_0.g2353 Utricularia gibba HOM05D004157 ORTHO05D004860 3.5e-88 328.9 246 64.2
BolC3t19986H Brassica oleracea HOM05D004157 ORTHO05D004860 4.6e-88 328.6 260 61.9
PSO541G6022 Papaver somniferum HOM05D004157 ORTHO05D004860 7.8e-88 327.8 267 62.5
DCAR_028937 Daucus carota HOM05D004157 ORTHO05D004860 1.3e-87 327.0 246 65.9
ClCG02G004360 Citrullus lanatus HOM05D000447 ORTHO05D000315 3.9e-87 325.5 232 69.0
Manes.04G078800 Manihot esculenta HOM05D004157 ORTHO05D004860 6.6e-87 324.7 228 69.3
Hund00051 Selenicereus undatus HOM05D004157 ORTHO05D004860 6.6e-87 324.7 213 73.7
arahy.Tifrunner.gnm1.ann1.391TM2 Arachis hypogaea HOM05D004157 ORTHO05D004860 1.1e-86 323.9 249 64.3
arahy.Tifrunner.gnm1.ann1.66CLCN Arachis hypogaea HOM05D004157 ORTHO05D004860 1.1e-86 323.9 249 64.3
Sed0017382 Sechium edule HOM05D004157 ORTHO05D004860 1.1e-86 323.9 234 67.5
unitig_21.g20017 Utricularia gibba HOM05D004157 ORTHO05D004860 1.1e-86 323.9 244 63.1
vmacro17385 Vaccinium macrocarpon HOM05D004157 ORTHO05D004860 1.5e-86 323.6 275 58.9
Sed0001494 Sechium edule HOM05D000447 ORTHO05D000315 2.5e-86 322.8 232 67.7
vmacro02241 Vaccinium macrocarpon HOM05D004157 ORTHO05D004860 4.3e-86 322.0 254 62.2
VMungo1309G1253 Vigna mungo HOM05D004157 ORTHO05D004860 4.3e-86 322.0 245 64.1
Oeu002957.1 Olea europaea HOM05D004157 ORTHO05D004860 1.1e-84 317.4 215 72.6
Zm00001eb036610 Zea mays HOM05D004157 ORTHO05D004860 2.4e-84 316.2 249 63.1
DCAR_003693 Daucus carota HOM05D004157 ORTHO05D004860 4.0e-84 315.5 213 71.8
Glyma.06G005700 Glycine max HOM05D004157 ORTHO05D004860 8.9e-84 314.3 247 61.1
Lj9A389T64 Lonicera japonica HOM05D004157 ORTHO05D004860 1.2e-83 313.9 216 71.3
Zm00001eb175180 Zea mays HOM05D004157 ORTHO05D004860 1.2e-83 313.9 249 62.2
AUR62010110 Chenopodium quinoa HOM05D004157 ORTHO05D004860 4.4e-83 312.0 337 52.2
Phvul.009G000700 Phaseolus vulgaris HOM05D004157 ORTHO05D004860 4.4e-83 312.0 263 59.7
Duzib132G0743 Durio zibethinus HOM05D004157 ORTHO05D004860 6.4e-82 308.1 267 59.6
Duzib052G0280 Durio zibethinus HOM05D004157 ORTHO05D004860 1.9e-81 306.6 267 59.2
ATR0089G001 Amborella trichopoda HOM05D004157 ORTHO05D004860 3.5e-80 302.4 213 68.5
ATR0095G001 Amborella trichopoda HOM05D004157 ORTHO05D004860 1.7e-79 300.1 213 68.1
HanXRQChr11g0346651 Helianthus annuus HOM05D004157 ORTHO05D004860 1.9e-78 296.6 250 58.8
Lsat_1_v5_gn_1_62181 Lactuca sativa HOM05D004157 ORTHO05D004860 4.3e-78 295.4 239 59.4
Sp7g37020 Schrenkiella parvula HOM05D004157 ORTHO05D004860 4.3e-78 295.4 273 57.5
SHI05673 Sapria himalayana HOM05D004157 ORTHO05D004860 2.1e-77 293.1 212 67.9
Prupe.8G159500 Prunus persica HOM05D004157 ORTHO05D004860 5.3e-76 288.5 276 57.2
SGA_v2.0_scaffold32G13240 Striga asiatica HOM05D004157 ORTHO05D004860 3.4e-75 285.8 249 57.8
PGR042G3985 Punica granatum HOM05D004157 ORTHO05D004860 1.7e-74 283.5 247 57.1
Eucgr.G01750 Eucalyptus grandis HOM05D004157 ORTHO05D004860 2.4e-73 279.6 245 57.6
Pp3c14_1450 Physcomitrium patens HOM05D004157 ORTHO05D004860 1.7e-71 273.5 243 56.8
CDE02G2528 Ceratophyllum demersum HOM05D004157 ORTHO05D004860 3.9e-71 272.3 255 54.1
AUR62013103 Chenopodium quinoa HOM05D004157 ORTHO05D004860 5.1e-71 271.9 184 72.8
Actinidia27843 Actinidia chinensis HOM05D004157 ORTHO05D004860 6.6e-71 271.6 234 59.0
Ciclev10029225m.g Citrus clementina HOM05D004157 ORTHO05D004860 3.3e-70 269.2 250 55.6
Pp3c1_20870 Physcomitrium patens HOM05D004157 ORTHO05D004860 7.3e-70 268.1 250 54.8
Rhsim05G0063700 Rhododendron simsii HOM05D004157 ORTHO05D004860 9.6e-70 267.7 196 68.4
Rhsim11G0186900 Rhododendron simsii HOM05D004157 ORTHO05D004860 1.3e-69 267.3 206 64.1
Mapoly0026s0093 Marchantia polymorpha HOM05D004157 ORTHO05D004860 1.4e-68 263.8 243 54.3
Cpa.g.sc37.201 Carica papaya HOM05D004157 ORTHO05D004860 2.4e-68 263.1 267 52.8
Pp3c26_5320 Physcomitrium patens HOM05D004157 ORTHO05D004860 3.4e-67 259.2 234 56.0
vmacro22693 Vaccinium macrocarpon HOM05D004157 ORTHO05D004860 5.8e-67 258.5 305 47.5
Potri.009G128700 Populus trichocarpa HOM05D004157 ORTHO05D004860 1.2e-64 250.8 180 66.7
AagrBONN_evm.TU.Sc2ySwM_368.2286 Anthoceros agrestis HOM05D004157 ORTHO05D004860 2.7e-64 249.6 245 51.4
SMO147G0350 Selaginella moellendorffii HOM05D004157 ORTHO05D004860 4.8e-61 238.8 252 48.0
SEGI_37242 Sequoiadendron giganteum HOM05D004157 ORTHO05D004860 1.0e-58 231.1 181 60.8
PGR042G2276 Punica granatum HOM05D004157 ORTHO05D004860 2.9e-58 229.6 247 50.2
MCO15G557 Micromonas commoda HOM05D004157 ORTHO05D004860 2.5e-57 226.5 244 48.0
Nitab4.5_0000980g0360 Nicotiana tabacum HOM05D004157 ORTHO05D004860 4.6e-56 222.2 146 74.7
vmacro02237 Vaccinium macrocarpon HOM05D004157 ORTHO05D004860 6.9e-52 208.4 205 56.1
Cre03.g162550 Chlamydomonas reinhardtii HOM05D004157 ORTHO05D004860 3.8e-50 202.6 234 45.3
Dinv04975 Davidia involucrata HOM05D000600 ORTHO05D000432 4.2e-49 199.1 139 70.5
Rhsim11G0185600 Rhododendron simsii HOM05D004157 ORTHO05D004860 3.0e-47 193.0 187 54.5
Rhsim11G0186700 Rhododendron simsii HOM05D004157 ORTHO05D004860 6.5e-42 175.3 166 54.2
SalBow3G1540 Salvia bowleyana HOM05D004157 ORTHO05D004860 2.3e-39 166.8 122 66.4
MBI09_g11914_MAGBIO Magnolia biondii HOM05D004157 ORTHO05D004860 1.8e-36 157.1 105 70.5
Hma1.2p1_0032F.1_g019710 Hydrangea macrophylla HOM05D004157 ORTHO05D004860 2.6e-35 153.3 148 55.4
Eucgr.L03396 Eucalyptus grandis HOM05D004157 ORTHO05D004860 4.2e-33 146.0 104 66.3
TAR625G0759 Trochodendron aralioides HOM05D004157 ORTHO05D004860 4.2e-33 146.0 100 69.0
PRCOL_00006969 Prasinoderma coloniale HOM05D004157 ORTHO05D004860 1.6e-32 144.1 238 36.1
Haze_02206 Corylus avellana HOM05D000447 ORTHO05D000315 2.2e-26 123.6 84 70.2
C07p63580 Brassica napus HOM05D004157 ORTHO05D004860 2.3e-23 113.6 118 47.5
BolC7t46771H Brassica oleracea HOM05D004157 ORTHO05D004860 2.3e-23 113.6 118 47.5
SalBow3G3146 Salvia bowleyana HOM05D004157 ORTHO05D004860 1.4e-20 104.4 66 74.2
Medtr0173s0020 Medicago truncatula HOM05D004157 ORTHO05D004860 3.1e-20 103.2 82 59.8
Aqoxy6G02338 Aquilegia oxysepala HOM05D004157 ORTHO05D004860 6.5e-18 95.5 85 56.5
arahy.Tifrunner.gnm1.ann1.R1P6K1 Arachis hypogaea HOM05D004157 ORTHO05D004860 6.5e-18 95.5 159 39.0
TAR625G0858 Trochodendron aralioides HOM05D004157 ORTHO05D004860 7.2e-17 92.0 157 39.5
CBR_g20180 Chara braunii HOM05D004157 ORTHO05D004860 1.8e-15 87.4 99 45.5
vmacro02118 Vaccinium macrocarpon HOM05D004157 ORTHO05D004860 1.5e-14 84.3 68 57.4
Glyma.04G006001 Glycine max HOM05D004157 ORTHO05D004860 5.7e-14 82.4 66 57.6
Rhsim01G0041000 Rhododendron simsii HOM05D004157 ORTHO05D004860 5.4e-12 75.9 63 65.1
HPP92_002565 Vanilla planifolia HOM05D004157 ORTHO05D004860 1.0e-07 61.6 122 37.7
Rhsim05G0183600 Rhododendron simsii HOM05D000190 ORTHO05D000113 7.5e-06 55.5 39 71.8


User provided reference genes

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