Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C03p84490 Brassica napus HOM05D002759 ORTHO05D032766 1.6e-36 155.6 78 100.0
A01p14240 Brassica napus HOM05D002759 ORTHO05D003290 5.0e-19 97.4 62 74.2
BraA01t01371Z Brassica rapa HOM05D002759 ORTHO05D003290 5.0e-19 97.4 62 74.2
Thhalv10024187m.g Eutrema salsugineum HOM05D002759 ORTHO05D003290 1.1e-18 96.3 52 86.5
AT4G22970 Arabidopsis thaliana HOM05D002759 ORTHO05D003290 1.9e-18 95.5 52 86.5
Sp7g21060 Schrenkiella parvula HOM05D002759 ORTHO05D003290 3.3e-18 94.7 52 86.5
AL7G30550 Arabidopsis lyrata HOM05D002759 ORTHO05D003290 4.2e-18 94.4 52 84.6
BcaC01g00805 Brassica carinata HOM05D002759 ORTHO05D032766 8.0e-17 90.1 44 97.7
Carub.0007s1830 Capsella rubella HOM05D002759 ORTHO05D003290 1.0e-16 89.7 52 80.8
BcaC09g51048 Brassica carinata HOM05D002759 ORTHO05D003290 1.4e-16 89.4 52 80.8
BolC1t01691H Brassica oleracea HOM05D002759 ORTHO05D003290 1.4e-16 89.4 52 80.8
BcaNung01007 Brassica carinata HOM05D002759 ORTHO05D003290 1.8e-16 89.0 52 78.8
C01p17510 Brassica napus HOM05D002759 ORTHO05D003290 1.8e-16 89.0 52 80.8
C03p84410 Brassica napus HOM05D002759 ORTHO05D032766 2.3e-16 88.6 50 86.0
A03p53910 Brassica napus HOM05D002759 ORTHO05D003290 4.0e-16 87.8 52 80.8
BraA03t14460Z Brassica rapa HOM05D002759 ORTHO05D003290 4.0e-16 87.8 52 80.8
Aa31LG6G5020 Aethionema arabicum HOM05D002759 ORTHO05D003290 6.8e-16 87.0 52 78.8
C07p52320 Brassica napus HOM05D002759 ORTHO05D003290 6.8e-16 87.0 64 67.2
BolC7t45725H Brassica oleracea HOM05D002759 ORTHO05D003290 6.8e-16 87.0 64 67.2
THA.LOC104814230 Tarenaya hassleriana HOM05D002759 ORTHO05D003290 4.9e-14 80.9 53 77.4
Thhalv10029518m.g Eutrema salsugineum HOM05D002759 ORTHO05D003290 2.7e-12 75.1 52 67.3
QL02p098685 Quercus lobata HOM05D002759 ORTHO05D003290 1.3e-11 72.8 52 69.2
Atru.chr6.1027 Acer truncatum HOM05D002759 ORTHO05D003290 8.6e-11 70.1 52 63.5
Atru.chr6.1078 Acer truncatum HOM05D002759 ORTHO05D003290 8.6e-11 70.1 52 63.5
Cpa.g.sc148.32 Carica papaya HOM05D002759 ORTHO05D003290 1.5e-10 69.3 52 65.4
CsaV3_6G032190 Cucumis sativus L. HOM05D002759 ORTHO05D003290 1.5e-10 69.3 52 69.2
TAR381G0620 Trochodendron aralioides HOM05D002759 ORTHO05D003290 1.5e-10 69.3 58 62.1
Cfa017189 Carpinus fangiana HOM05D002759 ORTHO05D003290 1.9e-10 68.9 52 69.2
MELO3C011463.2 Cucumis melo HOM05D002759 ORTHO05D003290 1.9e-10 68.9 52 67.3
Manes.07G013200 Manihot esculenta HOM05D002759 ORTHO05D003290 1.9e-10 68.9 52 65.4
Nn5g28049 Nelumbo nucifera HOM05D002759 ORTHO05D003290 1.9e-10 68.9 52 69.2
Eucgr.G00634 Eucalyptus grandis HOM05D002759 ORTHO05D003290 3.3e-10 68.2 52 67.3
CiPaw.05G042600 Carya illinoinensis HOM05D002759 ORTHO05D003290 4.3e-10 67.8 52 65.4
Lj9A311T56 Lonicera japonica HOM05D002759 ORTHO05D003290 4.3e-10 67.8 52 63.5
Ciclev10000008m.g Citrus clementina HOM05D002759 ORTHO05D003290 5.6e-10 67.4 52 63.5
BcaC02g11623 Brassica carinata HOM05D002759 ORTHO05D003290 7.3e-10 67.0 52 65.4
C04p13030 Brassica napus HOM05D002759 ORTHO05D003290 7.3e-10 67.0 52 65.4
BolC4t22942H Brassica oleracea HOM05D002759 ORTHO05D003290 7.3e-10 67.0 52 65.4
Haze_21022 Corylus avellana HOM05D002759 ORTHO05D003290 9.5e-10 66.6 52 67.3
Thecc.02G041500 Theobroma cacao HOM05D002759 ORTHO05D003290 9.5e-10 66.6 52 67.3
TWI59G0497 Tripterygium wilfordii HOM05D002759 ORTHO05D003290 9.5e-10 66.6 61 59.0
Medtr2g007790 Medicago truncatula HOM05D002759 ORTHO05D003290 1.2e-09 66.2 50 66.0
Duzib052G0069 Durio zibethinus HOM05D002759 ORTHO05D003290 1.6e-09 65.9 52 65.4
CSS0015736 Camellia sinensis var. sinensis HOM05D002759 ORTHO05D003290 2.1e-09 65.5 52 65.4
ClCG08G010020 Citrullus lanatus HOM05D002759 ORTHO05D003290 2.1e-09 65.5 50 68.0
COL.COLO4_08439 Corchorus olitorius HOM05D002759 ORTHO05D003290 2.1e-09 65.5 52 61.5
CANSAT11G0811 Cannabis sativa HOM05D002759 ORTHO05D003290 3.6e-09 64.7 49 67.3
CARHR254480 Cardamine hirsuta HOM05D002759 ORTHO05D003290 3.6e-09 64.7 52 63.5
Gohir.A01G176651 Gossypium hirsutum HOM05D002759 ORTHO05D003290 3.6e-09 64.7 52 65.4
Prupe.1G563000 Prunus persica HOM05D002759 ORTHO05D003290 3.6e-09 64.7 52 65.4
BcaB02g09105 Brassica carinata HOM05D002759 ORTHO05D003290 4.7e-09 64.3 52 63.5
Lj1g0017629 Lotus japonicus HOM05D002759 ORTHO05D003290 4.7e-09 64.3 50 66.0
Lj6g0007416 Lotus japonicus HOM05D002759 ORTHO05D003290 4.7e-09 64.3 50 66.0
Psat1g219920 Pisum sativum HOM05D002759 ORTHO05D003290 4.7e-09 64.3 50 62.0
Potri.003G021700 Populus trichocarpa HOM05D002759 ORTHO05D003290 4.7e-09 64.3 52 57.7
TPR.G2149 Trifolium pratense HOM05D002759 ORTHO05D003290 4.7e-09 64.3 65 55.4
C04p07370 Brassica napus HOM05D002759 ORTHO05D003290 6.2e-09 63.9 44 65.9
BolC4t22359H Brassica oleracea HOM05D002759 ORTHO05D003290 6.2e-09 63.9 44 65.9
Phvul.006G212401 Phaseolus vulgaris HOM05D002759 ORTHO05D003290 6.2e-09 63.9 50 68.0
Sed0002146 Sechium edule HOM05D002759 ORTHO05D003290 6.2e-09 63.9 52 63.5
PGR042G2027 Punica granatum HOM05D002759 ORTHO05D003290 8.0e-09 63.5 52 61.5
Actinidia39057 Actinidia chinensis HOM05D002759 ORTHO05D003290 1.0e-08 63.2 50 68.0
Glyma.15G048100 Glycine max HOM05D002759 ORTHO05D003290 1.0e-08 63.2 50 66.0
Gohir.D01G167432 Gossypium hirsutum HOM05D002759 ORTHO05D003290 1.0e-08 63.2 52 63.5
Gorai.002G207900 Gossypium raimondii HOM05D002759 ORTHO05D003290 1.0e-08 63.2 52 63.5
C04p12980 Brassica napus HOM05D002759 ORTHO05D003290 1.8e-08 62.4 53 64.2
Ca_00091_v3 Cicer arietinum L. HOM05D002759 ORTHO05D003290 1.8e-08 62.4 50 62.0
Ca_29930_v3 Cicer arietinum L. HOM05D002759 ORTHO05D003290 1.8e-08 62.4 50 62.0
MD15G1419000 Malus domestica HOM05D002759 ORTHO05D003290 1.8e-08 62.4 52 65.4
FAN25G1732 Fragaria x ananassa HOM05D002759 ORTHO05D003290 2.3e-08 62.0 52 59.6
Medtr7g023120 Medicago truncatula HOM05D002759 ORTHO05D003290 3.1e-08 61.6 50 60.0
PSO528G0214 Papaver somniferum HOM05D002759 ORTHO05D003290 3.1e-08 61.6 67 50.7
Sc19g0000800 Simmondsia chinensis HOM05D002759 ORTHO05D003290 3.1e-08 61.6 46 63.0
FvH4_3g35420 Fragaria vesca HOM05D002759 ORTHO05D003290 4.0e-08 61.2 52 59.6
FAN11G2638 Fragaria x ananassa HOM05D002759 ORTHO05D003290 4.0e-08 61.2 52 59.6
FAN16G3014 Fragaria x ananassa HOM05D002759 ORTHO05D003290 4.0e-08 61.2 52 59.6
Lsat_1_v5_gn_5_109460 Lactuca sativa HOM05D002759 ORTHO05D003290 4.0e-08 61.2 50 60.0
Lalb_Chr20g0123401 Lupinus albus HOM05D002759 ORTHO05D003290 4.0e-08 61.2 50 64.0
ATR0661G182 Amborella trichopoda HOM05D002759 ORTHO05D003290 5.2e-08 60.8 71 52.1
RcHm_v2.0_Chr7g0222331 Rosa chinensis HOM05D002759 ORTHO05D003290 5.2e-08 60.8 52 57.7
Migut.B00666 Erythranthe guttata HOM05D002759 ORTHO05D003290 6.8e-08 60.5 62 53.2
Glyma.08G184200 Glycine max HOM05D002759 ORTHO05D003290 8.9e-08 60.1 50 64.0
PSO170G2118 Papaver somniferum HOM05D002759 ORTHO05D003290 8.9e-08 60.1 67 49.3
vmacro01780 Vaccinium macrocarpon HOM05D002759 ORTHO05D003290 8.9e-08 60.1 58 53.4
Zm00001eb193470 Zea mays HOM05D002759 ORTHO05D003290 1.2e-07 59.7 59 50.8
Aqoxy7G02142 Aquilegia oxysepala HOM05D002759 ORTHO05D003290 1.5e-07 59.3 52 63.5
AUR62006068 Chenopodium quinoa HOM05D002759 ORTHO05D003290 2.6e-07 58.5 57 49.1
AUR62035559 Chenopodium quinoa HOM05D002759 ORTHO05D003290 2.6e-07 58.5 53 49.1
Rhsim11G0131800 Rhododendron simsii HOM05D002759 ORTHO05D003290 2.6e-07 58.5 52 59.6
CDE09G0711 Ceratophyllum demersum HOM05D002759 ORTHO05D003290 4.4e-07 57.8 52 55.8
DCAR_005626 Daucus carota HOM05D002759 ORTHO05D003290 5.8e-07 57.4 40 65.0
SGA_v2.0_scaffold110G31284 Striga asiatica HOM05D002759 ORTHO05D003290 7.5e-07 57.0 46 63.0
Aqoxy3G00692 Aquilegia oxysepala HOM05D002759 ORTHO05D003290 9.8e-07 56.6 34 73.5
arahy.Tifrunner.gnm1.ann1.JK8JKR Arachis hypogaea HOM05D002759 ORTHO05D003290 1.3e-06 56.2 62 53.2
arahy.Tifrunner.gnm1.ann1.VDG0KY Arachis hypogaea HOM05D002759 ORTHO05D003290 1.3e-06 56.2 50 58.0
arahy.Tifrunner.gnm1.ann1.YVTC7U Arachis hypogaea HOM05D002759 ORTHO05D003290 1.3e-06 56.2 50 58.0
MSTRG.16534 Avicennia marina HOM05D002759 ORTHO05D003290 1.3e-06 56.2 67 44.8
Os02g0770700 Oryza sativa ssp. japonica HOM05D002759 ORTHO05D003290 1.3e-06 56.2 41 56.1
Hund21015 Selenicereus undatus HOM05D002759 ORTHO05D003290 1.3e-06 56.2 33 75.8
Nitab4.5_0005539g0020 Nicotiana tabacum HOM05D002759 ORTHO05D003290 1.7e-06 55.8 54 53.7
FvH4_5g29930 Fragaria vesca HOM05D002759 ORTHO05D003290 2.9e-06 55.1 50 54.0
ECA234G1843 Erigeron canadensis HOM05D002759 ORTHO05D003290 3.7e-06 54.7 34 70.6
Nitab4.5_0004005g0050 Nicotiana tabacum HOM05D002759 ORTHO05D003290 3.7e-06 54.7 54 51.9
Sopen01g046990 Solanum pennellii HOM05D002759 ORTHO05D003290 4.9e-06 54.3 68 45.6
Peaxi162Scf00011g00138 Petunia axillaris HOM05D002759 ORTHO05D003290 6.4e-06 53.9 49 59.2
Solyc01g104490.3 Solanum lycopersicum HOM05D002759 ORTHO05D003290 6.4e-06 53.9 68 45.6
RcHm_v2.0_Chr7g0177921 Rosa chinensis HOM05D002759 ORTHO05D003290 8.3e-06 53.5 49 59.2


User provided reference genes

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