Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C03p84420 Brassica napus HOM05D001082 ORTHO05D028256 2.5e-37 158.3 82 100.0
A08p15990 Brassica napus HOM05D001082 ORTHO05D028256 7.3e-37 156.8 82 98.8
BraA08t33571Z Brassica rapa HOM05D001082 ORTHO05D028256 7.3e-37 156.8 82 98.8
BolC3t20733H Brassica oleracea HOM05D001082 ORTHO05D028256 9.6e-37 156.4 82 98.8
BolC1t01670H Brassica oleracea HOM05D001082 ORTHO05D001538 6.2e-20 100.5 91 69.2
BcaC09g51069 Brassica carinata HOM05D001082 ORTHO05D001538 3.1e-19 98.2 91 68.1
BcaNung01021 Brassica carinata HOM05D001082 ORTHO05D001538 4.0e-19 97.8 91 67.0
Thhalv10025848m.g Eutrema salsugineum HOM05D001082 ORTHO05D001538 3.4e-18 94.7 91 63.7
Sp7g20930 Schrenkiella parvula HOM05D001082 ORTHO05D001538 1.0e-17 93.2 91 62.6
Carub.0007s1842 Capsella rubella HOM05D001082 ORTHO05D001538 1.4e-16 89.4 91 62.6
AT4G22850 Arabidopsis thaliana HOM05D001082 ORTHO05D001538 2.5e-16 88.6 91 61.5
Aa31LG6G4920 Aethionema arabicum HOM05D001082 ORTHO05D001538 9.3e-16 86.7 91 60.4
AL7G30660 Arabidopsis lyrata HOM05D001082 ORTHO05D001538 9.3e-16 86.7 91 60.4
CARHR229880 Cardamine hirsuta HOM05D001082 ORTHO05D001538 6.7e-14 80.5 91 60.4
C01p17310 Brassica napus HOM05D001082 ORTHO05D002772 1.5e-13 79.3 53 83.0
THA.LOC104814056 Tarenaya hassleriana HOM05D001082 ORTHO05D001538 4.3e-13 77.8 86 58.1
A01p14090 Brassica napus HOM05D001082 ORTHO05D002772 1.6e-12 75.9 53 81.1
BraA01t01357Z Brassica rapa HOM05D001082 ORTHO05D002772 2.8e-12 75.1 53 79.2
CARHR254280 Cardamine hirsuta HOM05D001082 ORTHO05D001538 1.1e-11 73.2 88 51.1
AT4G12000 Arabidopsis thaliana HOM05D001082 ORTHO05D001538 1.8e-11 72.4 88 51.1
Carub.0006s3110 Capsella rubella HOM05D001082 ORTHO05D001538 1.8e-11 72.4 88 52.3
Aa31LG6G4720 Aethionema arabicum HOM05D001082 ORTHO05D001538 9.0e-11 70.1 52 73.1
AL6G46790 Arabidopsis lyrata HOM05D001082 ORTHO05D001538 1.2e-10 69.7 88 48.9
Sp6g05510 Schrenkiella parvula HOM05D001082 ORTHO05D001538 1.2e-10 69.7 88 51.1
Aa31LG9G10470 Aethionema arabicum HOM05D000005 ORTHO05D000012 2.6e-10 68.6 91 49.5
BcaC04g21185 Brassica carinata HOM05D001082 ORTHO05D001538 2.6e-10 68.6 88 50.0
C09p34480 Brassica napus HOM05D001082 ORTHO05D001538 2.6e-10 68.6 88 50.0
BolC9t56291H Brassica oleracea HOM05D001082 ORTHO05D001538 2.6e-10 68.6 88 50.0
BraA09t38284Z Brassica rapa HOM05D001082 ORTHO05D001538 2.6e-10 68.6 88 50.0
A09p27150 Brassica napus HOM05D001082 ORTHO05D001538 1.7e-09 65.9 88 47.7
BcaB01g01700 Brassica carinata HOM05D001082 ORTHO05D001538 2.9e-09 65.1 88 46.6
COL.COLO4_23833 Corchorus olitorius HOM05D001082 ORTHO05D001538 6.5e-09 63.9 91 49.5
Duzib084G0562 Durio zibethinus HOM05D001082 ORTHO05D001538 6.5e-09 63.9 91 49.5
Thecc.03G264700 Theobroma cacao HOM05D001082 ORTHO05D001538 1.4e-08 62.8 91 50.5
Duzib205G0198 Durio zibethinus HOM05D001082 ORTHO05D001538 2.5e-08 62.0 91 48.4
DCAR_006792 Daucus carota HOM05D001082 ORTHO05D001538 7.1e-08 60.5 88 47.7
FvH4_5g00960 Fragaria vesca HOM05D001082 ORTHO05D001538 9.3e-08 60.1 91 47.3
FAN08G0554 Fragaria x ananassa HOM05D001082 ORTHO05D001538 9.3e-08 60.1 91 47.3
FAN13G2863 Fragaria x ananassa HOM05D001082 ORTHO05D001538 9.3e-08 60.1 91 47.3
FAN18G1288 Fragaria x ananassa HOM05D001082 ORTHO05D001538 9.3e-08 60.1 91 47.3
Gohir.A03G012600 Gossypium hirsutum HOM05D001082 ORTHO05D001538 9.3e-08 60.1 86 44.2
VMungo0251G2424 Vigna mungo HOM05D001082 ORTHO05D001538 9.3e-08 60.1 91 46.2
Gohir.D03G156900 Gossypium hirsutum HOM05D001082 ORTHO05D001538 1.2e-07 59.7 86 45.3
Lsat_1_v5_gn_6_8521 Lactuca sativa HOM05D001082 ORTHO05D001538 1.2e-07 59.7 88 45.5
RcHm_v2.0_Chr7g0200421 Rosa chinensis HOM05D001082 ORTHO05D001538 1.2e-07 59.7 91 46.2
Dinv39054 Davidia involucrata HOM05D001082 ORTHO05D001538 1.6e-07 59.3 88 46.6
FAN04G1514 Fragaria x ananassa HOM05D001082 ORTHO05D001538 1.6e-07 59.3 91 47.3
CSS0000630 Camellia sinensis var. sinensis HOM05D001082 ORTHO05D001538 2.1e-07 58.9 91 46.2
CSS0010369 Camellia sinensis var. sinensis HOM05D001082 ORTHO05D001538 2.1e-07 58.9 91 46.2
Dinv37738 Davidia involucrata HOM05D001082 ORTHO05D001538 2.1e-07 58.9 88 46.6
Glyma.05G054500 Glycine max HOM05D001082 ORTHO05D001538 2.1e-07 58.9 91 45.1
GSVIVG01019921001 Vitis vinifera HOM05D001082 ORTHO05D001538 2.1e-07 58.9 91 44.0
Actinidia27426 Actinidia chinensis HOM05D001082 ORTHO05D001538 3.5e-07 58.2 91 46.2
Eucgr.D01963 Eucalyptus grandis HOM05D001082 ORTHO05D001538 3.5e-07 58.2 91 46.2
Gorai.003G164800 Gossypium raimondii HOM05D001082 ORTHO05D001538 3.5e-07 58.2 86 44.2
Duzib068G0500 Durio zibethinus HOM05D001082 ORTHO05D001538 4.6e-07 57.8 91 45.1
SGA_v2.0_scaffold70G23579 Striga asiatica HOM05D001082 ORTHO05D001538 6.1e-07 57.4 91 42.9
arahy.Tifrunner.gnm1.ann1.PT5JT8 Arachis hypogaea HOM05D001082 ORTHO05D001538 7.9e-07 57.0 91 46.2
arahy.Tifrunner.gnm1.ann1.UBW3XN Arachis hypogaea HOM05D001082 ORTHO05D001538 7.9e-07 57.0 91 46.2
CANSAT35G0068 Cannabis sativa HOM05D001082 ORTHO05D001538 7.9e-07 57.0 91 44.0
Lalb_Chr05g0225261 Lupinus albus HOM05D001082 ORTHO05D001538 7.9e-07 57.0 90 43.3
Actinidia05243 Actinidia chinensis HOM05D001082 ORTHO05D001538 1.0e-06 56.6 91 45.1
Ca_12289_v3 Cicer arietinum L. HOM05D001082 ORTHO05D001538 1.0e-06 56.6 91 45.1
Gohir.A08G175100 Gossypium hirsutum HOM05D001082 ORTHO05D001538 1.0e-06 56.6 85 47.1
Gohir.D08G193700 Gossypium hirsutum HOM05D001082 ORTHO05D001538 1.0e-06 56.6 85 47.1
Gorai.004G204000 Gossypium raimondii HOM05D001082 ORTHO05D001538 1.0e-06 56.6 85 47.1
Glyma.17G136900 Glycine max HOM05D001082 ORTHO05D001538 1.3e-06 56.2 91 44.0
Prupe.5G083300 Prunus persica HOM05D001082 ORTHO05D001538 1.3e-06 56.2 91 45.1
PGR031G0371 Punica granatum HOM05D001082 ORTHO05D001538 1.3e-06 56.2 91 46.2
Lj8A253T49 Lonicera japonica HOM05D001082 ORTHO05D001538 1.8e-06 55.8 90 45.6
Rhsim07G0099300 Rhododendron simsii HOM05D001082 ORTHO05D001538 1.8e-06 55.8 88 45.5
MSTRG.12039 Avicennia marina HOM05D001082 ORTHO05D001538 2.3e-06 55.5 91 44.0
Cc08_g13520 Coffea canephora HOM05D001082 ORTHO05D001538 2.3e-06 55.5 91 46.2
Oeu022404.1 Olea europaea HOM05D001082 ORTHO05D001538 2.3e-06 55.5 88 42.0
Potri.001G114600 Populus trichocarpa HOM05D001082 ORTHO05D001538 2.3e-06 55.5 84 46.4
Phvul.003G216500 Phaseolus vulgaris HOM05D001082 ORTHO05D001538 3.0e-06 55.1 88 43.2
SGA_v2.0_scaffold37G14859 Striga asiatica HOM05D001082 ORTHO05D001538 3.0e-06 55.1 88 43.2
MD04G1076400 Malus domestica HOM05D001082 ORTHO05D001538 3.9e-06 54.7 88 44.3
Medtr4g101920 Medicago truncatula HOM05D001082 ORTHO05D001538 3.9e-06 54.7 88 44.3
TPR.G37694 Trifolium pratense HOM05D001082 ORTHO05D001538 3.9e-06 54.7 90 42.2
Ciclev10021441m.g Citrus clementina HOM05D001082 ORTHO05D001538 5.1e-06 54.3 91 45.1
MD00G1071900 Malus domestica HOM05D001082 ORTHO05D001538 5.1e-06 54.3 91 44.0
Rhsim07G0098200 Rhododendron simsii HOM05D001082 ORTHO05D001538 5.1e-06 54.3 88 44.3
CAN.G630.50 Capsicum annuum HOM05D001082 ORTHO05D001538 6.7e-06 53.9 90 44.4
CiPaw.11G145000 Carya illinoinensis HOM05D001082 ORTHO05D001538 6.7e-06 53.9 88 42.0
Potri.003G117400 Populus trichocarpa HOM05D001082 ORTHO05D001538 6.7e-06 53.9 84 46.4
Hma1.2p1_0367F.1_g137210 Hydrangea macrophylla HOM05D001082 ORTHO05D001538 8.7e-06 53.5 86 43.0
TWI60G1597 Tripterygium wilfordii HOM05D001082 ORTHO05D001538 8.7e-06 53.5 88 43.2


User provided reference genes

Program Settings