Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C03p83440 Brassica napus HOM05D004361 ORTHO05D004706 3.7e-106 388.3 200 100.0
BolC3t20622H Brassica oleracea HOM05D004361 ORTHO05D004706 1.5e-104 382.9 200 98.5
A08p15200 Brassica napus HOM05D004361 ORTHO05D004706 2.2e-95 352.4 204 90.7
BraA08t33498Z Brassica rapa HOM05D004361 ORTHO05D004706 3.8e-95 351.7 203 92.6
BcaC01g00706 Brassica carinata HOM05D004361 ORTHO05D004706 4.8e-90 334.7 173 98.3
AL7G32890 Arabidopsis lyrata HOM05D004361 ORTHO05D004706 3.3e-83 312.0 198 82.3
AT4G21215 Arabidopsis thaliana HOM05D004361 ORTHO05D004706 1.3e-82 310.1 198 81.8
Sp7g19310 Schrenkiella parvula HOM05D004361 ORTHO05D004706 2.4e-81 305.8 198 81.8
BcaB03g11696 Brassica carinata HOM05D004361 ORTHO05D004706 1.9e-78 296.2 176 88.1
A01p12590 Brassica napus HOM05D004361 ORTHO05D004706 3.2e-78 295.4 199 79.9
BraA01t01202Z Brassica rapa HOM05D004361 ORTHO05D004706 3.2e-78 295.4 199 79.9
Thhalv10026295m.g Eutrema salsugineum HOM05D004361 ORTHO05D004706 3.2e-78 295.4 199 79.9
BolC1t01465H Brassica oleracea HOM05D004361 ORTHO05D004706 6.1e-77 291.2 199 78.9
CARHR227810 Cardamine hirsuta HOM05D004361 ORTHO05D004706 2.3e-76 289.3 198 79.8
BcaC09g51243 Brassica carinata HOM05D004361 ORTHO05D004706 3.0e-76 288.9 199 78.4
BcaNung03832 Brassica carinata HOM05D004361 ORTHO05D004706 5.1e-76 288.1 199 78.9
Carub.0007s2020 Capsella rubella HOM05D004361 ORTHO05D004706 4.4e-75 285.0 203 78.8
BcaC06g30659 Brassica carinata HOM05D004361 ORTHO05D004706 4.8e-74 281.6 197 75.1
A03p52710 Brassica napus HOM05D004361 ORTHO05D004706 6.9e-73 277.7 196 75.0
BcaNung00863 Brassica carinata HOM05D004361 ORTHO05D004706 3.4e-72 275.4 196 75.0
BolC7t45614H Brassica oleracea HOM05D004361 ORTHO05D004706 3.4e-72 275.4 196 75.0
C07p51140 Brassica napus HOM05D004361 ORTHO05D004706 1.7e-71 273.1 196 74.5
BraA03t14345Z Brassica rapa HOM05D004361 ORTHO05D004706 5.0e-71 271.6 196 74.0
C01p15160 Brassica napus HOM05D004361 ORTHO05D004706 2.0e-64 249.6 174 76.4
Aa31LG6G3240 Aethionema arabicum HOM05D004361 ORTHO05D004706 5.7e-51 204.9 201 60.7
THA.LOC104806260 Tarenaya hassleriana HOM05D004361 ORTHO05D004706 3.5e-40 169.1 193 56.0
THA.LOC104812510 Tarenaya hassleriana HOM05D004361 ORTHO05D004706 4.4e-35 152.1 198 51.0
arahy.Tifrunner.gnm1.ann1.F31F99 Arachis hypogaea HOM05D004361 ORTHO05D004706 2.8e-21 106.3 200 40.5
Thecc.06G213600 Theobroma cacao HOM05D004361 ORTHO05D004706 8.9e-20 101.3 196 40.8
CSS0034427 Camellia sinensis var. sinensis HOM05D004361 ORTHO05D004706 4.9e-18 95.5 181 44.2
Cfa000279 Carpinus fangiana HOM05D004361 ORTHO05D004706 4.9e-18 95.5 187 42.8
Gohir.A06G145600 Gossypium hirsutum HOM05D004361 ORTHO05D004706 8.3e-18 94.7 187 40.1
Potri.011G026900 Populus trichocarpa HOM05D004361 ORTHO05D004706 1.1e-17 94.4 197 40.6
CAN.G569.44 Capsicum annuum HOM05D004361 ORTHO05D004706 1.9e-17 93.6 194 40.2
Actinidia14236 Actinidia chinensis HOM05D004361 ORTHO05D004706 4.1e-17 92.4 177 40.7
Medtr1g105555 Medicago truncatula HOM05D004361 ORTHO05D004706 4.1e-17 92.4 176 43.2
Haze_06732 Corylus avellana HOM05D004361 ORTHO05D004706 5.4e-17 92.0 186 39.8
Gohir.A06G208100 Gossypium hirsutum HOM05D004361 ORTHO05D004706 5.4e-17 92.0 189 41.8
COL.COLO4_31721 Corchorus olitorius HOM05D004361 ORTHO05D004706 7.1e-17 91.7 194 38.1
Glyma.10G252400 Glycine max HOM05D004361 ORTHO05D004706 7.1e-17 91.7 190 36.8
Glyma.20G141000 Glycine max HOM05D004361 ORTHO05D004706 1.6e-16 90.5 189 38.1
QL05p075222 Quercus lobata HOM05D004361 ORTHO05D004706 1.6e-16 90.5 189 40.2
Manes.16G012800 Manihot esculenta HOM05D004361 ORTHO05D004706 2.1e-16 90.1 195 36.4
VMungo0720G0988 Vigna mungo HOM05D004361 ORTHO05D004706 2.1e-16 90.1 190 37.4
Haze_06736 Corylus avellana HOM05D004361 ORTHO05D004706 2.7e-16 89.7 186 39.2
MSTRG.15964 Avicennia marina HOM05D004361 ORTHO05D004706 3.5e-16 89.4 196 38.3
Cpa.g.sc198.2 Carica papaya HOM05D004361 ORTHO05D004706 3.5e-16 89.4 199 38.2
Duzib235G0682 Durio zibethinus HOM05D004361 ORTHO05D004706 4.6e-16 89.0 196 40.3
RcHm_v2.0_Chr5g0004031 Rosa chinensis HOM05D004361 ORTHO05D004706 6.0e-16 88.6 190 38.4
Actinidia05535 Actinidia chinensis HOM05D004361 ORTHO05D004706 7.8e-16 88.2 181 37.6
Duzib192G0487 Durio zibethinus HOM05D004361 ORTHO05D004706 1.0e-15 87.8 196 40.3
Lalb_Chr02g0144581 Lupinus albus HOM05D004361 ORTHO05D004706 1.3e-15 87.4 193 36.8
Sabra04G0012700 Salix brachista HOM05D004361 ORTHO05D004706 1.3e-15 87.4 183 39.9
TWI38G1626 Tripterygium wilfordii HOM05D004361 ORTHO05D004706 1.3e-15 87.4 195 41.5
CiPaw.09G086700 Carya illinoinensis HOM05D004361 ORTHO05D004706 1.7e-15 87.0 187 40.6
Gorai.010G176700 Gossypium raimondii HOM05D004361 ORTHO05D004706 1.7e-15 87.0 187 38.0
PGSC0003DMG400002067 Solanum tuberosum HOM05D004361 ORTHO05D004706 1.7e-15 87.0 195 39.0
Sc05g0008860 Simmondsia chinensis HOM05D004361 ORTHO05D004706 2.3e-15 86.7 187 39.6
GSVIVG01012625001 Vitis vinifera HOM05D004361 ORTHO05D004706 5.1e-15 85.5 195 39.5
CSS0045436 Camellia sinensis var. sinensis HOM05D004361 ORTHO05D004706 6.6e-15 85.1 181 40.9
TWI38G0935 Tripterygium wilfordii HOM05D004361 ORTHO05D004706 6.6e-15 85.1 186 39.2
Gohir.D06G151500 Gossypium hirsutum HOM05D004361 ORTHO05D004706 1.5e-14 84.0 187 37.4
MD10G1314300 Malus domestica HOM05D004361 ORTHO05D004706 1.5e-14 84.0 198 37.4
Gohir.D06G213000 Gossypium hirsutum HOM05D004361 ORTHO05D004706 1.9e-14 83.6 188 39.9
Potri.004G023000 Populus trichocarpa HOM05D004361 ORTHO05D004706 1.9e-14 83.6 180 38.3
Dinv17836 Davidia involucrata HOM05D004361 ORTHO05D004706 3.3e-14 82.8 193 38.9
Gorai.010G253100 Gossypium raimondii HOM05D004361 ORTHO05D004706 3.3e-14 82.8 195 39.0
Actinidia26950 Actinidia chinensis HOM05D004361 ORTHO05D004706 4.3e-14 82.4 159 37.7
Lj5g0000713 Lotus japonicus HOM05D004361 ORTHO05D004706 5.6e-14 82.0 192 37.5
Eucgr.D00816 Eucalyptus grandis HOM05D004361 ORTHO05D004706 7.3e-14 81.6 195 40.0
Peaxi162Scf00678g00313 Petunia axillaris HOM05D004361 ORTHO05D004706 7.3e-14 81.6 196 38.8
vmacro15833 Vaccinium macrocarpon HOM05D004361 ORTHO05D004706 7.3e-14 81.6 178 39.9
Lalb_Chr21g0307851 Lupinus albus HOM05D004361 ORTHO05D004706 1.6e-13 80.5 195 35.4
MD05G1340800 Malus domestica HOM05D004361 ORTHO05D004706 1.6e-13 80.5 189 39.2
Prupe.4G026600 Prunus persica HOM05D004361 ORTHO05D004706 1.6e-13 80.5 196 36.2
Sed0010653 Sechium edule HOM05D004361 ORTHO05D004706 2.1e-13 80.1 199 34.7
Glyma.01G240500 Glycine max HOM05D004361 ORTHO05D004706 2.8e-13 79.7 178 37.1
FAN21G0156 Fragaria x ananassa HOM05D004361 ORTHO05D004706 4.7e-13 79.0 190 37.4
Manes.17G034800 Manihot esculenta HOM05D004361 ORTHO05D004706 4.7e-13 79.0 197 37.1
vmacro03710 Vaccinium macrocarpon HOM05D004361 ORTHO05D004706 6.2e-13 78.6 181 37.6
arahy.Tifrunner.gnm1.ann1.Y6FWJK Arachis hypogaea HOM05D004361 ORTHO05D004706 8.1e-13 78.2 155 42.6
Phvul.007G051800 Phaseolus vulgaris HOM05D004361 ORTHO05D004706 1.1e-12 77.8 186 35.5
Psat6g210400 Pisum sativum HOM05D004361 ORTHO05D004706 1.1e-12 77.8 180 37.8
Sabra11G0017100 Salix brachista HOM05D004361 ORTHO05D004706 1.4e-12 77.4 154 42.2
Hund21376 Selenicereus undatus HOM05D004361 ORTHO05D004706 1.8e-12 77.0 185 38.9
FvH4_3g02690 Fragaria vesca HOM05D004361 ORTHO05D004706 2.4e-12 76.6 190 36.3
FAN25G3407 Fragaria x ananassa HOM05D004361 ORTHO05D004706 2.4e-12 76.6 188 35.6
TAR629G1557 Trochodendron aralioides HOM05D004361 ORTHO05D004706 2.4e-12 76.6 200 35.5
Hma1.2p1_0091F.1_g046140 Hydrangea macrophylla HOM05D004361 ORTHO05D004706 3.1e-12 76.3 177 39.5
Actinidia11836 Actinidia chinensis HOM05D004361 ORTHO05D004706 5.2e-12 75.5 175 40.6
Sopen02g024830 Solanum pennellii HOM05D004361 ORTHO05D004706 5.2e-12 75.5 188 35.1
Solyc02g080110.3 Solanum lycopersicum HOM05D004361 ORTHO05D004706 6.8e-12 75.1 174 37.4
CANSAT56G2280 Cannabis sativa HOM05D004361 ORTHO05D004706 8.9e-12 74.7 191 39.3
CiPaw.10G068100 Carya illinoinensis HOM05D004361 ORTHO05D004706 8.9e-12 74.7 186 38.2
Sed0011498 Sechium edule HOM05D004361 ORTHO05D004706 8.9e-12 74.7 191 36.6
MSTRG.7243 Avicennia marina HOM05D004361 ORTHO05D004706 1.2e-11 74.3 180 34.4
AUR62022017 Chenopodium quinoa HOM05D004361 ORTHO05D004706 1.2e-11 74.3 175 40.0
CsaV3_1G011080 Cucumis sativus L. HOM05D004361 ORTHO05D004706 1.5e-11 73.9 186 34.4
Lj1g0002529 Lotus japonicus HOM05D004361 ORTHO05D004706 1.5e-11 73.9 177 36.2
Glyma.11G003100 Glycine max HOM05D004361 ORTHO05D004706 2.0e-11 73.6 176 38.1
TAR626G1160 Trochodendron aralioides HOM05D004361 ORTHO05D004706 2.6e-11 73.2 196 35.2
VMungo1215G1007 Vigna mungo HOM05D004361 ORTHO05D004706 4.4e-11 72.4 191 35.6
PGR004G2667 Punica granatum HOM05D004361 ORTHO05D004706 5.8e-11 72.0 180 40.0
Rhsim02G0112300 Rhododendron simsii HOM05D004361 ORTHO05D004706 5.8e-11 72.0 181 38.7
SGA_v2.0_scaffold114G32021 Striga asiatica HOM05D004361 ORTHO05D004706 5.8e-11 72.0 173 37.0
Oeu002714.1 Olea europaea HOM05D004361 ORTHO05D004706 7.6e-11 71.6 184 33.7
Ah.14g088180 Amaranthus hybridus HOM05D004361 ORTHO05D004706 9.9e-11 71.2 181 37.0
arahy.Tifrunner.gnm1.ann1.QUZ1HU Arachis hypogaea HOM05D004361 ORTHO05D004706 1.3e-10 70.9 153 41.2
Nitab4.5_0006795g0040 Nicotiana tabacum HOM05D004361 ORTHO05D004706 2.2e-10 70.1 178 34.8
Phvul.002G049100 Phaseolus vulgaris HOM05D004361 ORTHO05D004706 2.2e-10 70.1 197 34.0
Sopen10g001370 Solanum pennellii HOM05D004361 ORTHO05D004706 1.4e-09 67.4 168 33.9
Ciclev10016643m.g Citrus clementina HOM05D004361 ORTHO05D004706 2.4e-09 66.6 154 35.7
Gohir.D10G015500 Gossypium hirsutum HOM05D004361 ORTHO05D004706 2.4e-09 66.6 180 34.4
Gorai.011G017100 Gossypium raimondii HOM05D004361 ORTHO05D004706 2.4e-09 66.6 180 34.4
MELO3C002485.2 Cucumis melo HOM05D004361 ORTHO05D004706 3.2e-09 66.2 192 33.9
ClCG03G005000 Citrullus lanatus HOM05D004361 ORTHO05D004706 4.1e-09 65.9 192 33.9
Hund23516 Selenicereus undatus HOM05D004361 ORTHO05D004706 5.4e-09 65.5 184 37.0
Sc17g0007070 Simmondsia chinensis HOM05D004361 ORTHO05D004706 9.2e-09 64.7 186 34.4
MSTRG.13161 Avicennia marina HOM05D004361 ORTHO05D004706 1.2e-08 64.3 201 32.3
Medtr5g005560 Medicago truncatula HOM05D004361 ORTHO05D004706 2.1e-08 63.5 198 35.4
TPR.G5469 Trifolium pratense HOM05D004361 ORTHO05D004706 2.7e-08 63.2 172 33.1
Cc00_g17930 Coffea canephora HOM05D004361 ORTHO05D004706 4.6e-08 62.4 187 35.3
Migut.M01277 Erythranthe guttata HOM05D004361 ORTHO05D004706 4.6e-08 62.4 172 36.6
ECA248G1765 Erigeron canadensis HOM05D004361 ORTHO05D004706 6.0e-08 62.0 177 36.7
Lsat_1_v5_gn_4_57760 Lactuca sativa HOM05D004361 ORTHO05D004706 7.8e-08 61.6 180 36.7
Lalb_Chr16g0376351 Lupinus albus HOM05D004361 ORTHO05D004706 1.0e-07 61.2 178 36.0
DCAR_008122 Daucus carota HOM05D004361 ORTHO05D004706 3.0e-07 59.7 150 38.0
Gohir.A10G015500 Gossypium hirsutum HOM05D004361 ORTHO05D004706 3.0e-07 59.7 180 35.0
Oeu026856.1 Olea europaea HOM05D004361 ORTHO05D004706 3.0e-07 59.7 184 34.2
Psat4g215200 Pisum sativum HOM05D004361 ORTHO05D004706 3.0e-07 59.7 173 35.8
Nitab4.5_0002847g0010 Nicotiana tabacum HOM05D004361 ORTHO05D004706 8.7e-07 58.2 160 38.1
TPR.G8297 Trifolium pratense HOM05D004361 ORTHO05D004706 5.6e-06 55.5 192 30.2


User provided reference genes

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