Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC01g00679 Brassica carinata HOM05D004305 ORTHO05D005159 1.7e-178 629.4 363 100.0
C03p83040 Brassica napus HOM05D004305 ORTHO05D005159 1.7e-178 629.4 363 100.0
BolC3t20584H Brassica oleracea HOM05D004305 ORTHO05D005159 5.7e-174 614.4 363 95.6
A08p14960 Brassica napus HOM05D004305 ORTHO05D005159 2.6e-150 535.8 363 87.3
BraA08t33477Z Brassica rapa HOM05D004305 ORTHO05D005159 2.6e-150 535.8 363 87.3
BcaB03g11678 Brassica carinata HOM05D004305 ORTHO05D005159 1.9e-113 413.3 405 68.1
BcaNung05413 Brassica carinata HOM05D004305 ORTHO05D005159 3.2e-92 342.8 389 61.2
BolC7t45599H Brassica oleracea HOM05D004305 ORTHO05D005159 5.4e-92 342.0 392 61.2
C07p50970 Brassica napus HOM05D004305 ORTHO05D005159 3.5e-91 339.3 391 61.4
BcaNung07356 Brassica carinata HOM05D004305 ORTHO05D005159 3.9e-90 335.9 407 60.2
BcaNung04140 Brassica carinata HOM05D004305 ORTHO05D005159 3.4e-86 322.8 424 56.1
Sp7g18970 Schrenkiella parvula HOM05D004305 ORTHO05D005159 3.8e-85 319.3 442 57.7
C01p14710 Brassica napus HOM05D004305 ORTHO05D005159 1.3e-82 310.8 424 57.1
BolC1t01423H Brassica oleracea HOM05D004305 ORTHO05D005159 1.3e-82 310.8 424 57.1
A01p12300 Brassica napus HOM05D004305 ORTHO05D005159 2.3e-82 310.1 403 59.6
BraA03t14328Z Brassica rapa HOM05D004305 ORTHO05D005159 3.0e-82 309.7 399 58.1
BraA01t01174Z Brassica rapa HOM05D004305 ORTHO05D005159 4.3e-81 305.8 402 59.5
Thhalv10025304m.g Eutrema salsugineum HOM05D004305 ORTHO05D005159 1.3e-80 304.3 421 55.6
BcaC09g51296 Brassica carinata HOM05D004305 ORTHO05D005159 1.3e-77 294.3 412 56.6
AT4G20880 Arabidopsis thaliana HOM05D004305 ORTHO05D005159 5.5e-76 288.9 417 55.6
Carub.0007s2055 Capsella rubella HOM05D004305 ORTHO05D005159 2.7e-75 286.6 440 54.3
A03p52530 Brassica napus HOM05D004305 ORTHO05D005159 3.5e-75 286.2 391 56.3
AL7G33270 Arabidopsis lyrata HOM05D004305 ORTHO05D005159 1.1e-73 281.2 428 53.7
CARHR227440 Cardamine hirsuta HOM05D004305 ORTHO05D005159 9.7e-73 278.1 430 54.0
Sp2g09190 Schrenkiella parvula HOM05D004305 ORTHO05D005159 1.6e-46 191.0 381 45.9
THA.LOC104806249 Tarenaya hassleriana HOM05D004305 ORTHO05D005159 3.8e-45 186.4 409 44.0
Aa31LG6G2950 Aethionema arabicum HOM05D004305 ORTHO05D005159 5.5e-44 182.6 445 40.7
THA.LOC104812214 Tarenaya hassleriana HOM05D004305 ORTHO05D005159 1.4e-42 177.9 432 40.7
Thhalv10003311m.g Eutrema salsugineum HOM05D004305 ORTHO05D005159 3.0e-42 176.8 376 44.4
BolC9t55570H Brassica oleracea HOM05D004305 ORTHO05D005159 2.4e-39 167.2 365 41.9
BcaC04g21838 Brassica carinata HOM05D004305 ORTHO05D005159 4.1e-39 166.4 365 41.9
C09p26810 Brassica napus HOM05D004305 ORTHO05D005159 4.1e-39 166.4 365 41.9
CARHR178780 Cardamine hirsuta HOM05D004305 ORTHO05D005159 5.9e-38 162.5 371 41.8
BcaB07g30950 Brassica carinata HOM05D004305 ORTHO05D005159 7.7e-38 162.2 368 43.5
BraA09t37708Z Brassica rapa HOM05D004305 ORTHO05D005159 2.1e-35 154.1 366 40.2
A09p21070 Brassica napus HOM05D004305 ORTHO05D005159 3.6e-35 153.3 366 40.2
BcaB07g30530 Brassica carinata HOM05D004305 ORTHO05D005159 1.2e-33 148.3 352 41.5
AL8G15540 Arabidopsis lyrata HOM05D004305 ORTHO05D005159 4.4e-33 146.4 372 41.7
BraA02t07875Z Brassica rapa HOM05D004305 ORTHO05D005159 6.3e-32 142.5 371 38.3
A02p28380 Brassica napus HOM05D004305 ORTHO05D005159 4.1e-31 139.8 380 38.4
C07p27080 Brassica napus HOM05D004305 ORTHO05D005159 4.1e-31 139.8 359 38.2
BcaC06g34566 Brassica carinata HOM05D004305 ORTHO05D005159 1.2e-30 138.3 359 37.9
BolC7t43238H Brassica oleracea HOM05D004305 ORTHO05D005159 1.6e-30 137.9 359 38.4
AT5G44350 Arabidopsis thaliana HOM05D004305 ORTHO05D005159 3.5e-30 136.7 370 39.7
BcaC06g31624 Brassica carinata HOM05D004305 ORTHO05D005159 6.6e-29 132.5 360 38.1
BraA06t27598Z Brassica rapa HOM05D004305 ORTHO05D005159 5.5e-28 129.4 356 40.4
Ciclev10015182m.g Citrus clementina HOM05D004305 ORTHO05D005159 9.5e-28 128.6 470 31.7
Thecc.06G003200 Theobroma cacao HOM05D004305 ORTHO05D005159 8.9e-26 122.1 418 31.6
A06p47270 Brassica napus HOM05D004305 ORTHO05D005159 9.8e-25 118.6 358 37.4
Carub.0008s0412 Capsella rubella HOM05D004305 ORTHO05D005159 9.8e-25 118.6 387 35.9
Cfa000806 Carpinus fangiana HOM05D004305 ORTHO05D005159 6.3e-24 115.9 440 31.8
C02p44970 Brassica napus HOM05D004305 ORTHO05D005159 8.3e-24 115.5 374 36.9
TWI15G0126 Tripterygium wilfordii HOM05D004305 ORTHO05D005159 1.4e-23 114.8 443 31.8
Atru.chr10.781 Acer truncatum HOM05D004305 ORTHO05D005159 9.2e-23 112.1 399 33.1
Duzib235G0167 Durio zibethinus HOM05D004305 ORTHO05D005159 9.2e-23 112.1 396 31.3
FvH4_3g10700 Fragaria vesca HOM05D004305 ORTHO05D005159 1.2e-22 111.7 445 30.1
Cpa.g.c43226 Carica papaya HOM05D004305 ORTHO05D005159 3.5e-22 110.2 435 29.9
FAN16G1832 Fragaria x ananassa HOM05D004305 ORTHO05D005159 7.8e-22 109.0 436 30.7
GSVIVG01021709001 Vitis vinifera HOM05D004305 ORTHO05D005159 7.8e-22 109.0 447 31.1
FAN11G3528 Fragaria x ananassa HOM05D004305 ORTHO05D005159 1.3e-21 108.2 441 30.2
Haze_05867 Corylus avellana HOM05D004305 ORTHO05D005159 1.7e-21 107.8 432 34.3
BcaC03g16656 Brassica carinata HOM05D004305 ORTHO05D005159 2.3e-21 107.5 287 38.0
Gohir.A06G119900 Gossypium hirsutum HOM05D004305 ORTHO05D005159 3.9e-21 106.7 371 32.3
Eucgr.D00100 Eucalyptus grandis HOM05D004305 ORTHO05D005159 1.1e-20 105.1 199 40.7
Gorai.010G144500 Gossypium raimondii HOM05D004305 ORTHO05D005159 1.1e-20 105.1 371 31.3
RcHm_v2.0_Chr5g0017411 Rosa chinensis HOM05D004305 ORTHO05D005159 1.5e-20 104.8 453 29.8
Lalb_Chr18g0058121 Lupinus albus HOM05D004305 ORTHO05D005159 3.3e-20 103.6 391 30.4
Gohir.D06G124500 Gossypium hirsutum HOM05D004305 ORTHO05D005159 4.3e-20 103.2 371 30.7
QL93p0201_0023 Quercus lobata HOM05D004305 ORTHO05D005159 5.6e-20 102.8 442 30.5
QL05p063597 Quercus lobata HOM05D004305 ORTHO05D005159 7.3e-20 102.4 442 30.5
Lsat_1_v5_gn_9_25860 Lactuca sativa HOM05D004305 ORTHO05D005159 1.2e-19 101.7 396 31.8
FAN25G2552 Fragaria x ananassa HOM05D004305 ORTHO05D005159 1.6e-19 101.3 455 29.0
CiPaw.09G142800 Carya illinoinensis HOM05D004305 ORTHO05D005159 4.7e-19 99.8 277 33.9
Prupe.4G095400 Prunus persica HOM05D004305 ORTHO05D005159 1.0e-18 98.6 263 35.7
CANSAT35G0942 Cannabis sativa HOM05D004305 ORTHO05D005159 1.8e-18 97.8 466 30.0
MD05G1269300 Malus domestica HOM05D004305 ORTHO05D005159 2.3e-18 97.4 200 42.5
Lj4g0027556 Lotus japonicus HOM05D004305 ORTHO05D005159 3.1e-18 97.1 448 29.0
SGA_v2.0_scaffold1G00275 Striga asiatica HOM05D004305 ORTHO05D005159 4.0e-18 96.7 433 30.7
Actinidia13459 Actinidia chinensis HOM05D004305 ORTHO05D005159 5.2e-18 96.3 188 39.9
FAN21G2878 Fragaria x ananassa HOM05D004305 ORTHO05D005159 5.2e-18 96.3 432 29.2
Lalb_Chr07g0189031 Lupinus albus HOM05D004305 ORTHO05D005159 1.2e-17 95.1 443 27.5
MD10G1248100 Malus domestica HOM05D004305 ORTHO05D005159 1.5e-17 94.7 247 35.2
Psat1g165840 Pisum sativum HOM05D004305 ORTHO05D005159 1.5e-17 94.7 392 30.9
Dinv06927 Davidia involucrata HOM05D004305 ORTHO05D005159 2.0e-17 94.4 203 38.4
Ca_00869_v3 Cicer arietinum L. HOM05D004305 ORTHO05D005159 2.6e-17 94.0 406 29.6
CSS0026993 Camellia sinensis var. sinensis HOM05D004305 ORTHO05D005159 4.4e-17 93.2 468 29.9
Medtr2g031350 Medicago truncatula HOM05D004305 ORTHO05D005159 7.5e-17 92.4 401 29.7
Duzib192G0088 Durio zibethinus HOM05D004305 ORTHO05D005159 9.8e-17 92.0 173 42.2
BolC2t10530H Brassica oleracea HOM05D004305 ORTHO05D005159 1.3e-16 91.7 275 36.7
Oeu040075.1 Olea europaea HOM05D004305 ORTHO05D005159 1.3e-16 91.7 320 34.7
COL.COLO4_26846 Corchorus olitorius HOM05D004305 ORTHO05D005159 1.7e-16 91.3 354 31.6
Potri.001G464300 Populus trichocarpa HOM05D004305 ORTHO05D005159 2.9e-16 90.5 448 29.2
TWI38G0672 Tripterygium wilfordii HOM05D004305 ORTHO05D005159 2.9e-16 90.5 436 32.6
DCAR_003840 Daucus carota HOM05D004305 ORTHO05D005159 3.7e-16 90.1 402 28.9
Sabra11G0141400 Salix brachista HOM05D004305 ORTHO05D005159 8.3e-16 89.0 455 26.4
Glyma.15G132400 Glycine max HOM05D004305 ORTHO05D005159 1.1e-15 88.6 404 30.0
Actinidia31373 Actinidia chinensis HOM05D004305 ORTHO05D005159 3.2e-15 87.0 197 38.1
Manes.14G124700 Manihot esculenta HOM05D004305 ORTHO05D005159 3.2e-15 87.0 472 27.1
SGA_v2.0_scaffold223G42870 Striga asiatica HOM05D004305 ORTHO05D005159 3.2e-15 87.0 392 30.1
VMungo0540G0062 Vigna mungo HOM05D004305 ORTHO05D005159 3.2e-15 87.0 389 27.8
Sed0024509 Sechium edule HOM05D004305 ORTHO05D005159 4.1e-15 86.7 186 41.9
Phvul.006G126000 Phaseolus vulgaris HOM05D004305 ORTHO05D005159 7.0e-15 85.9 398 28.1
Sabra16G0313900 Salix brachista HOM05D004305 ORTHO05D005159 9.2e-15 85.5 476 29.8
Oeu041117.1 Olea europaea HOM05D004305 ORTHO05D005159 1.2e-14 85.1 443 29.8
MSTRG.16299 Avicennia marina HOM05D004305 ORTHO05D005159 1.6e-14 84.7 470 28.1
HanXRQChr08g0237311 Helianthus annuus HOM05D004305 ORTHO05D005159 2.0e-14 84.3 379 30.1
EL10Ac4g07786 Beta vulgaris HOM05D023924 ORTHO05D023401 2.7e-14 84.0 55 70.9
PGR083G0011 Punica granatum HOM05D004305 ORTHO05D005159 3.5e-14 83.6 186 43.0
MELO3C002832.2 Cucumis melo HOM05D004305 ORTHO05D005159 4.6e-14 83.2 216 33.3
Rhsim02G0163100 Rhododendron simsii HOM05D004305 ORTHO05D005159 7.8e-14 82.4 185 38.9
AUR62014849 Chenopodium quinoa HOM05D002349 ORTHO05D002464 1.0e-13 82.0 66 62.1
Lj1P1160T59 Lonicera japonica HOM05D004305 ORTHO05D005159 1.3e-13 81.6 452 30.5
unitig_748.g8282 Utricularia gibba HOM05D004305 ORTHO05D005159 1.3e-13 81.6 275 30.5
Psat7g094000 Pisum sativum HOM05D004305 ORTHO05D005159 1.7e-13 81.3 398 28.4
Sabra16G0315300 Salix brachista HOM05D004305 ORTHO05D005159 3.0e-13 80.5 463 29.6
ClCG03G008260 Citrullus lanatus HOM05D004305 ORTHO05D005159 3.9e-13 80.1 262 33.6
ECA247G2099 Erigeron canadensis HOM05D004305 ORTHO05D005159 3.9e-13 80.1 380 32.1
Glyma.09G026200 Glycine max HOM05D004305 ORTHO05D005159 3.9e-13 80.1 420 27.6
unitig_748.g7348 Utricularia gibba HOM05D004305 ORTHO05D005159 5.0e-13 79.7 367 27.2
PSO675G0053 Papaver somniferum HOM05D004305 ORTHO05D005159 6.6e-13 79.3 248 31.0
Actinidia32347 Actinidia chinensis HOM05D004305 ORTHO05D005159 8.6e-13 79.0 107 45.8
unitig_32.g10874 Utricularia gibba HOM05D004305 ORTHO05D005159 8.6e-13 79.0 385 28.1
Nn1g07139 Nelumbo nucifera HOM05D004305 ORTHO05D005159 1.9e-12 77.8 100 52.0
Oeu060316.1 Olea europaea HOM05D004305 ORTHO05D005159 4.3e-12 76.6 455 25.5
Sc03g0008520 Simmondsia chinensis HOM05D004305 ORTHO05D005159 9.5e-12 75.5 196 36.7
Lj6g0010125 Lotus japonicus HOM05D004305 ORTHO05D005159 1.6e-11 74.7 393 28.8
Nitab4.5_0001583g0210 Nicotiana tabacum HOM05D004305 ORTHO05D005159 1.6e-11 74.7 179 38.0
HPP92_013922 Vanilla planifolia HOM05D004305 ORTHO05D005159 1.6e-11 74.7 380 29.2
MSTRG.7546 Avicennia marina HOM05D004305 ORTHO05D005159 2.1e-11 74.3 476 28.6
Sopen02g019200 Solanum pennellii HOM05D004305 ORTHO05D005159 3.6e-11 73.6 366 26.0
Sed0021635 Sechium edule HOM05D004305 ORTHO05D005159 1.4e-10 71.6 397 26.2
MELO3C007060.2 Cucumis melo HOM05D004305 ORTHO05D005159 1.8e-10 71.2 426 27.0
CsaV3_1G037140 Cucumis sativus L. HOM05D004305 ORTHO05D005159 1.8e-10 71.2 432 27.3
MBI02_g39880_MAGBIO Magnolia biondii HOM05D004305 ORTHO05D005159 2.3e-10 70.9 193 36.3
Potri.011G162400 Populus trichocarpa HOM05D004305 ORTHO05D005159 2.3e-10 70.9 485 25.2
Ah.04g165990 Amaranthus hybridus HOM05D023924 ORTHO05D023401 5.2e-10 69.7 189 35.4
Cc09_g07570 Coffea canephora HOM05D004305 ORTHO05D005159 5.2e-10 69.7 402 27.6
ClCG01G025280 Citrullus lanatus HOM05D004305 ORTHO05D005159 6.8e-10 69.3 435 27.8
Migut.M01906 Erythranthe guttata HOM05D004305 ORTHO05D005159 6.8e-10 69.3 445 29.0
Sopen02g006550 Solanum pennellii HOM05D004305 ORTHO05D005159 6.8e-10 69.3 273 33.3
Peaxi162Scf00395g00054 Petunia axillaris HOM05D004305 ORTHO05D005159 1.2e-09 68.6 415 26.3
Solyc02g070040.1 Solanum lycopersicum HOM05D004305 ORTHO05D005159 1.2e-09 68.6 369 24.9
Nn1g03508 Nelumbo nucifera HOM05D004305 ORTHO05D005159 1.5e-09 68.2 261 29.5
PGSC0003DMG400021114 Solanum tuberosum HOM05D004305 ORTHO05D005159 1.5e-09 68.2 377 27.6
Solyc02g022920.1 Solanum lycopersicum HOM05D004305 ORTHO05D005159 2.0e-09 67.8 407 28.5
CDE02G2479 Ceratophyllum demersum HOM05D006189 ORTHO05D007765 4.4e-09 66.6 55 63.6
Manes.06G058700 Manihot esculenta HOM05D004305 ORTHO05D005159 4.4e-09 66.6 481 23.9
Medtr4g094532 Medicago truncatula HOM05D004305 ORTHO05D005159 9.8e-09 65.5 373 28.2
Oeu015165.2 Olea europaea HOM05D004305 ORTHO05D005159 1.7e-08 64.7 441 27.7
PGSC0003DMG400021011 Solanum tuberosum HOM05D004305 ORTHO05D005159 2.2e-08 64.3 428 27.8
SHI24805 Sapria himalayana HOM05D004305 ORTHO05D005159 1.1e-07 62.0 140 37.1
CsaV3_6G052500 Cucumis sativus L. HOM05D004305 ORTHO05D005159 3.2e-07 60.5 411 27.3
Nn2g11492 Nelumbo nucifera HOM05D004305 ORTHO05D005159 5.4e-07 59.7 58 55.2
TPR.G30380 Trifolium pratense HOM05D004305 ORTHO05D005159 4.6e-06 56.6 250 34.4
Sed0021177 Sechium edule HOM05D004305 ORTHO05D005159 6.0e-06 56.2 54 57.4


User provided reference genes

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