Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C03p82730 Brassica napus HOM05D004959 ORTHO05D005961 2.2e-41 171.8 81 100.0
BolC3t20554H Brassica oleracea HOM05D004959 ORTHO05D005961 2.9e-38 161.4 81 96.3
BcaC01g00652 Brassica carinata HOM05D004959 ORTHO05D005961 1.5e-21 105.9 48 95.8
Thhalv10024260m.g Eutrema salsugineum HOM05D004959 ORTHO05D005961 1.2e-18 96.3 100 54.0
AT4G20060 Arabidopsis thaliana HOM05D004959 ORTHO05D005961 2.6e-18 95.1 97 54.6
BcaNung06192 Brassica carinata HOM05D004959 ORTHO05D005961 5.8e-18 94.0 97 55.7
Carub.0007s2107 Capsella rubella HOM05D004959 ORTHO05D005961 1.7e-17 92.4 95 53.7
Sp7g18520 Schrenkiella parvula HOM05D004959 ORTHO05D005961 2.4e-16 88.6 96 51.0
AL7G33790 Arabidopsis lyrata HOM05D004959 ORTHO05D005961 3.2e-16 88.2 97 51.5
A01p11860 Brassica napus HOM05D004959 ORTHO05D005961 7.0e-16 87.0 97 51.5
BraA01t01128Z Brassica rapa HOM05D004959 ORTHO05D005961 7.0e-16 87.0 97 51.5
Aa31LG6G2470 Aethionema arabicum HOM05D004959 ORTHO05D005961 2.7e-15 85.1 98 49.0
CARHR226870 Cardamine hirsuta HOM05D004959 ORTHO05D005961 2.7e-15 85.1 97 49.5
C01p14060 Brassica napus HOM05D004959 ORTHO05D005961 6.0e-15 84.0 94 50.0
BolC1t01373H Brassica oleracea HOM05D004959 ORTHO05D005961 3.3e-13 78.2 91 48.4
Sc10g0002790 Simmondsia chinensis HOM05D004959 ORTHO05D005961 1.6e-12 75.9 96 41.7
Sabra18G0102400 Salix brachista HOM05D004959 ORTHO05D005961 1.1e-11 73.2 45 71.1
Actinidia07601 Actinidia chinensis HOM05D004959 ORTHO05D005961 1.8e-11 72.4 48 68.8
CANSAT25G2352 Cannabis sativa HOM05D004959 ORTHO05D005961 2.3e-11 72.0 92 38.0
CSS0032692 Camellia sinensis var. sinensis HOM05D004959 ORTHO05D005961 4.0e-11 71.2 46 67.4
Dinv06304 Davidia involucrata HOM05D004959 ORTHO05D005961 4.0e-11 71.2 47 66.0
TAR622G1187 Trochodendron aralioides HOM05D004959 ORTHO05D005961 4.0e-11 71.2 46 67.4
Atru.chr8.666 Acer truncatum HOM05D004959 ORTHO05D005961 5.2e-11 70.9 45 62.2
Rhsim01G0101500 Rhododendron simsii HOM05D004959 ORTHO05D005961 5.2e-11 70.9 45 68.9
Dinv04263 Davidia involucrata HOM05D004959 ORTHO05D005961 6.8e-11 70.5 47 66.0
Potri.018G118800 Populus trichocarpa HOM05D004959 ORTHO05D005961 6.8e-11 70.5 45 68.9
Duzib248G0683 Durio zibethinus HOM05D004959 ORTHO05D005961 8.9e-11 70.1 46 60.9
COL.COLO4_18025 Corchorus olitorius HOM05D004959 ORTHO05D005961 1.2e-10 69.7 47 59.6
Manes.16G050600 Manihot esculenta HOM05D004959 ORTHO05D005961 1.2e-10 69.7 47 63.8
Rhsim02G0134800 Rhododendron simsii HOM05D004959 ORTHO05D005961 1.5e-10 69.3 45 68.9
Nn3g21093 Nelumbo nucifera HOM05D004959 ORTHO05D005961 2.0e-10 68.9 47 61.7
GSVIVG01032944001 Vitis vinifera HOM05D004959 ORTHO05D005961 2.0e-10 68.9 94 40.4
Ciclev10014195m.g Citrus clementina HOM05D004959 ORTHO05D005961 3.4e-10 68.2 43 67.4
Gohir.A12G049000 Gossypium hirsutum HOM05D004959 ORTHO05D005961 3.4e-10 68.2 46 58.7
PSO017G0156 Papaver somniferum HOM05D004959 ORTHO05D005961 3.4e-10 68.2 45 64.4
PGR142G3977 Punica granatum HOM05D004959 ORTHO05D005961 3.4e-10 68.2 44 63.6
Thecc.02G004800 Theobroma cacao HOM05D004959 ORTHO05D005961 3.4e-10 68.2 46 60.9
vmacro15931 Vaccinium macrocarpon HOM05D004959 ORTHO05D005961 3.4e-10 68.2 45 64.4
Gorai.008G050400 Gossypium raimondii HOM05D004959 ORTHO05D005961 4.4e-10 67.8 46 56.5
Cfa000659 Carpinus fangiana HOM05D004959 ORTHO05D005961 5.8e-10 67.4 46 56.5
HPP92_024644 Vanilla planifolia HOM05D004959 ORTHO05D005961 7.5e-10 67.0 44 68.2
Gohir.D12G047700 Gossypium hirsutum HOM05D004959 ORTHO05D005961 9.9e-10 66.6 46 54.3
PSO478G1937 Papaver somniferum HOM05D004959 ORTHO05D005961 9.9e-10 66.6 45 62.2
Cpa.g.sc30.122 Carica papaya HOM05D004959 ORTHO05D005961 1.3e-09 66.2 45 62.2
Lj3A850G96 Lonicera japonica HOM05D004959 ORTHO05D005961 1.7e-09 65.9 47 66.0
Zm00001eb126950 Zea mays HOM05D004959 ORTHO05D005961 1.7e-09 65.9 46 60.9
QL04p014830 Quercus lobata HOM05D004959 ORTHO05D005961 2.2e-09 65.5 43 65.1
PGSC0003DMG400003329 Solanum tuberosum HOM05D004959 ORTHO05D005961 2.2e-09 65.5 47 59.6
Glyma.19G032700 Glycine max HOM05D004959 ORTHO05D005961 2.9e-09 65.1 45 66.7
QL04p014466 Quercus lobata HOM05D004959 ORTHO05D005961 2.9e-09 65.1 43 62.8
Nitab4.5_0010326g0010 Nicotiana tabacum HOM05D004959 ORTHO05D005961 3.7e-09 64.7 47 59.6
TWI63G1138 Tripterygium wilfordii HOM05D004959 ORTHO05D005961 3.7e-09 64.7 44 63.6
Cc04_g10880 Coffea canephora HOM05D004959 ORTHO05D005961 4.9e-09 64.3 47 57.4
Nitab4.5_0000036g0080 Nicotiana tabacum HOM05D004959 ORTHO05D005961 4.9e-09 64.3 47 59.6
Oeu021359.1 Olea europaea HOM05D004959 ORTHO05D005961 4.9e-09 64.3 44 61.4
Oeu021362.1 Olea europaea HOM05D004959 ORTHO05D005961 4.9e-09 64.3 44 61.4
Peaxi162Scf00449g00320 Petunia axillaris HOM05D004959 ORTHO05D005961 4.9e-09 64.3 47 59.6
ClCG09G011850 Citrullus lanatus HOM05D004959 ORTHO05D005961 6.4e-09 63.9 43 62.8
Solyc02g064590.2 Solanum lycopersicum HOM05D004959 ORTHO05D005961 8.3e-09 63.5 46 56.5
Solyc02g064620.2 Solanum lycopersicum HOM05D004959 ORTHO05D005961 8.3e-09 63.5 46 56.5
Sopen02g014720 Solanum pennellii HOM05D004959 ORTHO05D005961 1.1e-08 63.2 46 56.5
CsaV3_5G015760 Cucumis sativus L. HOM05D004959 ORTHO05D005961 1.4e-08 62.8 47 55.3
Phvul.004G026300 Phaseolus vulgaris HOM05D004959 ORTHO05D005961 1.4e-08 62.8 45 64.4
SHI28141 Sapria himalayana HOM05D004959 ORTHO05D005961 1.4e-08 62.8 43 55.8
VMungo0464G0163 Vigna mungo HOM05D004959 ORTHO05D005961 1.4e-08 62.8 45 64.4
MELO3C026444.2 Cucumis melo HOM05D004959 ORTHO05D005961 1.9e-08 62.4 43 58.1
Glyma.13G054500 Glycine max HOM05D004959 ORTHO05D005961 1.9e-08 62.4 45 64.4
Hma1.2p1_0137F.1_g062550 Hydrangea macrophylla HOM05D004959 ORTHO05D005961 1.9e-08 62.4 47 59.6
Hma1.2p1_0286F.1_g114200 Hydrangea macrophylla HOM05D004959 ORTHO05D005961 3.2e-08 61.6 47 59.6
Haze_06165 Corylus avellana HOM05D004959 ORTHO05D005961 5.4e-08 60.8 42 59.5
Sed0018634 Sechium edule HOM05D004959 ORTHO05D005961 5.4e-08 60.8 43 58.1
Migut.E00612 Erythranthe guttata HOM05D004959 ORTHO05D005961 9.2e-08 60.1 44 63.6
Aqoxy5G03195 Aquilegia oxysepala HOM05D004959 ORTHO05D005961 1.6e-07 59.3 46 56.5
Migut.E00705 Erythranthe guttata HOM05D004959 ORTHO05D005961 1.6e-07 59.3 45 62.2
Aqoxy3G03508 Aquilegia oxysepala HOM05D004959 ORTHO05D005961 2.1e-07 58.9 46 54.3
DCAR_026905 Daucus carota HOM05D004959 ORTHO05D005961 1.0e-06 56.6 36 69.4
Prupe.3G104300 Prunus persica HOM05D004959 ORTHO05D005961 1.3e-06 56.2 45 57.8
SGA_v2.0_scaffold36G14263 Striga asiatica HOM05D004959 ORTHO05D005961 1.3e-06 56.2 43 58.1
unitig_46.g18488 Utricularia gibba HOM05D004959 ORTHO05D005961 3.9e-06 54.7 43 53.5


User provided reference genes

Program Settings