Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C03p80510 Brassica napus HOM05D003744 ORTHO05D004327 1.1e-127 459.9 230 100.0
BcaC01g00486 Brassica carinata HOM05D003744 ORTHO05D004327 1.4e-98 363.2 223 85.7
A08p21950 Brassica napus HOM05D003744 ORTHO05D004327 2.2e-75 286.2 214 74.8
Carub.0007s1748 Capsella rubella HOM05D003744 ORTHO05D004327 2.3e-72 276.2 245 63.7
C01p18750 Brassica napus HOM05D003744 ORTHO05D004327 1.5e-71 273.5 236 66.9
Sp7g21590 Schrenkiella parvula HOM05D003744 ORTHO05D004327 1.5e-71 273.5 237 67.1
BcaC09g50959 Brassica carinata HOM05D003744 ORTHO05D004327 2.6e-71 272.7 236 66.9
BolC1t01805H Brassica oleracea HOM05D003744 ORTHO05D004327 2.6e-71 272.7 236 66.9
BcaNung01074 Brassica carinata HOM05D003744 ORTHO05D004327 1.1e-69 267.3 235 65.5
AT4G23660 Arabidopsis thaliana HOM05D003744 ORTHO05D004327 3.1e-69 265.8 247 61.5
Thhalv10025345m.g Eutrema salsugineum HOM05D003744 ORTHO05D004327 4.1e-69 265.4 238 65.1
A01p14960 Brassica napus HOM05D003744 ORTHO05D004327 5.4e-69 265.0 239 64.4
BraA01t01437Z Brassica rapa HOM05D003744 ORTHO05D004327 5.4e-69 265.0 238 65.1
AL7G29700 Arabidopsis lyrata HOM05D003744 ORTHO05D004327 2.0e-68 263.1 247 63.2
THA.LOC104814817 Tarenaya hassleriana HOM05D003744 ORTHO05D004327 1.6e-65 253.4 242 61.6
CARHR231030 Cardamine hirsuta HOM05D003744 ORTHO05D004327 6.1e-65 251.5 230 63.5
Aa31LG9G10990 Aethionema arabicum HOM05D003744 ORTHO05D004327 5.7e-63 245.0 239 59.8
Aa31LG6G6900 Aethionema arabicum HOM05D003744 ORTHO05D004327 2.8e-62 242.7 241 59.8
BcaNung03181 Brassica carinata HOM05D003744 ORTHO05D004327 6.1e-57 224.9 237 59.5
BraA03t14530Z Brassica rapa HOM05D003744 ORTHO05D004327 1.0e-56 224.2 236 59.3
A03p54630 Brassica napus HOM05D003744 ORTHO05D004327 1.5e-55 220.3 236 58.9
BcaNung03441 Brassica carinata HOM05D003744 ORTHO05D004327 1.3e-54 217.2 207 63.8
C07p52950 Brassica napus HOM05D003744 ORTHO05D004327 1.3e-54 217.2 207 63.8
BolC7t45794H Brassica oleracea HOM05D003744 ORTHO05D004327 2.9e-54 216.1 207 63.3
MD15G1355200 Malus domestica HOM05D003744 ORTHO05D004327 6.4e-54 214.9 205 59.5
Prupe.4G276200 Prunus persica HOM05D003744 ORTHO05D004327 4.1e-53 212.2 215 59.5
CSS0044819 Camellia sinensis var. sinensis HOM05D003744 ORTHO05D004327 2.0e-52 209.9 189 62.4
Sc23g0003470 Simmondsia chinensis HOM05D003744 ORTHO05D004327 4.6e-52 208.8 188 61.2
Prupe.1G346400 Prunus persica HOM05D003744 ORTHO05D004327 6.0e-52 208.4 214 58.9
VMungo1383G1042 Vigna mungo HOM05D003744 ORTHO05D004327 6.0e-52 208.4 204 57.8
GSVIVG01012037001 Vitis vinifera HOM05D003744 ORTHO05D004327 1.0e-51 207.6 214 56.1
TWI53G1336 Tripterygium wilfordii HOM05D003744 ORTHO05D004327 1.3e-51 207.2 189 61.4
Ciclev10031746m.g Citrus clementina HOM05D003744 ORTHO05D004327 1.7e-51 206.8 200 59.0
Haze_11743 Corylus avellana HOM05D003744 ORTHO05D004327 1.7e-51 206.8 197 59.4
Manes.01G040712 Manihot esculenta HOM05D003744 ORTHO05D004327 1.7e-51 206.8 206 56.8
Cc04_g13930 Coffea canephora HOM05D003744 ORTHO05D004327 2.3e-51 206.5 194 60.3
Cfa008732 Carpinus fangiana HOM05D003744 ORTHO05D004327 5.0e-51 205.3 197 59.4
Glyma.18G216400 Glycine max HOM05D003744 ORTHO05D004327 5.0e-51 205.3 192 59.9
FvH4_4g36840 Fragaria vesca HOM05D003744 ORTHO05D004327 6.6e-51 204.9 177 63.3
Lalb_Chr12g0205351 Lupinus albus HOM05D003744 ORTHO05D004327 8.6e-51 204.5 196 58.7
Ca_07785_v3 Cicer arietinum L. HOM05D003744 ORTHO05D004327 1.1e-50 204.1 183 64.5
Potri.005G093700 Populus trichocarpa HOM05D003744 ORTHO05D004327 1.9e-50 203.4 201 57.7
Dinv17603 Davidia involucrata HOM05D003744 ORTHO05D004327 3.3e-50 202.6 193 59.1
Phvul.008G080300 Phaseolus vulgaris HOM05D003744 ORTHO05D004327 4.3e-50 202.2 199 57.3
Rhsim09G0044700 Rhododendron simsii HOM05D003744 ORTHO05D004327 4.3e-50 202.2 190 60.0
Migut.I00018 Erythranthe guttata HOM05D003744 ORTHO05D004327 5.6e-50 201.8 191 60.2
RcHm_v2.0_Chr5g0044851 Rosa chinensis HOM05D003744 ORTHO05D004327 5.6e-50 201.8 203 57.1
Sabra05G0077500 Salix brachista HOM05D003744 ORTHO05D004327 5.6e-50 201.8 202 56.9
CANSAT78G0298 Cannabis sativa HOM05D003744 ORTHO05D004327 7.3e-50 201.4 236 50.8
CiPaw.05G168300 Carya illinoinensis HOM05D003744 ORTHO05D004327 7.3e-50 201.4 203 57.6
PGSC0003DMG400024499 Solanum tuberosum HOM05D003744 ORTHO05D004327 7.3e-50 201.4 188 58.5
COL.COLO4_10100 Corchorus olitorius HOM05D003744 ORTHO05D004327 9.5e-50 201.1 203 57.6
Thecc.02G161400 Theobroma cacao HOM05D003744 ORTHO05D004327 1.2e-49 200.7 244 52.9
arahy.Tifrunner.gnm1.ann1.DDPE54 Arachis hypogaea HOM05D003744 ORTHO05D004327 1.6e-49 200.3 200 57.5
Lj1g0013770 Lotus japonicus HOM05D003744 ORTHO05D004327 1.6e-49 200.3 192 60.4
Aqoxy1G00571 Aquilegia oxysepala HOM05D003744 ORTHO05D004327 2.1e-49 199.9 187 60.4
MSTRG.11446 Avicennia marina HOM05D003744 ORTHO05D004327 2.1e-49 199.9 225 53.8
PGR044G0777 Punica granatum HOM05D003744 ORTHO05D004327 2.1e-49 199.9 205 57.1
Gohir.A12G134500 Gossypium hirsutum HOM05D003744 ORTHO05D004327 2.8e-49 199.5 197 59.9
RhsimUnG0157000 Rhododendron simsii HOM05D003744 ORTHO05D004327 2.8e-49 199.5 204 57.4
Gorai.008G149600 Gossypium raimondii HOM05D003744 ORTHO05D004327 3.6e-49 199.1 197 59.4
Nn2g14543 Nelumbo nucifera HOM05D003744 ORTHO05D004327 3.6e-49 199.1 182 61.0
RcHm_v2.0_Chr4g0446591 Rosa chinensis HOM05D003744 ORTHO05D004327 3.6e-49 199.1 205 56.6
Solyc03g114300.4 Solanum lycopersicum HOM05D003744 ORTHO05D004327 3.6e-49 199.1 188 57.4
arahy.Tifrunner.gnm1.ann1.G2KDP7 Arachis hypogaea HOM05D003744 ORTHO05D004327 4.7e-49 198.7 200 57.0
Aqoxy5G02199 Aquilegia oxysepala HOM05D003744 ORTHO05D004327 6.2e-49 198.4 187 59.9
Aqoxy94s001 Aquilegia oxysepala HOM05D003744 ORTHO05D004327 6.2e-49 198.4 187 59.9
Aqoxy94s003 Aquilegia oxysepala HOM05D003744 ORTHO05D004327 6.2e-49 198.4 187 59.9
Gohir.D12G138100 Gossypium hirsutum HOM05D003744 ORTHO05D004327 6.2e-49 198.4 197 59.4
QL03p058539 Quercus lobata HOM05D003744 ORTHO05D004327 6.2e-49 198.4 199 57.8
EL10Ac7g17368 Beta vulgaris HOM05D003744 ORTHO05D004327 8.0e-49 198.0 188 58.5
PSO384G3023 Papaver somniferum HOM05D003744 ORTHO05D004327 8.0e-49 198.0 190 60.0
SGA_v2.0_scaffold90G27943 Striga asiatica HOM05D003744 ORTHO05D004327 8.0e-49 198.0 191 58.6
AUR62036656 Chenopodium quinoa HOM05D003744 ORTHO05D004327 1.1e-48 197.6 191 57.6
Duzib132G0191 Durio zibethinus HOM05D003744 ORTHO05D004327 1.1e-48 197.6 191 58.1
Medtr7g073970 Medicago truncatula HOM05D003744 ORTHO05D004327 1.4e-48 197.2 208 54.3
CsaV3_3G031430 Cucumis sativus L. HOM05D003744 ORTHO05D004327 1.8e-48 196.8 215 54.9
Lsat_1_v5_gn_6_17921 Lactuca sativa HOM05D003744 ORTHO05D004327 1.8e-48 196.8 173 62.4
MELO3C024026.2 Cucumis melo HOM05D003744 ORTHO05D004327 3.1e-48 196.1 190 58.9
Os08g0322600 Oryza sativa ssp. japonica HOM05D003744 ORTHO05D004327 3.1e-48 196.1 183 57.9
Prupe.1G346500 Prunus persica HOM05D003744 ORTHO05D004327 3.1e-48 196.1 200 54.5
vmacro07295 Vaccinium macrocarpon HOM05D003744 ORTHO05D004327 3.1e-48 196.1 189 59.8
QL03p042814 Quercus lobata HOM05D003744 ORTHO05D004327 4.0e-48 195.7 179 60.3
ATR1100G008 Amborella trichopoda HOM05D003744 ORTHO05D004327 1.5e-47 193.7 175 59.4
Atru.chr11.479 Acer truncatum HOM05D003744 ORTHO05D004327 2.0e-47 193.4 172 62.8
ECA233G3748 Erigeron canadensis HOM05D003744 ORTHO05D004327 2.0e-47 193.4 175 61.7
arahy.Tifrunner.gnm1.ann1.686LQU Arachis hypogaea HOM05D003744 ORTHO05D004327 7.5e-47 191.4 200 55.5
HanXRQChr11g0332851 Helianthus annuus HOM05D003744 ORTHO05D004327 1.3e-46 190.7 176 60.2
BcaB03g12405 Brassica carinata HOM05D003744 ORTHO05D004327 2.2e-46 189.9 128 78.9
MD11G1112700 Malus domestica HOM05D003744 ORTHO05D004327 4.9e-46 188.7 200 55.5
Potri.005G093600 Populus trichocarpa HOM05D003744 ORTHO05D004327 1.4e-45 187.2 199 52.8
Sed0024199 Sechium edule HOM05D003744 ORTHO05D004327 1.4e-45 187.2 212 51.4
Peaxi162Scf00017g02835 Petunia axillaris HOM05D003744 ORTHO05D004327 3.2e-45 186.0 206 53.9
MD11G1112600 Malus domestica HOM05D003744 ORTHO05D004327 4.1e-45 185.7 177 58.2
CAN.G781.16 Capsicum annuum HOM05D003744 ORTHO05D004327 5.4e-45 185.3 116 79.3
SalBow1G2569 Salvia bowleyana HOM05D003744 ORTHO05D004327 2.1e-44 183.3 223 48.9
unitig_52.g17488 Utricularia gibba HOM05D003744 ORTHO05D004327 2.3e-43 179.9 189 57.7
AUR62034614 Chenopodium quinoa HOM05D003744 ORTHO05D004327 2.5e-42 176.4 116 75.9
Mapoly0100s0056 Marchantia polymorpha HOM05D003744 ORTHO05D004327 5.6e-42 175.3 235 50.2
DCAR_026464 Daucus carota HOM05D003744 ORTHO05D004327 2.3e-40 169.9 114 72.8
DCAR_029703 Daucus carota HOM05D003744 ORTHO05D004327 2.3e-40 169.9 114 72.8
AagrBONN_evm.TU.Sc2ySwM_340.154 Anthoceros agrestis HOM05D003744 ORTHO05D004327 1.2e-39 167.5 196 49.5
SMO164G0212 Selaginella moellendorffii HOM05D003744 ORTHO05D004327 1.2e-39 167.5 176 54.0
TAR374G1448 Trochodendron aralioides HOM05D003744 ORTHO05D004327 2.6e-39 166.4 241 45.6
ClCG10G011930 Citrullus lanatus HOM05D003744 ORTHO05D004327 4.4e-39 165.6 225 48.9
BolC3t20296H Brassica oleracea HOM05D003744 ORTHO05D004327 5.8e-39 165.2 82 97.6
PSO170G1927 Papaver somniferum HOM05D003744 ORTHO05D004327 2.2e-38 163.3 186 52.2
Thecc.02G176000 Theobroma cacao HOM05D003744 ORTHO05D004327 1.1e-37 161.0 194 49.0
Gohir.A12G137650 Gossypium hirsutum HOM05D003744 ORTHO05D004327 3.2e-37 159.5 190 47.9
Gorai.008G153000 Gossypium raimondii HOM05D003744 ORTHO05D004327 3.2e-37 159.5 200 47.5
Duzib132G0180 Durio zibethinus HOM05D003744 ORTHO05D004327 5.4e-37 158.7 176 51.7
Gohir.A12G137600 Gossypium hirsutum HOM05D003744 ORTHO05D004327 2.1e-36 156.8 200 46.5
Zm00001eb190740 Zea mays HOM05D003744 ORTHO05D004327 2.1e-36 156.8 192 47.9
Ah.15g093700 Amaranthus hybridus HOM05D003744 ORTHO05D004327 7.8e-36 154.8 181 50.3
Gohir.D12G141600 Gossypium hirsutum HOM05D003744 ORTHO05D004327 1.3e-35 154.1 200 46.5
TAR374G0876 Trochodendron aralioides HOM05D003744 ORTHO05D004327 1.3e-35 154.1 163 57.1
arahy.Tifrunner.gnm1.ann1.Z9T1G4 Arachis hypogaea HOM05D003744 ORTHO05D004327 3.0e-35 152.9 170 56.5
Sopen03g033400 Solanum pennellii HOM05D003744 ORTHO05D004327 3.0e-35 152.9 158 56.3
arahy.Tifrunner.gnm1.ann1.KM1SID Arachis hypogaea HOM05D003744 ORTHO05D004327 1.9e-34 150.2 116 69.8
Sed0012155 Sechium edule HOM05D003744 ORTHO05D004327 1.9e-34 150.2 178 53.4
Eucgr.G01369 Eucalyptus grandis HOM05D003744 ORTHO05D004327 1.6e-33 147.1 177 53.1
Cc04_g13880 Coffea canephora HOM05D003744 ORTHO05D004327 2.8e-33 146.4 174 48.9
MCO12G284 Micromonas commoda HOM05D003744 ORTHO05D004327 3.6e-33 146.0 207 45.4
CDE05G3331 Ceratophyllum demersum HOM05D003744 ORTHO05D004327 4.7e-33 145.6 191 49.2
PRCOL_00006084 Prasinoderma coloniale HOM05D003744 ORTHO05D004327 1.1e-32 144.4 116 62.9
RcHm_v2.0_Chr5g0044921 Rosa chinensis HOM05D003744 ORTHO05D004327 1.1e-32 144.4 94 75.5
Os08g0388900 Oryza sativa ssp. japonica HOM05D003744 ORTHO05D004327 5.2e-32 142.1 175 46.3
TAR374G1156 Trochodendron aralioides HOM05D003744 ORTHO05D004327 5.2e-32 142.1 93 77.4
QL08p053649 Quercus lobata HOM05D003744 ORTHO05D004327 6.8e-32 141.7 95 74.7
Lj2g0000279 Lotus japonicus HOM05D003744 ORTHO05D004327 2.2e-30 136.7 94 73.4
Lj8A264T57 Lonicera japonica HOM05D003744 ORTHO05D004327 1.4e-29 134.0 249 41.8
Cre06.g291800 Chlamydomonas reinhardtii HOM05D003744 ORTHO05D004327 7.1e-29 131.7 202 44.6
Hund23867 Selenicereus undatus HOM05D003744 ORTHO05D004327 6.0e-28 128.6 145 54.5
FAN07G0518 Fragaria x ananassa HOM05D003744 ORTHO05D004327 3.3e-26 122.9 139 53.2
CBR_g5669 Chara braunii HOM05D003744 ORTHO05D004327 1.3e-25 120.9 104 63.5
TPR.G24330 Trifolium pratense HOM05D003744 ORTHO05D004327 1.6e-25 120.6 130 56.2
Nitab4.5_0000852g0010 Nicotiana tabacum HOM05D003744 ORTHO05D004327 2.1e-25 120.2 208 40.9
Oeu024760.1 Olea europaea HOM05D003744 ORTHO05D004327 6.2e-25 118.6 152 48.7
Gohir.A12G137450 Gossypium hirsutum HOM05D003744 ORTHO05D004327 2.2e-22 110.2 148 45.3
Pp3c17_13460 Physcomitrium patens HOM05D003744 ORTHO05D004327 4.9e-22 109.0 159 44.0
Os08g0389300 Oryza sativa ssp. japonica HOM05D003744 ORTHO05D004327 2.1e-20 103.6 83 61.4
Haze_26705 Corylus avellana HOM05D003744 ORTHO05D004327 1.5e-18 97.4 110 46.4
SalBow1G6149 Salvia bowleyana HOM05D003744 ORTHO05D004327 1.9e-18 97.1 196 36.7
SEGI_19125 Sequoiadendron giganteum HOM05D003744 ORTHO05D004327 7.3e-18 95.1 77 61.0
Cfa021958 Carpinus fangiana HOM05D003744 ORTHO05D004327 1.6e-17 94.0 111 46.8
SEGI_11824 Sequoiadendron giganteum HOM05D003744 ORTHO05D004327 2.1e-17 93.6 62 75.8
TWI53G1840 Tripterygium wilfordii HOM05D003744 ORTHO05D004327 3.6e-17 92.8 218 35.3
CBR_g4211 Chara braunii HOM05D003744 ORTHO05D004327 8.4e-14 81.6 73 64.4
SEGI_31034 Sequoiadendron giganteum HOM05D003744 ORTHO05D004327 3.2e-13 79.7 56 66.1
Nitab4.5_0005862g0050 Nicotiana tabacum HOM05D003744 ORTHO05D004327 1.2e-12 77.8 236 30.9
arahy.Tifrunner.gnm1.ann1.1L5CCL Arachis hypogaea HOM05D003744 ORTHO05D004327 1.3e-11 74.3 52 67.3
TPR.G35100 Trifolium pratense HOM05D003744 ORTHO05D004327 8.7e-11 71.6 41 73.2
Medtr3g111660 Medicago truncatula HOM05D003744 ORTHO05D004327 1.9e-10 70.5 179 32.4
Cc00_g30150 Coffea canephora HOM05D003744 ORTHO05D004327 3.3e-10 69.7 51 62.7
Cc04_g13900 Coffea canephora HOM05D003744 ORTHO05D004327 1.3e-09 67.8 57 59.6
SEGI_29356 Sequoiadendron giganteum HOM05D003744 ORTHO05D004327 1.3e-09 67.8 53 60.4
Cpa.g.sc5.31 Carica papaya HOM05D003744 ORTHO05D004327 2.1e-09 67.0 41 82.9
Cc04_g13890 Coffea canephora HOM05D003744 ORTHO05D004327 2.1e-09 67.0 56 58.9
FAN17G0528 Fragaria x ananassa HOM05D003744 ORTHO05D004327 6.2e-09 65.5 120 39.2
FAN12G4043 Fragaria x ananassa HOM05D003744 ORTHO05D004327 8.1e-09 65.1 84 47.6
RcHm_v2.0_Chr5g0044971 Rosa chinensis HOM05D003744 ORTHO05D004327 1.1e-08 64.7 43 79.1
QL08p053645 Quercus lobata HOM05D003744 ORTHO05D004327 9.0e-08 61.6 115 36.5
Eucgr.H03234 Eucalyptus grandis HOM05D003744 ORTHO05D004327 2.0e-07 60.5 37 67.6
Cc00_g32230 Coffea canephora HOM05D003744 ORTHO05D004327 2.6e-07 60.1 118 37.3
MD16G1001300 Malus domestica HOM05D003744 ORTHO05D004327 3.4e-07 59.7 75 46.7
Nn2g14220 Nelumbo nucifera HOM05D003744 ORTHO05D004327 2.9e-06 56.6 41 70.7


User provided reference genes

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