Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C03p80500 Brassica napus HOM05D021543 ORTHO05D024117 4.1e-78 294.7 148 100.0
C03p34940 Brassica napus HOM05D021543 ORTHO05D024117 2.0e-77 292.4 148 99.3
BolC9t53922H Brassica oleracea HOM05D021543 ORTHO05D024117 1.3e-76 289.7 148 98.6
BolC3t15804H Brassica oleracea HOM05D021543 ORTHO05D024117 3.8e-76 288.1 148 98.6
BcaC01g04686 Brassica carinata HOM05D021543 ORTHO05D024117 1.4e-41 173.3 128 75.0
BcaC09g50359 Brassica carinata HOM05D021543 ORTHO05D094077 1.1e-30 137.1 88 80.7
PGSC0003DMG400020363 Solanum tuberosum HOM05D001183 ORTHO05D004167 7.1e-14 81.3 69 60.9
MSTRG.26791 Avicennia marina HOM05D001183 ORTHO05D004167 1.2e-13 80.5 69 59.4
FAN02G0621 Fragaria x ananassa HOM05D001183 ORTHO05D004167 1.6e-13 80.1 69 59.4
FAN09G0281 Fragaria x ananassa HOM05D001183 ORTHO05D004167 1.6e-13 80.1 69 59.4
Nn2g13565 Nelumbo nucifera HOM05D001183 ORTHO05D004167 1.6e-13 80.1 69 59.4
THA.LOC104805680 Tarenaya hassleriana HOM05D001183 ORTHO05D004167 1.6e-13 80.1 69 59.4
CAN.G1233.1 Capsicum annuum HOM05D001183 ORTHO05D004167 2.1e-13 79.7 69 59.4
CiPaw.09G204200 Carya illinoinensis HOM05D001183 ORTHO05D004167 2.1e-13 79.7 69 59.4
Lalb_Chr19g0124891 Lupinus albus HOM05D001183 ORTHO05D004167 2.1e-13 79.7 69 59.4
Nitab4.5_0000008g0390 Nicotiana tabacum HOM05D001183 ORTHO05D004167 2.1e-13 79.7 69 59.4
Nitab4.5_0002152g0090 Nicotiana tabacum HOM05D001183 ORTHO05D004167 2.1e-13 79.7 69 59.4
Peaxi162Scf01302g00031 Petunia axillaris HOM05D001183 ORTHO05D004167 2.1e-13 79.7 69 59.4
Solyc09g011810.3 Solanum lycopersicum HOM05D001183 ORTHO05D004167 2.1e-13 79.7 69 59.4
Sopen09g006630 Solanum pennellii HOM05D001183 ORTHO05D004167 2.1e-13 79.7 69 59.4
GSVIVG01034037001 Vitis vinifera HOM05D001183 ORTHO05D004167 2.1e-13 79.7 69 59.4
Aa31LG10G8750 Aethionema arabicum HOM05D001183 ORTHO05D004167 2.7e-13 79.3 69 58.0
Ah.08g219800 Amaranthus hybridus HOM05D001183 ORTHO05D004167 3.5e-13 79.0 69 58.0
arahy.Tifrunner.gnm1.ann1.MSB8QE Arachis hypogaea HOM05D001183 ORTHO05D004167 3.5e-13 79.0 69 58.0
arahy.Tifrunner.gnm1.ann1.P6MJUK Arachis hypogaea HOM05D001183 ORTHO05D004167 3.5e-13 79.0 69 58.0
CARHR163950 Cardamine hirsuta HOM05D001183 ORTHO05D004167 3.5e-13 79.0 69 59.4
Cpa.g.sc56.86 Carica papaya HOM05D001183 ORTHO05D004167 3.5e-13 79.0 69 58.0
ClCG04G007360 Citrullus lanatus HOM05D001183 ORTHO05D004167 3.5e-13 79.0 69 58.0
Ciclev10011855m.g Citrus clementina HOM05D001183 ORTHO05D004167 3.5e-13 79.0 69 58.0
MELO3C003214.2 Cucumis melo HOM05D001183 ORTHO05D004167 3.5e-13 79.0 69 58.0
CsaV3_4G025880 Cucumis sativus L. HOM05D001183 ORTHO05D004167 3.5e-13 79.0 69 58.0
Duzib128G0021 Durio zibethinus HOM05D001183 ORTHO05D004167 3.5e-13 79.0 69 58.0
Gohir.A11G328500 Gossypium hirsutum HOM05D001183 ORTHO05D004167 3.5e-13 79.0 69 58.0
Gohir.D11G347400 Gossypium hirsutum HOM05D001183 ORTHO05D004167 3.5e-13 79.0 69 58.0
Gorai.007G377800 Gossypium raimondii HOM05D001183 ORTHO05D004167 3.5e-13 79.0 69 58.0
Manes.08G083500 Manihot esculenta HOM05D001183 ORTHO05D004167 3.5e-13 79.0 69 58.0
Nn2g11323 Nelumbo nucifera HOM05D001183 ORTHO05D004167 3.5e-13 79.0 69 58.0
Oeu009907.1 Olea europaea HOM05D001183 ORTHO05D004167 3.5e-13 79.0 69 58.0
Oeu018339.1 Olea europaea HOM05D001183 ORTHO05D004167 3.5e-13 79.0 69 58.0
Oeu018343.1 Olea europaea HOM05D001183 ORTHO05D004167 3.5e-13 79.0 69 58.0
Hund03757 Selenicereus undatus HOM05D001183 ORTHO05D004167 3.5e-13 79.0 69 58.0
Sc22g0004570 Simmondsia chinensis HOM05D001183 ORTHO05D004167 3.5e-13 79.0 69 59.4
Thecc.05G025400 Theobroma cacao HOM05D001183 ORTHO05D004167 3.5e-13 79.0 69 58.0
vmacro08612 Vaccinium macrocarpon HOM05D001183 ORTHO05D004167 3.5e-13 79.0 69 58.0
EL10Ac5g11539 Beta vulgaris HOM05D001183 ORTHO05D004167 4.6e-13 78.6 69 58.0
CSS0033979 Camellia sinensis var. sinensis HOM05D001183 ORTHO05D004167 4.6e-13 78.6 69 58.0
CSS0042699 Camellia sinensis var. sinensis HOM05D001183 ORTHO05D004167 4.6e-13 78.6 69 58.0
Cfa017280 Carpinus fangiana HOM05D001183 ORTHO05D004167 4.6e-13 78.6 69 58.0
CDE02G4465 Ceratophyllum demersum HOM05D001183 ORTHO05D004167 4.6e-13 78.6 69 58.0
CDE09G1254 Ceratophyllum demersum HOM05D001183 ORTHO05D004167 4.6e-13 78.6 69 58.0
Dinv37097 Davidia involucrata HOM05D001183 ORTHO05D004167 4.6e-13 78.6 69 58.0
FvH4_6g12370 Fragaria vesca HOM05D001183 ORTHO05D004167 4.6e-13 78.6 69 58.0
FAN14G2942 Fragaria x ananassa HOM05D001183 ORTHO05D004167 4.6e-13 78.6 69 58.0
HanXRQChr04g0124671 Helianthus annuus HOM05D001183 ORTHO05D004167 4.6e-13 78.6 69 58.0
MD04G1143400 Malus domestica HOM05D001183 ORTHO05D004167 4.6e-13 78.6 69 58.0
MD12G1157600 Malus domestica HOM05D001183 ORTHO05D004167 4.6e-13 78.6 69 58.0
Psat3g134680 Pisum sativum HOM05D001183 ORTHO05D004167 4.6e-13 78.6 69 58.0
Potri.016G106900 Populus trichocarpa HOM05D001183 ORTHO05D004167 4.6e-13 78.6 69 58.0
Prupe.6G267900 Prunus persica HOM05D001183 ORTHO05D004167 4.6e-13 78.6 69 58.0
Sed0003926 Sechium edule HOM05D001183 ORTHO05D004167 4.6e-13 78.6 69 58.0
TWI74G0747 Tripterygium wilfordii HOM05D001183 ORTHO05D004167 4.6e-13 78.6 69 58.0
TAR623G0815 Trochodendron aralioides HOM05D001183 ORTHO05D004167 4.6e-13 78.6 69 58.0
ATR0618G311 Amborella trichopoda HOM05D001183 ORTHO05D004167 6.0e-13 78.2 69 58.0
Cc06_g01860 Coffea canephora HOM05D001183 ORTHO05D004167 6.0e-13 78.2 69 58.0
QL07p027569 Quercus lobata HOM05D001183 ORTHO05D004167 6.0e-13 78.2 69 58.0
AL5G35060 Arabidopsis lyrata HOM05D001183 ORTHO05D004167 7.8e-13 77.8 69 58.0
BcaB01g00223 Brassica carinata HOM05D001183 ORTHO05D004167 7.8e-13 77.8 69 58.0
BcaB02g08469 Brassica carinata HOM05D001183 ORTHO05D004167 7.8e-13 77.8 69 58.0
BcaC02g09099 Brassica carinata HOM05D001183 ORTHO05D004167 7.8e-13 77.8 69 58.0
BcaC07g39754 Brassica carinata HOM05D001183 ORTHO05D004167 7.8e-13 77.8 69 58.0
A04p05710 Brassica napus HOM05D001183 ORTHO05D004167 7.8e-13 77.8 69 58.0
A09p46950 Brassica napus HOM05D001183 ORTHO05D004167 7.8e-13 77.8 69 58.0
C04p38410 Brassica napus HOM05D001183 ORTHO05D004167 7.8e-13 77.8 69 58.0
C08p29270 Brassica napus HOM05D001183 ORTHO05D004167 7.8e-13 77.8 69 58.0
BolC4t25417H Brassica oleracea HOM05D001183 ORTHO05D004167 7.8e-13 77.8 69 58.0
BolC8t50530H Brassica oleracea HOM05D001183 ORTHO05D004167 7.8e-13 77.8 69 58.0
BraA04t16265Z Brassica rapa HOM05D001183 ORTHO05D004167 7.8e-13 77.8 69 58.0
BraA09t40161Z Brassica rapa HOM05D001183 ORTHO05D004167 7.8e-13 77.8 69 58.0
DCAR_010436 Daucus carota HOM05D001183 ORTHO05D004167 7.8e-13 77.8 69 58.0
Glyma.07G142700 Glycine max HOM05D001183 ORTHO05D004167 7.8e-13 77.8 69 56.5
Glyma.18G193600 Glycine max HOM05D001183 ORTHO05D004167 7.8e-13 77.8 69 56.5
Lalb_Chr01g0022841 Lupinus albus HOM05D001183 ORTHO05D004167 7.8e-13 77.8 69 58.0
Manes.09G100000 Manihot esculenta HOM05D001183 ORTHO05D004167 7.8e-13 77.8 69 58.0
Phvul.008G112000 Phaseolus vulgaris HOM05D001183 ORTHO05D004167 7.8e-13 77.8 69 56.5
Rhsim04G0164800 Rhododendron simsii HOM05D001183 ORTHO05D004167 7.8e-13 77.8 69 56.5
Sabra16G0105600 Salix brachista HOM05D001183 ORTHO05D004167 7.8e-13 77.8 69 56.5
VMungo1383G0451 Vigna mungo HOM05D001183 ORTHO05D004167 7.8e-13 77.8 69 56.5
AUR62042942 Chenopodium quinoa HOM05D001183 ORTHO05D004167 1.0e-12 77.4 69 56.5
Haze_20923 Corylus avellana HOM05D001183 ORTHO05D004167 1.0e-12 77.4 69 56.5
Eucgr.B02755 Eucalyptus grandis HOM05D001183 ORTHO05D004167 1.0e-12 77.4 69 56.5
HanXRQChr06g0176631 Helianthus annuus HOM05D001183 ORTHO05D004167 1.0e-12 77.4 69 56.5
Lsat_1_v5_gn_8_80661 Lactuca sativa HOM05D001183 ORTHO05D004167 1.0e-12 77.4 69 56.5
RcHm_v2.0_Chr3g0464191 Rosa chinensis HOM05D001183 ORTHO05D004167 1.0e-12 77.4 69 56.5
Aqoxy1G00766 Aquilegia oxysepala HOM05D001183 ORTHO05D004167 1.3e-12 77.0 63 63.5
PGR031G3138 Punica granatum HOM05D001183 ORTHO05D004167 1.3e-12 77.0 46 73.9
Actinidia05339 Actinidia chinensis HOM05D001183 ORTHO05D004167 1.7e-12 76.6 69 55.1
AagrBONN_evm.TU.Sc2ySwM_368.994 Anthoceros agrestis HOM05D001183 ORTHO05D004167 1.7e-12 76.6 69 56.5
Carub.0005s2064 Capsella rubella HOM05D001183 ORTHO05D004167 1.7e-12 76.6 69 56.5
Lj2A83T79 Lonicera japonica HOM05D001183 ORTHO05D004167 1.7e-12 76.6 69 56.5
MBI05_g36621_MAGBIO Magnolia biondii HOM05D001183 ORTHO05D004167 2.3e-12 76.3 69 56.5
MBI05_g44431_MAGBIO Magnolia biondii HOM05D001183 ORTHO05D004167 2.3e-12 76.3 69 56.5
SpUn1292_0010 Schrenkiella parvula HOM05D001183 ORTHO05D004167 2.3e-12 76.3 69 56.5
Ca_27240_v3 Cicer arietinum L. HOM05D001183 ORTHO05D004167 3.0e-12 75.9 69 56.5
Sp5g18220 Schrenkiella parvula HOM05D001183 ORTHO05D004167 3.0e-12 75.9 46 71.7
AT3G54050 Arabidopsis thaliana HOM05D001183 ORTHO05D004167 3.9e-12 75.5 69 55.1
COL.COLO4_14651 Corchorus olitorius HOM05D001183 ORTHO05D004167 3.9e-12 75.5 69 56.5
Pp3c7_15760 Physcomitrium patens HOM05D001183 ORTHO05D004167 3.9e-12 75.5 69 55.1
PGSC0003DMG400019189 Solanum tuberosum HOM05D001183 ORTHO05D004167 3.9e-12 75.5 69 56.5
SGA_v2.0_scaffold85G26794 Striga asiatica HOM05D001183 ORTHO05D004167 3.9e-12 75.5 69 56.5
unitig_0.g1463 Utricularia gibba HOM05D001183 ORTHO05D004167 3.9e-12 75.5 69 56.5
Actinidia01123 Actinidia chinensis HOM05D001183 ORTHO05D021154 5.1e-12 75.1 46 69.6
CANSAT35G1054 Cannabis sativa HOM05D001183 ORTHO05D004167 5.1e-12 75.1 70 58.6
ECA236G2478 Erigeron canadensis HOM05D002554 ORTHO05D004167 5.1e-12 75.1 69 56.5
Thhalv10010414m.g Eutrema salsugineum HOM05D001183 ORTHO05D004167 6.6e-12 74.7 69 56.5
HPP92_019453 Vanilla planifolia HOM05D001183 ORTHO05D004167 6.6e-12 74.7 65 56.9
AUR62025783 Chenopodium quinoa HOM05D001183 ORTHO05D004167 8.6e-12 74.3 69 55.1
Medtr7g066120 Medicago truncatula HOM05D001183 ORTHO05D004167 8.6e-12 74.3 69 55.1
CAN.G351.12 Capsicum annuum HOM05D001183 ORTHO05D004167 1.1e-11 73.9 69 55.1
Migut.J00245 Erythranthe guttata HOM05D001183 ORTHO05D004167 1.1e-11 73.9 63 60.3
DCAR_028790 Daucus carota HOM05D001183 ORTHO05D004167 1.5e-11 73.6 55 61.8
SEGI_03478 Sequoiadendron giganteum HOM05D001183 ORTHO05D004167 1.5e-11 73.6 68 55.9
Lj1g0015247 Lotus japonicus HOM05D001183 ORTHO05D004167 1.9e-11 73.2 69 53.6
Os03g0267300 Oryza sativa ssp. japonica HOM05D001183 ORTHO05D004167 1.9e-11 73.2 69 53.6
Sp5g08330 Schrenkiella parvula HOM05D001183 ORTHO05D004167 1.9e-11 73.2 69 56.5
Sopen10g036130 Solanum pennellii HOM05D001183 ORTHO05D004167 1.9e-11 73.2 46 69.6
EL10Ac5g11545 Beta vulgaris HOM05D001183 ORTHO05D004167 2.5e-11 72.8 60 61.7
Peaxi162Scf00014g00926 Petunia axillaris HOM05D001183 ORTHO05D004167 2.5e-11 72.8 69 55.1
Pp3c19_12890 Physcomitrium patens HOM05D001183 ORTHO05D004167 2.5e-11 72.8 69 53.6
Atru.chr8.2119 Acer truncatum HOM05D001183 ORTHO05D004167 4.3e-11 72.0 69 53.6
Nitab4.5_0007025g0040 Nicotiana tabacum HOM05D001183 ORTHO05D004167 2.1e-10 69.7 69 52.2
BcaB05g22396 Brassica carinata HOM05D001183 ORTHO05D021154 2.8e-10 69.3 45 68.9
BcaB06g25733 Brassica carinata HOM05D001183 ORTHO05D021154 2.8e-10 69.3 45 68.9
BcaB06g25735 Brassica carinata HOM05D001183 ORTHO05D021154 2.8e-10 69.3 45 68.9
Mapoly0047s0030 Marchantia polymorpha HOM05D001183 ORTHO05D004167 3.6e-10 68.9 46 65.2
Nitab4.5_0000119g0310 Nicotiana tabacum HOM05D001183 ORTHO05D004167 4.7e-10 68.6 69 50.7
SMO140G0105 Selaginella moellendorffii HOM05D001183 ORTHO05D004167 4.7e-10 68.6 46 63.0
TPR.G34873 Trifolium pratense HOM05D001183 ORTHO05D004167 6.2e-10 68.2 69 52.2
Zm00001eb011940 Zea mays HOM05D001183 ORTHO05D004167 8.1e-10 67.8 69 50.7
EL10Ac5g11541 Beta vulgaris HOM05D001183 ORTHO05D021154 5.2e-09 65.1 39 74.4
EL10Ac5g11544 Beta vulgaris HOM05D001183 ORTHO05D021154 5.2e-09 65.1 39 74.4
CBR_g38775 Chara braunii HOM05D001183 ORTHO05D004167 6.8e-09 64.7 46 63.0
Migut.J00244 Erythranthe guttata HOM05D001183 ORTHO05D004167 2.2e-07 59.7 40 65.0
PSO063G2730 Papaver somniferum HOM05D001183 ORTHO05D004167 2.2e-07 59.7 63 55.6
PSO339G6277 Papaver somniferum HOM05D001183 ORTHO05D004167 2.2e-07 59.7 40 72.5
PSO513G0061 Papaver somniferum HOM05D001183 ORTHO05D004167 2.2e-07 59.7 40 72.5
Solyc10g086730.2 Solanum lycopersicum HOM05D001183 ORTHO05D004167 2.9e-07 59.3 40 65.0
Sopen10g036140 Solanum pennellii HOM05D001183 ORTHO05D004167 2.9e-07 59.3 40 65.0
PGSC0003DMG400019188 Solanum tuberosum HOM05D001183 ORTHO05D004167 2.9e-07 59.3 40 65.0
Actinidia29149 Actinidia chinensis HOM05D001183 ORTHO05D004167 3.8e-07 58.9 63 50.8
CANSAT78G2501 Cannabis sativa HOM05D001183 ORTHO05D004167 6.4e-07 58.2 63 50.8
Nitab4.5_0017865g0020 Nicotiana tabacum HOM05D001183 ORTHO05D004167 6.4e-07 58.2 40 62.5
SalBow3G3338 Salvia bowleyana HOM05D001183 ORTHO05D004167 6.4e-07 58.2 40 62.5
TAR633G0883 Trochodendron aralioides HOM05D001183 ORTHO05D004167 8.4e-07 57.8 63 50.8
Cre12.g510650 Chlamydomonas reinhardtii HOM05D001183 ORTHO05D004167 1.1e-06 57.4 64 51.6
DCAR_024043 Daucus carota HOM05D001183 ORTHO05D004167 1.1e-06 57.4 40 62.5
PSO170G6350 Papaver somniferum HOM05D001183 ORTHO05D004167 1.1e-06 57.4 39 71.8
GSVIVG01034034001 Vitis vinifera HOM05D001183 ORTHO05D004167 1.1e-06 57.4 63 47.6
CAN.G351.11 Capsicum annuum HOM05D001183 ORTHO05D004167 1.9e-06 56.6 40 62.5
Lj3A959G51 Lonicera japonica HOM05D001183 ORTHO05D004167 1.9e-06 56.6 63 50.8
PSO104G0147 Papaver somniferum HOM05D001183 ORTHO05D004167 1.9e-06 56.6 38 73.7
Cfa017279 Carpinus fangiana HOM05D001183 ORTHO05D004167 3.2e-06 55.8 63 49.2
SGA_v2.0_scaffold85G26793 Striga asiatica HOM05D001183 ORTHO05D004167 3.2e-06 55.8 40 60.0
vmacro20221 Vaccinium macrocarpon HOM05D001183 ORTHO05D004167 3.2e-06 55.8 40 60.0
Oeu044377.1 Olea europaea HOM05D001183 ORTHO05D004167 5.4e-06 55.1 65 47.7
CsaV3_4G025890 Cucumis sativus L. HOM05D001183 ORTHO05D004167 7.1e-06 54.7 40 65.0
PGR031G0288 Punica granatum HOM05D001183 ORTHO05D004167 7.1e-06 54.7 38 63.2
Sed0025550 Sechium edule HOM05D001183 ORTHO05D004167 7.1e-06 54.7 40 65.0


User provided reference genes

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