Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C03p78740 Brassica napus HOM05D009862 ORTHO05D018588 2.6e-164 582.0 301 100.0
C09p21100 Brassica napus HOM05D009862 ORTHO05D018588 6.4e-155 550.8 301 95.7
BcaC01g00346 Brassica carinata HOM05D009862 ORTHO05D018588 3.2e-154 548.5 343 86.3
A09p17710 Brassica napus HOM05D009862 ORTHO05D018588 2.1e-153 545.8 301 93.0
BolC2t11493H Brassica oleracea HOM05D009862 ORTHO05D018588 4.2e-146 521.5 301 90.0
A05p05690 Brassica napus HOM05D009862 ORTHO05D018588 1.5e-127 459.9 301 81.7
A05p19230 Brassica napus HOM05D009862 ORTHO05D018588 1.5e-127 459.9 301 81.7
BraA05t20174Z Brassica rapa HOM05D009862 ORTHO05D018588 2.0e-108 396.4 287 76.3
C09p18240 Brassica napus HOM05D009862 ORTHO05D033657 4.0e-80 302.4 156 98.7
BraA07t28641Z Brassica rapa HOM05D009862 ORTHO05D033657 6.6e-75 285.0 156 94.9
BolC3t21354H Brassica oleracea HOM05D009862 ORTHO05D033657 2.8e-65 253.1 156 84.6
A04p21840 Brassica napus HOM05D009862 ORTHO05D021984 1.1e-56 224.6 163 73.0
A03p03900 Brassica napus HOM05D009862 ORTHO05D021984 1.8e-56 223.8 160 73.8
C03p90330 Brassica napus HOM05D009862 ORTHO05D103904 1.5e-50 204.1 165 73.9
A05p12350 Brassica napus HOM05D009862 ORTHO05D016026 7.3e-42 175.3 88 98.9
A08p17330 Brassica napus HOM05D009862 ORTHO05D021984 8.1e-33 145.2 160 54.4
BraA08t33693Z Brassica rapa HOM05D009862 ORTHO05D021984 8.1e-33 145.2 160 54.4
BolC1t04023H Brassica oleracea HOM05D009862 ORTHO05D021984 1.8e-32 144.1 158 54.4
BolC1t05451H Brassica oleracea HOM05D009862 ORTHO05D021984 2.6e-31 140.2 160 53.8
BraA07t28640Z Brassica rapa HOM05D009862 ORTHO05D028059 4.0e-24 116.3 71 85.9
A05p24600 Brassica napus HOM05D003214 ORTHO05D033598 1.5e-23 114.4 61 88.5
BraA05t21345Z Brassica rapa HOM05D003214 ORTHO05D033598 1.5e-23 114.4 61 88.5
BraA08t34631Z Brassica rapa HOM05D007004 ORTHO05D009040 7.9e-20 102.1 57 94.7
BcaC01g01680 Brassica carinata HOM05D007004 ORTHO05D009040 1.1e-18 98.2 57 91.2
C03p73090 Brassica napus HOM05D007004 ORTHO05D009040 1.1e-18 98.2 57 91.2
BolC3t19604H Brassica oleracea HOM05D007004 ORTHO05D009040 1.1e-18 98.2 57 91.2
A08p26860 Brassica napus HOM05D007004 ORTHO05D009040 1.5e-18 97.8 56 91.1
Sp1g22950 Schrenkiella parvula HOM05D007004 ORTHO05D009040 3.3e-18 96.7 55 87.3
BcaB03g12035 Brassica carinata HOM05D007004 ORTHO05D009040 4.3e-18 96.3 56 92.9
Thhalv10008135m.g Eutrema salsugineum HOM05D007004 ORTHO05D009040 7.4e-18 95.5 55 85.5
BolC5t30343H Brassica oleracea HOM05D009862 ORTHO05D028059 4.8e-17 92.8 84 76.2
CARHR026230 Cardamine hirsuta HOM05D007004 ORTHO05D009040 5.3e-16 89.4 55 78.2
CARHR026200 Cardamine hirsuta HOM05D009862 ORTHO05D009040 2.6e-15 87.0 55 74.5
AT1G25290 Arabidopsis thaliana HOM05D007004 ORTHO05D009040 3.4e-15 86.7 55 74.5
Carub.0001s2526 Capsella rubella HOM05D007004 ORTHO05D009040 1.7e-14 84.3 55 76.4
BcaB05g24870 Brassica carinata HOM05D003553 ORTHO05D005072 2.2e-14 84.0 89 55.1
BcaC08g46898 Brassica carinata HOM05D003553 ORTHO05D005072 3.8e-14 83.2 88 54.5
BcaB02g06963 Brassica carinata HOM05D003553 ORTHO05D005072 4.9e-14 82.8 88 54.5
C06p48750 Brassica napus HOM05D003553 ORTHO05D005072 4.9e-14 82.8 89 53.9
A07p29260 Brassica napus HOM05D003553 ORTHO05D005072 6.4e-14 82.4 89 53.9
BraA07t30565Z Brassica rapa HOM05D003553 ORTHO05D005072 6.4e-14 82.4 89 53.9
BcaC01g03013 Brassica carinata HOM05D003553 ORTHO05D039244 8.4e-14 82.0 93 50.5
BcaC03g15524 Brassica carinata HOM05D003553 ORTHO05D005072 3.2e-13 80.1 88 52.3
BolC6t39911H Brassica oleracea HOM05D003553 ORTHO05D005072 3.2e-13 80.1 89 52.8
A02p19540 Brassica napus HOM05D003553 ORTHO05D005072 4.2e-13 79.7 89 51.7
C02p32080 Brassica napus HOM05D003553 ORTHO05D005072 4.2e-13 79.7 89 51.7
BolC2t09243H Brassica oleracea HOM05D003553 ORTHO05D005072 4.2e-13 79.7 89 51.7
BraA02t06991Z Brassica rapa HOM05D003553 ORTHO05D005072 4.2e-13 79.7 89 51.7
Thhalv10018346m.g Eutrema salsugineum HOM05D003553 ORTHO05D005072 4.2e-13 79.7 88 52.3
A05p12330 Brassica napus HOM05D009862 ORTHO05D028059 5.5e-13 79.3 51 98.0
Sp5g29830 Schrenkiella parvula HOM05D003553 ORTHO05D005072 1.2e-12 78.2 88 52.3
BraA07t31582Z Brassica rapa HOM05D003553 ORTHO05D005072 1.6e-12 77.8 89 51.7
Aa31LG4G4940 Aethionema arabicum HOM05D003553 ORTHO05D005072 2.1e-12 77.4 88 50.0
C03p02100 Brassica napus HOM05D009862 ORTHO05D096858 4.6e-12 76.3 78 53.8
AL1G40060 Arabidopsis lyrata HOM05D007004 ORTHO05D009040 6.0e-12 75.9 55 72.7
AL2G34600 Arabidopsis lyrata HOM05D003553 ORTHO05D005072 7.9e-12 75.5 86 51.2
C06p33160 Brassica napus HOM05D003553 ORTHO05D005072 1.0e-11 75.1 89 50.6
BolC6t38431H Brassica oleracea HOM05D003553 ORTHO05D005072 1.0e-11 75.1 89 50.6
Aa31LG7G9200 Aethionema arabicum HOM05D007004 ORTHO05D009040 1.8e-11 74.3 55 67.3
THA.LOC104808114 Tarenaya hassleriana HOM05D007004 ORTHO05D009040 8.7e-11 72.0 55 65.5
AT1G74710 Arabidopsis thaliana HOM05D003553 ORTHO05D005072 1.1e-10 71.6 86 48.8
A06p09090 Brassica napus HOM05D003553 ORTHO05D005072 3.3e-10 70.1 88 48.9
Carub.0002s2150 Capsella rubella HOM05D003553 ORTHO05D005072 4.3e-10 69.7 86 48.8
THA.LOC104813869 Tarenaya hassleriana HOM05D003553 ORTHO05D005072 4.3e-10 69.7 88 45.5
CARHR068010 Cardamine hirsuta HOM05D003553 ORTHO05D005072 9.6e-10 68.6 87 47.1
BcaC07g38956 Brassica carinata HOM05D003553 ORTHO05D005072 1.3e-09 68.2 88 45.5
A08p30110 Brassica napus HOM05D003553 ORTHO05D005072 1.3e-09 68.2 88 45.5
C08p19030 Brassica napus HOM05D003553 ORTHO05D005072 1.3e-09 68.2 88 45.5
BolC8t49526H Brassica oleracea HOM05D003553 ORTHO05D005072 1.3e-09 68.2 88 45.5
BraA08t34946Z Brassica rapa HOM05D003553 ORTHO05D005072 1.3e-09 68.2 88 45.5
AT1G18870 Arabidopsis thaliana HOM05D003553 ORTHO05D005072 2.1e-09 67.4 88 45.5
Sp1g16850 Schrenkiella parvula HOM05D003553 ORTHO05D005072 2.8e-09 67.0 88 45.5
Duzib132G0688 Durio zibethinus HOM05D007004 ORTHO05D009040 3.7e-09 66.6 73 45.2
BcaC05g25790 Brassica carinata HOM05D003553 ORTHO05D005072 4.8e-09 66.2 95 43.2
A06p15100 Brassica napus HOM05D003553 ORTHO05D005072 4.8e-09 66.2 88 45.5
BraA06t24624Z Brassica rapa HOM05D003553 ORTHO05D005072 4.8e-09 66.2 88 45.5
Carub.0001s1852 Capsella rubella HOM05D003553 ORTHO05D005072 4.8e-09 66.2 88 44.3
Medtr2g081010 Medicago truncatula HOM05D007004 ORTHO05D009040 6.2e-09 65.9 163 28.8
BolC5t30429H Brassica oleracea HOM05D003553 ORTHO05D005072 8.2e-09 65.5 94 43.6
Eucgr.I02721 Eucalyptus grandis HOM05D007004 ORTHO05D009040 8.2e-09 65.5 126 33.3
CARHR019520 Cardamine hirsuta HOM05D003553 ORTHO05D005072 1.1e-08 65.1 88 44.3
Gohir.A01G178100 Gossypium hirsutum HOM05D007004 ORTHO05D009040 1.4e-08 64.7 106 34.9
Gohir.D01G168900 Gossypium hirsutum HOM05D007004 ORTHO05D009040 1.4e-08 64.7 106 34.9
Thhalv10007243m.g Eutrema salsugineum HOM05D003553 ORTHO05D005072 1.8e-08 64.3 88 44.3
THA.LOC104812556 Tarenaya hassleriana HOM05D003553 ORTHO05D005072 1.8e-08 64.3 88 43.2
Gorai.002G209900 Gossypium raimondii HOM05D007004 ORTHO05D009040 2.4e-08 63.9 106 34.9
BcaB07g31908 Brassica carinata HOM05D003553 ORTHO05D005072 3.1e-08 63.5 88 44.3
Aa31LG7G3710 Aethionema arabicum HOM05D003553 ORTHO05D005072 5.3e-08 62.8 86 43.0
QL11p000234 Quercus lobata HOM05D007004 ORTHO05D009040 6.9e-08 62.4 120 34.2
Manes.10G129800 Manihot esculenta HOM05D007004 ORTHO05D009040 9.0e-08 62.0 52 55.8
BolC1t02585H Brassica oleracea HOM05D000745 ORTHO05D005072 1.2e-07 61.6 71 52.1
CSS0010890 Camellia sinensis var. sinensis HOM05D007004 ORTHO05D009040 1.5e-07 61.2 113 36.3
Dinv19362 Davidia involucrata HOM05D007004 ORTHO05D009040 2.0e-07 60.8 68 47.1
Lj9A306G63 Lonicera japonica HOM05D007004 ORTHO05D009040 2.0e-07 60.8 52 57.7
Potri.003G019500 Populus trichocarpa HOM05D007004 ORTHO05D009040 2.6e-07 60.5 46 56.5
Atru.chr6.662 Acer truncatum HOM05D007004 ORTHO05D009040 4.5e-07 59.7 50 54.0
BcaB03g12949 Brassica carinata HOM05D003553 ORTHO05D005072 4.5e-07 59.7 88 42.0
CSS0040164 Camellia sinensis var. sinensis HOM05D007004 ORTHO05D009040 4.5e-07 59.7 56 51.8
Migut.B00841 Erythranthe guttata HOM05D007004 ORTHO05D009040 4.5e-07 59.7 103 37.9
CiPaw.06G147800 Carya illinoinensis HOM05D007004 ORTHO05D009040 5.8e-07 59.3 134 31.3
Ca_01804_v3 Cicer arietinum L. HOM05D007004 ORTHO05D009040 5.8e-07 59.3 126 30.2
Ca_30469_v3 Cicer arietinum L. HOM05D007004 ORTHO05D009040 5.8e-07 59.3 126 30.2
TAR381G0113 Trochodendron aralioides HOM05D007004 ORTHO05D009040 5.8e-07 59.3 42 59.5
Ciclev10001765m.g Citrus clementina HOM05D007004 ORTHO05D009040 7.6e-07 58.9 108 36.1
Haze_01664 Corylus avellana HOM05D007004 ORTHO05D009040 1.0e-06 58.5 51 54.9
GSVIVG01022970001 Vitis vinifera HOM05D007004 ORTHO05D009040 1.0e-06 58.5 133 28.6
Nn5g28203 Nelumbo nucifera HOM05D007004 ORTHO05D009040 1.3e-06 58.2 51 52.9
PSO210G5267 Papaver somniferum HOM05D007004 ORTHO05D009040 1.3e-06 58.2 91 38.5
arahy.Tifrunner.gnm1.ann1.CRD7SK Arachis hypogaea HOM05D007004 ORTHO05D009040 1.7e-06 57.8 114 34.2
MSTRG.16523 Avicennia marina HOM05D007004 ORTHO05D009040 1.7e-06 57.8 83 39.8
ClCG09G014330 Citrullus lanatus HOM05D007004 ORTHO05D009040 1.7e-06 57.8 117 33.3
Glyma.08G185300 Glycine max HOM05D007004 ORTHO05D009040 1.7e-06 57.8 76 43.4
Oeu025684.1 Olea europaea HOM05D007004 ORTHO05D009040 1.7e-06 57.8 45 55.6
PSO170G0041 Papaver somniferum HOM05D007004 ORTHO05D009040 1.7e-06 57.8 74 39.2
arahy.Tifrunner.gnm1.ann1.Z970KM Arachis hypogaea HOM05D007004 ORTHO05D009040 2.9e-06 57.0 51 52.9
Hund12984 Selenicereus undatus HOM05D007004 ORTHO05D009040 2.9e-06 57.0 52 53.8
TPR.G32882 Trifolium pratense HOM05D007004 ORTHO05D009040 2.9e-06 57.0 103 35.0
vmacro19897 Vaccinium macrocarpon HOM05D007004 ORTHO05D009040 2.9e-06 57.0 56 48.2
Sabra03G0011000 Salix brachista HOM05D007004 ORTHO05D009040 3.8e-06 56.6 54 55.6
BcaC08g43295 Brassica carinata HOM05D003553 ORTHO05D005072 4.9e-06 56.2 37 70.3
Cc02_g22440 Coffea canephora HOM05D007004 ORTHO05D009040 4.9e-06 56.2 62 41.9
Gohir.A01G178172 Gossypium hirsutum HOM05D007004 ORTHO05D009040 4.9e-06 56.2 42 52.4
MBI03_g33023_MAGBIO Magnolia biondii HOM05D007294 ORTHO05D009040 6.5e-06 55.8 51 49.0
COL.COLO4_17874 Corchorus olitorius HOM05D007004 ORTHO05D009040 8.4e-06 55.5 55 54.5


User provided reference genes

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