Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C03p78130 Brassica napus HOM05D004921 ORTHO05D006008 0.0e+00 1290.4 697 100.0
BolC3t20076H Brassica oleracea HOM05D004921 ORTHO05D006008 0.0e+00 1111.7 630 97.3
BcaC01g00311 Brassica carinata HOM05D004921 ORTHO05D006008 0.0e+00 1097.4 630 96.2
A08p23440 Brassica napus HOM05D004921 ORTHO05D006008 1.9e-298 1028.9 658 89.7
BraA08t34298Z Brassica rapa HOM05D004921 ORTHO05D006008 7.6e-292 1006.9 635 90.7
BcaB03g12266 Brassica carinata HOM05D004921 ORTHO05D006008 3.3e-287 991.5 650 86.6
Sp7g36200 Schrenkiella parvula HOM05D004921 ORTHO05D006008 2.5e-255 885.6 662 77.8
AT4G39690 Arabidopsis thaliana HOM05D004921 ORTHO05D006008 1.8e-245 852.8 652 75.3
Thhalv10024641m.g Eutrema salsugineum HOM05D004921 ORTHO05D006008 1.6e-241 839.7 657 74.0
AL7G11890 Arabidopsis lyrata HOM05D004921 ORTHO05D006008 2.4e-237 825.9 659 73.0
Carub.0007s0157 Capsella rubella HOM05D004921 ORTHO05D006008 1.8e-232 809.7 655 71.8
CARHR247030 Cardamine hirsuta HOM05D004921 ORTHO05D006008 6.7e-224 781.2 651 70.0
Aa31LG6G15580 Aethionema arabicum HOM05D004921 ORTHO05D006008 4.0e-208 728.8 652 66.7
THA.LOC104807708 Tarenaya hassleriana HOM05D004921 ORTHO05D006008 1.7e-195 686.8 658 62.0
Atru.chr4.263 Acer truncatum HOM05D004921 ORTHO05D006008 2.4e-144 516.9 651 52.5
Thecc.01G107800 Theobroma cacao HOM05D004921 ORTHO05D006008 6.9e-144 515.4 687 52.5
Gohir.A11G198900 Gossypium hirsutum HOM05D004921 ORTHO05D006008 5.8e-143 512.3 658 51.1
Duzib147G0642 Durio zibethinus HOM05D004921 ORTHO05D006008 7.6e-143 511.9 650 52.6
Gohir.D11G225200 Gossypium hirsutum HOM05D004921 ORTHO05D006008 1.4e-141 507.7 691 50.1
Gorai.007G242500 Gossypium raimondii HOM05D004921 ORTHO05D006008 3.2e-141 506.5 687 50.8
Gohir.D12G094600 Gossypium hirsutum HOM05D004921 ORTHO05D006008 4.8e-137 492.7 647 50.1
Gorai.008G103200 Gossypium raimondii HOM05D004921 ORTHO05D006008 5.3e-136 489.2 647 50.2
COL.COLO4_11048 Corchorus olitorius HOM05D004921 ORTHO05D006008 9.0e-136 488.4 683 50.5
RcHm_v2.0_Chr2g0115541 Rosa chinensis HOM05D004921 ORTHO05D006008 1.2e-135 488.0 646 49.7
Eucgr.I00377 Eucalyptus grandis HOM05D004921 ORTHO05D006008 3.0e-131 473.4 662 48.5
Duzib187G0704 Durio zibethinus HOM05D004921 ORTHO05D006008 6.7e-131 472.2 722 47.0
Prupe.6G178900 Prunus persica HOM05D004921 ORTHO05D006008 3.3e-130 469.9 647 48.2
Manes.12G138700 Manihot esculenta HOM05D004921 ORTHO05D006008 6.3e-129 465.7 686 47.1
MD01G1023900 Malus domestica HOM05D004921 ORTHO05D006008 1.1e-128 464.9 579 51.8
TAR381G0204 Trochodendron aralioides HOM05D004921 ORTHO05D006008 1.4e-128 464.5 662 49.1
CiPaw.03G138100 Carya illinoinensis HOM05D004921 ORTHO05D006008 2.4e-128 463.8 456 60.7
CANSAT01G2911 Cannabis sativa HOM05D004921 ORTHO05D006008 4.5e-127 459.5 657 48.1
TAR381G1578 Trochodendron aralioides HOM05D004921 ORTHO05D006008 5.0e-126 456.1 655 48.9
TPR.G2186 Trifolium pratense HOM05D004921 ORTHO05D006008 2.1e-124 450.7 649 45.9
PGR004G1500 Punica granatum HOM05D004921 ORTHO05D006008 3.6e-124 449.9 657 48.1
Potri.005G080200 Populus trichocarpa HOM05D004921 ORTHO05D006008 1.4e-123 448.0 417 60.9
Potri.007G087100 Populus trichocarpa HOM05D004921 ORTHO05D006008 5.1e-123 446.0 479 55.1
Ciclev10025222m.g Citrus clementina HOM05D004921 ORTHO05D006008 2.0e-122 444.1 636 48.0
TWI53G0980 Tripterygium wilfordii HOM05D004921 ORTHO05D006008 2.6e-122 443.7 679 45.7
Sopen04g024290 Solanum pennellii HOM05D004921 ORTHO05D006008 3.3e-122 443.4 650 45.8
QL06p050536 Quercus lobata HOM05D004921 ORTHO05D006008 1.3e-121 441.4 648 46.0
Rhsim10G0156300 Rhododendron simsii HOM05D004921 ORTHO05D006008 1.7e-121 441.0 667 46.5
MSTRG.2547 Avicennia marina HOM05D004921 ORTHO05D006008 2.4e-120 437.2 657 45.8
Nn5g28998 Nelumbo nucifera HOM05D004921 ORTHO05D006008 5.9e-119 432.6 622 46.5
Actinidia36610 Actinidia chinensis HOM05D004921 ORTHO05D006008 7.7e-119 432.2 669 46.0
Sed0006076 Sechium edule HOM05D004921 ORTHO05D006008 5.5e-117 426.0 683 45.2
PSO133G0077 Papaver somniferum HOM05D004921 ORTHO05D006008 9.4e-117 425.2 611 46.3
SGA_v2.0_scaffold51G18730 Striga asiatica HOM05D004921 ORTHO05D006008 1.2e-116 424.9 656 44.7
Migut.H02393 Erythranthe guttata HOM05D004921 ORTHO05D006008 4.7e-116 422.9 676 43.6
Lalb_Chr13g0296081 Lupinus albus HOM05D004921 ORTHO05D006008 3.9e-115 419.9 652 45.6
MSTRG.23325 Avicennia marina HOM05D004921 ORTHO05D006008 8.8e-115 418.7 392 61.0
Gohir.A12G091122 Gossypium hirsutum HOM05D004921 ORTHO05D006008 8.8e-115 418.7 676 44.2
Dinv21950 Davidia involucrata HOM05D004921 ORTHO05D006008 1.5e-114 417.9 338 67.2
Lj4g0017071 Lotus japonicus HOM05D004921 ORTHO05D006008 2.0e-114 417.5 723 42.3
arahy.Tifrunner.gnm1.ann1.WRB6NJ Arachis hypogaea HOM05D004921 ORTHO05D006008 3.3e-114 416.8 661 44.6
Glyma.05G181700 Glycine max HOM05D004921 ORTHO05D006008 4.4e-114 416.4 643 45.4
HanXRQChr02g0041141 Helianthus annuus HOM05D004921 ORTHO05D006008 4.4e-114 416.4 618 46.9
Nitab4.5_0001095g0090 Nicotiana tabacum HOM05D004921 ORTHO05D006008 1.7e-113 414.5 646 44.0
Aqoxy6G00539 Aquilegia oxysepala HOM05D004921 ORTHO05D006008 2.2e-113 414.1 631 46.1
Psat7g053360 Pisum sativum HOM05D004921 ORTHO05D006008 3.7e-113 413.3 667 44.1
GSVIVG01022188001 Vitis vinifera HOM05D004921 ORTHO05D006008 3.7e-113 413.3 685 44.1
MELO3C007782.2 Cucumis melo HOM05D004921 ORTHO05D006008 8.2e-113 412.1 620 47.3
PSO541G2636 Papaver somniferum HOM05D004921 ORTHO05D006008 4.1e-112 409.8 633 45.3
Hma1.2p1_0070F.1_g037680 Hydrangea macrophylla HOM05D004921 ORTHO05D006008 1.3e-110 404.8 338 66.3
Sabra05G0065800 Salix brachista HOM05D004921 ORTHO05D006008 2.9e-110 403.7 543 47.9
Lalb_Chr07g0184941 Lupinus albus HOM05D004921 ORTHO05D006008 8.5e-110 402.1 653 44.9
Haze_24997 Corylus avellana HOM05D004921 ORTHO05D006008 1.5e-109 401.4 659 43.7
CsaV3_6G045720 Cucumis sativus L. HOM05D004921 ORTHO05D006008 1.5e-109 401.4 625 45.8
arahy.Tifrunner.gnm1.ann1.P05418 Arachis hypogaea HOM05D004921 ORTHO05D006008 1.9e-109 401.0 606 45.5
Medtr8g091480 Medicago truncatula HOM05D004921 ORTHO05D006008 2.5e-109 400.6 657 44.0
Lsat_1_v5_gn_5_40701 Lactuca sativa HOM05D004921 ORTHO05D006008 4.2e-109 399.8 594 47.0
Glyma.08G139400 Glycine max HOM05D004921 ORTHO05D006008 7.2e-109 399.1 657 44.1
VMungo0251G2130 Vigna mungo HOM05D004921 ORTHO05D006008 8.0e-108 395.6 661 43.6
Phvul.002G262700 Phaseolus vulgaris HOM05D004921 ORTHO05D006008 1.0e-107 395.2 665 43.3
Sc03g0002320 Simmondsia chinensis HOM05D004921 ORTHO05D006008 1.8e-107 394.4 657 44.4
AUR62003756 Chenopodium quinoa HOM05D004921 ORTHO05D006008 3.7e-105 386.7 666 41.4
FAN19G2080 Fragaria x ananassa HOM05D004921 ORTHO05D006008 1.8e-104 384.4 664 43.2
ECA246G4277 Erigeron canadensis HOM05D004921 ORTHO05D006008 3.1e-104 383.6 621 44.4
Hund13647 Selenicereus undatus HOM05D004921 ORTHO05D006008 4.1e-104 383.3 675 41.9
ClCG01G019030 Citrullus lanatus HOM05D004921 ORTHO05D006008 9.1e-104 382.1 618 45.0
ATR0661G561 Amborella trichopoda HOM05D004921 ORTHO05D006008 1.2e-103 381.7 616 44.2
EL10Ac6g15063 Beta vulgaris HOM05D004921 ORTHO05D006008 1.2e-103 381.7 656 42.7
FvH4_1g21670 Fragaria vesca HOM05D004921 ORTHO05D006008 5.9e-103 379.4 576 45.8
MD15G1329400 Malus domestica HOM05D004921 ORTHO05D006008 7.7e-103 379.0 381 59.1
AUR62002041 Chenopodium quinoa HOM05D004921 ORTHO05D006008 8.5e-102 375.6 623 43.0
FAN26G3332 Fragaria x ananassa HOM05D004921 ORTHO05D006008 9.4e-101 372.1 586 44.7
FAN26G3387 Fragaria x ananassa HOM05D004921 ORTHO05D006008 9.4e-101 372.1 586 44.7
FAN28G0310 Fragaria x ananassa HOM05D004921 ORTHO05D006008 9.4e-101 372.1 657 42.8
FAN23G2445 Fragaria x ananassa HOM05D004921 ORTHO05D006008 8.8e-99 365.5 602 43.9
Lj4A880G51 Lonicera japonica HOM05D004921 ORTHO05D006008 3.4e-98 363.6 624 43.1
Peaxi162Scf00204g00620 Petunia axillaris HOM05D004921 ORTHO05D006008 1.6e-95 354.8 665 40.5
CDE04G0927 Ceratophyllum demersum HOM05D004921 ORTHO05D006008 2.0e-95 354.4 551 46.8
HPP92_027138 Vanilla planifolia HOM05D004921 ORTHO05D006008 4.5e-95 353.2 355 58.0
HPP92_016473 Vanilla planifolia HOM05D004921 ORTHO05D006008 2.9e-94 350.5 410 52.7
Ah.03g142660 Amaranthus hybridus HOM05D004921 ORTHO05D006008 1.5e-93 348.2 600 42.3
vmacro12934 Vaccinium macrocarpon HOM05D004921 ORTHO05D006008 2.3e-91 340.9 592 42.6
MBI05_g00773_MAGBIO Magnolia biondii HOM05D004921 ORTHO05D006008 1.5e-90 338.2 646 41.0
CDE06G0766 Ceratophyllum demersum HOM05D004921 ORTHO05D006008 2.0e-87 327.8 575 42.4
SEGI_07937 Sequoiadendron giganteum HOM05D004921 ORTHO05D006008 4.5e-87 326.6 432 47.9
Zm00001eb431730 Zea mays HOM05D004921 ORTHO05D006008 4.9e-81 306.6 639 37.9
DCAR_001020 Daucus carota HOM05D004921 ORTHO05D006008 3.5e-79 300.4 614 38.8
Cc07_g15680 Coffea canephora HOM05D004921 ORTHO05D006008 1.2e-74 285.4 542 40.4
unitig_0.g2479 Utricularia gibba HOM05D004921 ORTHO05D006008 1.9e-72 278.1 620 36.3
A01p00580 Brassica napus HOM05D004921 ORTHO05D006008 1.9e-69 268.1 271 61.6
AagrBONN_evm.TU.Sc2ySwM_344.1023 Anthoceros agrestis HOM05D004921 ORTHO05D006008 1.8e-59 235.0 315 44.1
BcaNung05547 Brassica carinata HOM05D004921 ORTHO05D006008 1.3e-57 228.8 225 63.1
SEGI_00052 Sequoiadendron giganteum HOM05D004921 ORTHO05D006008 3.0e-54 217.6 326 45.7
Sabra07G0072000 Salix brachista HOM05D004921 ORTHO05D006008 2.1e-52 211.5 370 40.8
MBI05_g36740_MAGBIO Magnolia biondii HOM05D004921 ORTHO05D006008 5.2e-51 206.8 217 55.8
Pp3c3_27510 Physcomitrium patens HOM05D004921 ORTHO05D006008 1.5e-50 205.3 360 39.2
Mapoly0001s0396 Marchantia polymorpha HOM05D004921 ORTHO05D006008 4.4e-50 203.8 317 40.4
BraA01t00066Z Brassica rapa HOM05D004921 ORTHO05D006008 6.4e-49 199.9 193 60.1
SMO174G0199 Selaginella moellendorffii HOM05D004921 ORTHO05D006008 1.3e-46 192.2 620 29.5
CBR_g51480 Chara braunii HOM05D004921 ORTHO05D006008 1.5e-45 188.7 329 35.9
BolC1t00074H Brassica oleracea HOM05D004921 ORTHO05D006008 4.0e-43 180.6 111 84.7
Nitab4.5_0000518g0040 Nicotiana tabacum HOM05D004921 ORTHO05D006008 6.9e-43 179.9 450 36.4
Dinv16320 Davidia involucrata HOM05D004921 ORTHO05D006008 4.5e-42 177.2 124 70.2
C01p00710 Brassica napus HOM05D004921 ORTHO05D006008 9.9e-42 176.0 112 83.9
Cpa.g.sc82.58 Carica papaya HOM05D004921 ORTHO05D006008 9.6e-37 159.5 113 74.3
Nitab4.5_0000518g0050 Nicotiana tabacum HOM05D004921 ORTHO05D006008 1.4e-35 155.6 112 69.6
Cc07_g15670 Coffea canephora HOM05D004921 ORTHO05D006008 9.0e-35 152.9 118 65.3
CAN.G727.1 Capsicum annuum HOM05D004921 ORTHO05D006008 5.8e-34 150.2 118 63.6
BcaNung00891 Brassica carinata HOM05D004921 ORTHO05D006008 6.4e-33 146.7 90 83.3
Hma1.2p1_0070F.1_g037670 Hydrangea macrophylla HOM05D004921 ORTHO05D006008 3.3e-29 134.4 397 32.2
Cpa.g.sc82.56 Carica papaya HOM05D004921 ORTHO05D006008 2.6e-26 124.8 88 72.7
Zm00001eb069160 Zea mays HOM05D004921 ORTHO05D006008 1.0e-25 122.9 450 32.0
SMO197G0017 Selaginella moellendorffii HOM05D004921 ORTHO05D006008 9.3e-24 116.3 215 36.7
SEGI_21175 Sequoiadendron giganteum HOM05D004921 ORTHO05D006008 4.6e-23 114.0 107 54.2
MCO12G391 Micromonas commoda HOM05D004921 ORTHO05D006008 3.9e-22 110.9 518 26.8
Cpa.g.sc82.54 Carica papaya HOM05D004921 ORTHO05D006008 5.1e-22 110.5 87 66.7
Dinv04895 Davidia involucrata HOM05D004921 ORTHO05D006008 1.1e-21 109.4 141 46.8
Nn5g31279 Nelumbo nucifera HOM05D004921 ORTHO05D006008 1.5e-21 109.0 93 64.5
Dinv40591 Davidia involucrata HOM05D004921 ORTHO05D006008 1.1e-19 102.8 140 45.7
Dinv32118 Davidia involucrata HOM05D004921 ORTHO05D006008 1.4e-19 102.4 141 45.4
BraA01t00065Z Brassica rapa HOM05D004921 ORTHO05D006008 5.7e-13 80.5 60 81.7
CSS0005403 Camellia sinensis var. sinensis HOM05D004921 ORTHO05D006008 6.9e-11 73.6 317 29.3


User provided reference genes

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