Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C03p77150 Brassica napus HOM05D003994 ORTHO05D004957 5.0e-111 404.4 204 100.0
A08p24160 Brassica napus HOM05D003994 ORTHO05D004957 2.3e-108 395.6 204 97.1
BcaC01g00237 Brassica carinata HOM05D003994 ORTHO05D004957 6.8e-108 394.0 204 96.6
BraA08t34371Z Brassica rapa HOM05D003994 ORTHO05D004957 1.2e-107 393.3 204 96.6
CARHR294300 Cardamine hirsuta HOM05D003994 ORTHO05D004957 3.7e-106 388.3 204 95.1
Sp7g37200 Schrenkiella parvula HOM05D003994 ORTHO05D004957 9.2e-105 383.6 204 94.1
Thhalv10026160m.g Eutrema salsugineum HOM05D003994 ORTHO05D004957 3.0e-103 378.6 204 92.6
Aa31LG6G16590 Aethionema arabicum HOM05D003994 ORTHO05D004957 8.6e-103 377.1 204 92.6
AT4G38570 Arabidopsis thaliana HOM05D003994 ORTHO05D004957 1.5e-102 376.3 202 93.6
THA.LOC104824762 Tarenaya hassleriana HOM05D003994 ORTHO05D004957 1.8e-100 369.4 204 89.2
Thhalv10019092m.g Eutrema salsugineum HOM05D003994 ORTHO05D004957 5.8e-99 364.4 204 88.2
A07p32200 Brassica napus HOM05D003994 ORTHO05D004957 1.3e-98 363.2 205 88.3
C02p23750 Brassica napus HOM05D003994 ORTHO05D004957 2.9e-98 362.1 202 88.1
BolC2t08504H Brassica oleracea HOM05D003994 ORTHO05D004957 2.9e-98 362.1 202 88.1
BcaB03g15140 Brassica carinata HOM05D003994 ORTHO05D004957 4.9e-98 361.3 202 86.6
C06p37970 Brassica napus HOM05D003994 ORTHO05D004957 6.4e-98 360.9 205 88.3
BcaB03g15393 Brassica carinata HOM05D003994 ORTHO05D004957 8.3e-98 360.5 202 87.6
BcaC03g14900 Brassica carinata HOM05D003994 ORTHO05D004957 1.1e-97 360.1 202 87.6
BcaC08g46004 Brassica carinata HOM05D003994 ORTHO05D004957 2.4e-97 359.0 205 87.8
BolC6t38896H Brassica oleracea HOM05D003994 ORTHO05D004957 3.2e-97 358.6 205 87.8
BcaB05g24329 Brassica carinata HOM05D003994 ORTHO05D004957 4.1e-97 358.2 202 86.6
AL2G26920 Arabidopsis lyrata HOM05D003994 ORTHO05D004957 5.4e-97 357.8 204 87.3
Carub.0002s1448 Capsella rubella HOM05D003994 ORTHO05D004957 5.4e-97 357.8 204 87.3
CARHR060640 Cardamine hirsuta HOM05D003994 ORTHO05D004957 9.2e-97 357.1 202 87.1
A02p14650 Brassica napus HOM05D003994 ORTHO05D004957 1.6e-96 356.3 203 87.7
BraA02t06532Z Brassica rapa HOM05D003994 ORTHO05D004957 1.6e-96 356.3 203 87.7
AT1G68000 Arabidopsis thaliana HOM05D003994 ORTHO05D004957 2.0e-96 355.9 204 87.3
Sp5g23020 Schrenkiella parvula HOM05D003994 ORTHO05D004957 3.5e-96 355.1 204 84.8
A07p34510 Brassica napus HOM05D003994 ORTHO05D004957 1.0e-95 353.6 203 85.7
Carub.0007s0044 Capsella rubella HOM05D003994 ORTHO05D004957 8.6e-95 350.5 202 88.1
CANSAT56G2628 Cannabis sativa HOM05D003994 ORTHO05D004957 5.8e-91 337.8 204 78.9
Cfa005247 Carpinus fangiana HOM05D003994 ORTHO05D004957 9.8e-91 337.0 204 79.4
Haze_02136 Corylus avellana HOM05D003994 ORTHO05D004957 9.8e-91 337.0 204 79.9
Duzib248G0985 Durio zibethinus HOM05D003994 ORTHO05D004957 2.2e-90 335.9 204 79.4
CANSAT25G2109 Cannabis sativa HOM05D003994 ORTHO05D004957 4.9e-90 334.7 204 77.5
Thecc.02G059800 Theobroma cacao HOM05D003994 ORTHO05D004957 1.9e-89 332.8 204 79.9
Duzib052G1000 Durio zibethinus HOM05D003994 ORTHO05D004957 1.2e-88 330.1 204 78.4
Gorai.002G198300 Gossypium raimondii HOM05D003994 ORTHO05D004957 1.2e-88 330.1 202 79.7
Gohir.A01G168900 Gossypium hirsutum HOM05D003994 ORTHO05D004957 1.6e-88 329.7 202 79.2
CiPaw.05G082400 Carya illinoinensis HOM05D003994 ORTHO05D004957 3.5e-88 328.6 204 77.0
Atru.chr5.3321 Acer truncatum HOM05D003994 ORTHO05D004957 7.8e-88 327.4 202 79.2
COL.COLO4_17341 Corchorus olitorius HOM05D003994 ORTHO05D004957 7.8e-88 327.4 202 79.7
Manes.04G058800 Manihot esculenta HOM05D003994 ORTHO05D004957 1.7e-87 326.2 201 78.1
Glyma.11G091200 Glycine max HOM05D003994 ORTHO05D004957 2.3e-87 325.9 202 77.2
Gohir.D01G159750 Gossypium hirsutum HOM05D003994 ORTHO05D004957 2.3e-87 325.9 202 79.2
Glyma.12G033500 Glycine max HOM05D003994 ORTHO05D004957 3.0e-87 325.5 202 77.2
MD05G1122300 Malus domestica HOM05D003994 ORTHO05D004957 3.0e-87 325.5 204 75.5
PGR042G1915 Punica granatum HOM05D003994 ORTHO05D004957 3.9e-87 325.1 200 77.5
Potri.004G175600 Populus trichocarpa HOM05D003994 ORTHO05D004957 5.1e-87 324.7 203 76.4
FAN20G1157 Fragaria x ananassa HOM05D003994 ORTHO05D004957 1.1e-86 323.6 201 75.6
FvH4_2g13710 Fragaria vesca HOM05D003994 ORTHO05D004957 1.5e-86 323.2 201 75.6
Phvul.011G036100 Phaseolus vulgaris HOM05D003994 ORTHO05D004957 1.9e-86 322.8 202 75.7
Lalb_Chr03g0025191 Lupinus albus HOM05D003994 ORTHO05D004957 2.5e-86 322.4 202 77.2
RcHm_v2.0_Chr7g0224781 Rosa chinensis HOM05D003994 ORTHO05D004957 2.5e-86 322.4 204 75.0
FvH4_2g14000 Fragaria vesca HOM05D003994 ORTHO05D004957 3.3e-86 322.0 201 75.1
Prupe.7G263800 Prunus persica HOM05D003994 ORTHO05D004957 4.3e-86 321.6 204 75.0
Lalb_Chr01g0001921 Lupinus albus HOM05D003994 ORTHO05D004957 5.6e-86 321.2 202 76.2
TWI79G1032 Tripterygium wilfordii HOM05D003994 ORTHO05D004957 5.6e-86 321.2 202 77.2
VMungo1127G1708 Vigna mungo HOM05D003994 ORTHO05D004957 7.3e-86 320.9 202 74.3
FAN27G1606 Fragaria x ananassa HOM05D003994 ORTHO05D004957 1.6e-85 319.7 201 74.6
BolC3t19967H Brassica oleracea HOM05D003994 ORTHO05D004957 3.6e-85 318.5 206 82.5
Lalb_Chr19g0139051 Lupinus albus HOM05D003994 ORTHO05D004957 4.7e-85 318.2 202 75.7
CAN.G940.12 Capsicum annuum HOM05D003994 ORTHO05D004957 6.2e-85 317.8 200 77.5
vmacro17345 Vaccinium macrocarpon HOM05D003994 ORTHO05D004957 1.1e-84 317.0 202 76.2
Nitab4.5_0001583g0200 Nicotiana tabacum HOM05D003994 ORTHO05D004957 1.8e-84 316.2 200 77.5
CsaV3_2G016120 Cucumis sativus L. HOM05D003994 ORTHO05D004957 3.1e-84 315.5 204 75.0
Medtr4g073020 Medicago truncatula HOM05D003994 ORTHO05D004957 6.8e-84 314.3 202 72.8
Nitab4.5_0001225g0220 Nicotiana tabacum HOM05D003994 ORTHO05D004957 6.8e-84 314.3 200 77.0
TPR.G39214 Trifolium pratense HOM05D003994 ORTHO05D004957 6.8e-84 314.3 202 73.3
CiPaw.06G111900 Carya illinoinensis HOM05D003994 ORTHO05D004957 1.2e-83 313.5 204 74.0
TPR.G38794 Trifolium pratense HOM05D003994 ORTHO05D004957 1.2e-83 313.5 202 72.8
Rhsim12G0069500 Rhododendron simsii HOM05D003994 ORTHO05D004957 1.5e-83 313.2 201 75.6
PGSC0003DMG401014852 Solanum tuberosum HOM05D003994 ORTHO05D004957 1.5e-83 313.2 200 77.0
CSS0048612 Camellia sinensis var. sinensis HOM05D003994 ORTHO05D004957 2.0e-83 312.8 204 75.5
Solyc08g005985.1 Solanum lycopersicum HOM05D003994 ORTHO05D004957 2.0e-83 312.8 200 77.0
Sopen08g001960 Solanum pennellii HOM05D003994 ORTHO05D004957 2.0e-83 312.8 200 77.0
CSS0002177 Camellia sinensis var. sinensis HOM05D003994 ORTHO05D004957 3.4e-83 312.0 204 75.0
Eucgr.I01421 Eucalyptus grandis HOM05D003994 ORTHO05D004957 3.4e-83 312.0 200 76.5
Lj3g0010701 Lotus japonicus HOM05D003994 ORTHO05D004957 3.4e-83 312.0 200 74.0
Hma1.2p1_0163F.1_g072490 Hydrangea macrophylla HOM05D003994 ORTHO05D004957 5.8e-83 311.2 202 75.2
Potri.009G135500 Populus trichocarpa HOM05D003994 ORTHO05D004957 5.8e-83 311.2 204 73.5
GSVIVG01024019001 Vitis vinifera HOM05D003994 ORTHO05D004957 5.8e-83 311.2 204 75.0
Sed0013006 Sechium edule HOM05D003994 ORTHO05D004957 7.6e-83 310.8 204 72.5
Sed0021478 Sechium edule HOM05D003994 ORTHO05D004957 1.7e-82 309.7 204 73.0
Ca_19074_v3 Cicer arietinum L. HOM05D003994 ORTHO05D004957 4.9e-82 308.1 202 71.8
Dinv41938 Davidia involucrata HOM05D003994 ORTHO05D004957 8.4e-82 307.4 204 73.5
ECA234G2975 Erigeron canadensis HOM05D003994 ORTHO05D004957 8.4e-82 307.4 201 74.1
Nn3g20343 Nelumbo nucifera HOM05D003994 ORTHO05D004957 1.4e-81 306.6 204 73.0
HanXRQChr16g0514761 Helianthus annuus HOM05D003994 ORTHO05D004957 1.9e-81 306.2 201 74.1
MSTRG.27636 Avicennia marina HOM05D003994 ORTHO05D004957 2.4e-81 305.8 200 74.5
Migut.N01321 Erythranthe guttata HOM05D003994 ORTHO05D004957 4.1e-81 305.1 199 74.4
Lsat_1_v5_gn_8_167161 Lactuca sativa HOM05D003994 ORTHO05D004957 4.1e-81 305.1 201 74.1
Actinidia00624 Actinidia chinensis HOM05D003994 ORTHO05D004957 7.1e-81 304.3 218 69.7
SGA_v2.0_scaffold16G07672 Striga asiatica HOM05D003994 ORTHO05D004957 7.1e-81 304.3 199 73.9
MELO3C020821.2 Cucumis melo HOM05D003994 ORTHO05D004957 9.2e-81 303.9 225 67.6
HanXRQChr10g0295951 Helianthus annuus HOM05D003994 ORTHO05D004957 9.2e-81 303.9 200 73.5
Rhsim05G0056700 Rhododendron simsii HOM05D003994 ORTHO05D004957 1.2e-80 303.5 202 73.8
SGA_v2.0_scaffold3G01602 Striga asiatica HOM05D003994 ORTHO05D004957 1.6e-80 303.1 199 72.9
Ah.01g023020 Amaranthus hybridus HOM05D003994 ORTHO05D004957 2.7e-80 302.4 208 71.6
DCAR_025322 Daucus carota HOM05D003994 ORTHO05D004957 4.6e-80 301.6 202 73.3
C03p25490 Brassica napus HOM05D003994 ORTHO05D004957 7.8e-80 300.8 159 95.6
Hund16215 Selenicereus undatus HOM05D003994 ORTHO05D004957 7.8e-80 300.8 200 72.5
Sc08g0002910 Simmondsia chinensis HOM05D003994 ORTHO05D004957 7.8e-80 300.8 202 71.3
Aqoxy1G00146 Aquilegia oxysepala HOM05D003994 ORTHO05D004957 2.3e-79 299.3 204 71.6
Aqoxy4G01712 Aquilegia oxysepala HOM05D003994 ORTHO05D004957 6.6e-79 297.7 204 71.1
TAR376G0382 Trochodendron aralioides HOM05D003994 ORTHO05D004957 1.5e-78 296.6 204 70.1
TAR629G0599 Trochodendron aralioides HOM05D003994 ORTHO05D004957 1.5e-78 296.6 204 70.6
QL11p050712 Quercus lobata HOM05D003994 ORTHO05D004957 1.9e-78 296.2 203 70.9
MD10G1124800 Malus domestica HOM05D003994 ORTHO05D004957 2.5e-78 295.8 191 73.3
SalBow3G1772 Salvia bowleyana HOM05D003994 ORTHO05D004957 3.3e-78 295.4 200 71.5
PSO017G2109 Papaver somniferum HOM05D003994 ORTHO05D004957 8.1e-77 290.8 202 69.8
PSO675G5603 Papaver somniferum HOM05D003994 ORTHO05D004957 8.1e-77 290.8 202 69.8
Sabra04G0117500 Salix brachista HOM05D003994 ORTHO05D004957 8.1e-77 290.8 203 69.5
Cc09_g07710 Coffea canephora HOM05D003994 ORTHO05D004957 1.1e-76 290.4 200 71.0
FAN24G3352 Fragaria x ananassa HOM05D003994 ORTHO05D004957 1.8e-76 289.7 201 69.2
FAN15G2236 Fragaria x ananassa HOM05D003994 ORTHO05D004957 2.4e-76 289.3 201 69.2
AUR62037910 Chenopodium quinoa HOM05D003994 ORTHO05D004957 5.2e-76 288.1 191 73.8
Psat7g138440 Pisum sativum HOM05D003994 ORTHO05D004957 4.9e-74 281.6 186 70.4
EL10Ac9g21377 Beta vulgaris HOM05D003994 ORTHO05D004957 8.4e-74 280.8 184 74.5
arahy.Tifrunner.gnm1.ann1.U045QQ Arachis hypogaea HOM05D003994 ORTHO05D004957 1.1e-73 280.4 175 77.7
unitig_749.g13986 Utricularia gibba HOM05D003994 ORTHO05D004957 1.9e-73 279.6 199 67.8
FAN24G0721 Fragaria x ananassa HOM05D003994 ORTHO05D004957 2.4e-73 279.3 237 59.9
Oeu005708.1 Olea europaea HOM05D003994 ORTHO05D004957 3.2e-73 278.9 187 72.7
Oeu061402.1 Olea europaea HOM05D003994 ORTHO05D004957 5.4e-73 278.1 185 74.1
PGR142G1861 Punica granatum HOM05D003994 ORTHO05D004957 1.2e-72 276.9 200 69.5
ClCG02G011950 Citrullus lanatus HOM05D003994 ORTHO05D004957 2.7e-72 275.8 206 68.0
Lsat_1_v5_gn_5_108021 Lactuca sativa HOM05D003994 ORTHO05D004957 6.0e-72 274.6 184 72.8
AUR62040162 Chenopodium quinoa HOM05D003994 ORTHO05D004957 1.0e-71 273.9 202 67.3
Sabra09G0105200 Salix brachista HOM05D003994 ORTHO05D004957 1.9e-70 269.6 225 60.9
HPP92_004513 Vanilla planifolia HOM05D003994 ORTHO05D004957 5.6e-70 268.1 186 71.0
Zm00001eb274200 Zea mays HOM05D003994 ORTHO05D004957 4.0e-68 261.9 199 66.3
Os02g0123600 Oryza sativa ssp. japonica HOM05D003994 ORTHO05D004957 6.9e-68 261.2 199 64.3
ATR0307G066 Amborella trichopoda HOM05D003994 ORTHO05D004957 9.0e-68 260.8 204 65.2
CDE05G3005 Ceratophyllum demersum HOM05D003994 ORTHO05D004957 2.4e-65 252.7 199 66.8
Lj5C178T13 Lonicera japonica HOM05D003994 ORTHO05D004957 2.1e-64 249.6 160 77.5
arahy.Tifrunner.gnm1.ann1.VZUK08 Arachis hypogaea HOM05D003994 ORTHO05D004957 4.6e-64 248.4 186 68.3
arahy.Tifrunner.gnm1.ann1.L07Y4L Arachis hypogaea HOM05D003994 ORTHO05D004957 6.0e-64 248.1 159 75.5
Dinv43046 Davidia involucrata HOM05D003225 ORTHO05D003818 1.0e-63 247.3 179 68.2
BolC6t39228H Brassica oleracea HOM05D000212 ORTHO05D005509 2.3e-63 246.1 152 84.9
MBI02_g21865_MAGBIO Magnolia biondii HOM05D003994 ORTHO05D004957 1.9e-62 243.0 204 62.7
SGA_v2.0_scaffold243G44305 Striga asiatica HOM05D003994 ORTHO05D004957 1.9e-62 243.0 197 62.9
SalBow3G2361 Salvia bowleyana HOM05D003994 ORTHO05D004957 2.5e-62 242.7 228 57.5
Cpa.g.sc37.130 Carica papaya HOM05D003994 ORTHO05D004957 9.6e-62 240.7 152 77.6
EL10Ac7g18178 Beta vulgaris HOM05D003994 ORTHO05D004957 3.6e-61 238.8 204 61.3
Mapoly0071s0023 Marchantia polymorpha HOM05D003994 ORTHO05D004957 4.2e-57 225.3 202 59.9
SHI32381 Sapria himalayana HOM05D003994 ORTHO05D004957 1.2e-56 223.8 200 57.5
SalBow5G5214 Salvia bowleyana HOM05D003994 ORTHO05D004957 6.0e-56 221.5 185 63.2
Peaxi162Scf00045g00144 Petunia axillaris HOM05D003994 ORTHO05D004957 3.9e-55 218.8 200 57.5
CDE05G1389 Ceratophyllum demersum HOM05D003994 ORTHO05D004957 6.2e-53 211.5 199 58.8
FAN15G2231 Fragaria x ananassa HOM05D003994 ORTHO05D004957 1.4e-52 210.3 158 65.8
Pp3c4_10100 Physcomitrium patens HOM05D003994 ORTHO05D004957 6.9e-52 208.0 197 56.9
SMO112G0024 Selaginella moellendorffii HOM05D003994 ORTHO05D004957 9.0e-52 207.6 199 56.8
Zm00001eb389940 Zea mays HOM05D003994 ORTHO05D004957 1.0e-50 204.1 198 55.1
Pp3c3_18340 Physcomitrium patens HOM05D003994 ORTHO05D004957 1.4e-49 200.3 197 53.8
AL7G10460 Arabidopsis lyrata HOM05D003994 ORTHO05D004957 3.0e-47 192.6 105 89.5
CBR_g32608 Chara braunii HOM05D003994 ORTHO05D004957 2.8e-45 186.0 197 50.3
C06p42000 Brassica napus HOM05D000573 ORTHO05D005509 5.3e-44 181.8 180 61.7
BcaC08g46226 Brassica carinata HOM05D003994 ORTHO05D004957 4.6e-40 168.7 100 87.0
arahy.Tifrunner.gnm1.ann1.NCR277 Arachis hypogaea HOM05D003994 ORTHO05D004957 6.1e-40 168.3 111 72.1
Cre10.g419800 Chlamydomonas reinhardtii HOM05D003994 ORTHO05D004957 4.8e-37 158.7 224 43.8
arahy.Tifrunner.gnm1.ann1.8L0F4Y Arachis hypogaea HOM05D003994 ORTHO05D004957 1.0e-34 151.0 96 76.0
PRCOL_00004558 Prasinoderma coloniale HOM05D003994 ORTHO05D004957 1.5e-30 137.1 142 52.1
MCO09G063 Micromonas commoda HOM05D003994 ORTHO05D004957 6.3e-29 131.7 225 38.7
FAN27G1783 Fragaria x ananassa HOM05D003994 ORTHO05D004957 1.8e-28 130.2 123 57.7
BcaNung05108 Brassica carinata HOM05D003994 ORTHO05D004957 6.9e-28 128.3 95 77.9
MBI11_g13142_MAGBIO Magnolia biondii HOM05D003994 ORTHO05D004957 5.0e-26 122.1 208 38.5
RcHm_v2.0_Chr5g0023251 Rosa chinensis HOM05D003994 ORTHO05D004957 5.5e-25 118.6 78 73.1
Cfa022653 Carpinus fangiana HOM05D003994 ORTHO05D004957 1.3e-21 107.5 125 48.0
Pp3c10_9870 Physcomitrium patens HOM05D003994 ORTHO05D310819 6.1e-16 88.6 205 31.2
MBI11_g33763_MAGBIO Magnolia biondii HOM05D003994 ORTHO05D004957 1.0e-15 87.8 73 57.5
THA.LOC104807810 Tarenaya hassleriana HOM05D003994 ORTHO05D004957 2.2e-13 80.1 105 44.8
MD08G1201300 Malus domestica HOM05D003994 ORTHO05D036609 8.2e-13 78.2 53 67.9
MD16G1270800 Malus domestica HOM05D003994 ORTHO05D036609 5.3e-12 75.5 53 67.9
arahy.Tifrunner.gnm1.ann1.B18QXV Arachis hypogaea HOM05D003994 ORTHO05D086742 1.2e-06 57.8 66 51.5
Os06g0492000 Oryza sativa ssp. japonica HOM05D003994 ORTHO05D036609 3.4e-06 56.2 37 62.2


User provided reference genes

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