Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C03p76940 Brassica napus HOM05D010750 ORTHO05D005686 0.0e+00 1271.1 656 100.0
BolC3t19949H Brassica oleracea HOM05D010750 ORTHO05D005686 0.0e+00 1240.7 658 98.0
BcaC01g00210 Brassica carinata HOM05D010750 ORTHO05D005686 0.0e+00 1140.6 664 90.7
BraA08t34382Z Brassica rapa HOM05D010750 ORTHO05D005686 0.0e+00 1075.8 665 88.4
A08p24270 Brassica napus HOM05D010750 ORTHO05D005686 5.6e-305 1050.4 689 84.8
BcaNung05575 Brassica carinata HOM05D010750 ORTHO05D005686 3.7e-256 888.3 845 64.0
Sp7g12060 Schrenkiella parvula HOM05D010750 ORTHO05D005686 5.4e-199 698.4 785 59.4
C04p41620 Brassica napus HOM05D010750 ORTHO05D005686 1.0e-189 667.5 752 60.2
BcaC02g09348 Brassica carinata HOM05D010750 ORTHO05D005686 5.6e-188 661.8 768 59.1
A04p07940 Brassica napus HOM05D010750 ORTHO05D005686 1.1e-175 620.9 761 56.6
BolC4t25741H Brassica oleracea HOM05D010750 ORTHO05D005686 1.1e-175 620.9 778 56.7
BraA04t16484Z Brassica rapa HOM05D010750 ORTHO05D005686 6.0e-174 615.1 765 56.3
CARHR220270 Cardamine hirsuta HOM05D010750 ORTHO05D005686 2.0e-169 600.1 796 52.9
AT4G14200 Arabidopsis thaliana HOM05D010750 ORTHO05D005686 7.1e-167 591.7 809 51.9
Thhalv10024466m.g Eutrema salsugineum HOM05D010750 ORTHO05D005686 3.9e-165 585.9 813 52.8
Carub.0007s2819 Capsella rubella HOM05D010750 ORTHO05D005686 6.1e-158 562.0 815 50.2
AL7G42170 Arabidopsis lyrata HOM05D010750 ORTHO05D005686 1.2e-145 521.2 746 51.5
Aa31LG9G3190 Aethionema arabicum HOM05D010750 ORTHO05D005686 6.1e-110 402.5 788 43.0
THA.LOC104808672 Tarenaya hassleriana HOM05D010750 ORTHO05D005686 5.1e-64 250.0 819 33.5
Migut.G00951 Erythranthe guttata HOM05D005839 ORTHO05D005686 3.0e-24 117.9 698 25.8
Cc03_g09160 Coffea canephora HOM05D005839 ORTHO05D005686 1.7e-19 102.1 234 29.9
QL06p027171 Quercus lobata HOM05D005839 ORTHO05D005686 2.9e-19 101.3 371 29.1
arahy.Tifrunner.gnm1.ann1.3YD71H Arachis hypogaea HOM05D005839 ORTHO05D005686 1.1e-18 99.4 392 28.8
Sabra14G0109900 Salix brachista HOM05D005839 ORTHO05D005686 3.2e-18 97.8 135 43.7
GSVIVG01031570001 Vitis vinifera HOM05D005839 ORTHO05D005686 4.2e-18 97.4 159 39.6
Ciclev10004236m.g Citrus clementina HOM05D005839 ORTHO05D005686 7.2e-18 96.7 232 33.6
Sabra02G0179700 Salix brachista HOM05D005839 ORTHO05D005686 7.2e-18 96.7 207 36.2
MSTRG.4261 Avicennia marina HOM05D005839 ORTHO05D005686 9.4e-18 96.3 202 33.7
Potri.002G235900 Populus trichocarpa HOM05D005839 ORTHO05D005686 3.6e-17 94.4 203 32.5
CSS0003065 Camellia sinensis var. sinensis HOM05D005839 ORTHO05D005686 4.7e-17 94.0 129 44.2
Eucgr.H02631 Eucalyptus grandis HOM05D005839 ORTHO05D005686 6.1e-17 93.6 115 43.5
Glyma.08G107100 Glycine max HOM05D005839 ORTHO05D005686 6.1e-17 93.6 239 31.8
Ah.04g149590 Amaranthus hybridus HOM05D005839 ORTHO05D005686 1.4e-16 92.4 121 40.5
Peaxi162Scf00286g00911 Petunia axillaris HOM05D005839 ORTHO05D005686 2.3e-16 91.7 190 33.2
CiPaw.01G113800 Carya illinoinensis HOM05D005839 ORTHO05D005686 3.0e-16 91.3 202 35.1
Atru.chr3.1776 Acer truncatum HOM05D005839 ORTHO05D005686 4.0e-16 90.9 124 44.4
arahy.Tifrunner.gnm1.ann1.52QBHW Arachis hypogaea HOM05D005839 ORTHO05D005686 5.2e-16 90.5 122 44.3
Hund24442 Selenicereus undatus HOM05D005839 ORTHO05D005686 5.2e-16 90.5 120 41.7
Lj4g0005413 Lotus japonicus HOM05D005839 ORTHO05D005686 6.7e-16 90.1 152 38.8
arahy.Tifrunner.gnm1.ann1.SAUI5N Arachis hypogaea HOM05D005839 ORTHO05D005686 1.1e-15 89.4 486 26.1
FAN12G3285 Fragaria x ananassa HOM05D005839 ORTHO05D005686 1.1e-15 89.4 381 26.8
HanXRQChr07g0186001 Helianthus annuus HOM05D005839 ORTHO05D005686 1.1e-15 89.4 179 36.9
AUR62020882 Chenopodium quinoa HOM05D005839 ORTHO05D005686 2.0e-15 88.6 228 30.3
ClCG05G007080 Citrullus lanatus HOM05D005839 ORTHO05D005686 2.6e-15 88.2 191 35.6
PGR083G0592 Punica granatum HOM05D005839 ORTHO05D005686 2.6e-15 88.2 278 25.9
Potri.014G146200 Populus trichocarpa HOM05D005839 ORTHO05D005686 3.3e-15 87.8 365 26.8
Prupe.1G170500 Prunus persica HOM05D005839 ORTHO05D005686 4.4e-15 87.4 136 41.9
SalBow2G2330 Salvia bowleyana HOM05D005839 ORTHO05D005686 7.5e-15 86.7 152 36.2
SalBow2G2888 Salvia bowleyana HOM05D005839 ORTHO05D005686 7.5e-15 86.7 152 36.2
FvH4_4g12870 Fragaria vesca HOM05D005839 ORTHO05D005686 9.7e-15 86.3 381 26.8
ECA233G2442 Erigeron canadensis HOM05D005839 ORTHO05D005686 1.3e-14 85.9 122 45.1
FAN17G1799 Fragaria x ananassa HOM05D005839 ORTHO05D005686 1.7e-14 85.5 380 27.6
Lsat_1_v5_gn_2_47881 Lactuca sativa HOM05D005839 ORTHO05D005686 1.7e-14 85.5 107 43.0
RcHm_v2.0_Chr4g0412531 Rosa chinensis HOM05D005839 ORTHO05D005686 1.7e-14 85.5 405 26.4
Glyma.05G150200 Glycine max HOM05D005839 ORTHO05D005686 2.2e-14 85.1 153 37.9
Phvul.003G048600 Phaseolus vulgaris HOM05D005839 ORTHO05D005686 2.2e-14 85.1 228 32.0
Hund19024 Selenicereus undatus HOM05D005839 ORTHO05D005686 2.2e-14 85.1 145 38.6
MELO3C006781.2 Cucumis melo HOM05D005839 ORTHO05D005686 2.8e-14 84.7 178 33.1
Sed0009973 Sechium edule HOM05D005839 ORTHO05D005686 2.8e-14 84.7 100 45.0
ATR1147G004 Amborella trichopoda HOM05D005839 ORTHO05D005686 3.7e-14 84.3 135 34.8
Haze_11680 Corylus avellana HOM05D005839 ORTHO05D005686 1.1e-13 82.8 146 35.6
AUR62018535 Chenopodium quinoa HOM05D005839 ORTHO05D005686 1.4e-13 82.4 232 28.4
ECA238G4483 Erigeron canadensis HOM05D000006 ORTHO05D000001 1.4e-13 82.4 741 24.0
Lsat_1_v5_gn_6_58881 Lactuca sativa HOM05D005839 ORTHO05D005686 1.4e-13 82.4 133 39.1
arahy.Tifrunner.gnm1.ann1.H8QNW8 Arachis hypogaea HOM05D005839 ORTHO05D005686 2.4e-13 81.6 72 52.8
arahy.Tifrunner.gnm1.ann1.Q2NVSC Arachis hypogaea HOM05D005839 ORTHO05D000011 3.1e-13 81.3 96 44.8
Oeu049072.1 Olea europaea HOM05D005839 ORTHO05D005686 3.1e-13 81.3 935 22.4
HanXRQChr02g0058441 Helianthus annuus HOM05D005839 ORTHO05D005686 4.1e-13 80.9 129 41.1
Gohir.A09G207800 Gossypium hirsutum HOM05D005839 ORTHO05D005686 5.3e-13 80.5 123 39.8
Lj6g0025267 Lotus japonicus HOM05D005839 ORTHO05D005686 7.0e-13 80.1 115 40.0
Actinidia28516 Actinidia chinensis HOM05D005839 ORTHO05D005686 9.1e-13 79.7 424 25.5
Gohir.A10G130200 Gossypium hirsutum HOM05D005839 ORTHO05D005686 9.1e-13 79.7 73 52.1
Gohir.D09G201300 Gossypium hirsutum HOM05D005839 ORTHO05D005686 9.1e-13 79.7 174 33.9
Gorai.011G150900 Gossypium raimondii HOM05D005839 ORTHO05D005686 9.1e-13 79.7 73 52.1
VMungo0251G1575 Vigna mungo HOM05D005839 ORTHO05D005686 9.1e-13 79.7 414 25.4
FvH4_1g13820 Fragaria vesca HOM05D005839 ORTHO05D005686 1.2e-12 79.3 59 54.2
Medtr8g081010 Medicago truncatula HOM05D005839 ORTHO05D005686 1.2e-12 79.3 223 33.6
Sed0018641 Sechium edule HOM05D005839 ORTHO05D005686 1.2e-12 79.3 168 31.5
EL10Ac3g07436 Beta vulgaris HOM05D005839 ORTHO05D005686 2.0e-12 78.6 242 30.6
Ca_16430_v3 Cicer arietinum L. HOM05D005839 ORTHO05D005686 2.7e-12 78.2 743 26.1
Duzib151G0492 Durio zibethinus HOM05D005839 ORTHO05D005686 5.9e-12 77.0 256 32.0
Duzib268G0552 Durio zibethinus HOM05D005839 ORTHO05D005686 5.9e-12 77.0 77 49.4
Aqoxy2G04047 Aquilegia oxysepala HOM05D005839 ORTHO05D005686 7.7e-12 76.6 92 45.7
Cpa.g.sc157.15 Carica papaya HOM05D005839 ORTHO05D005686 7.7e-12 76.6 208 34.1
arahy.Tifrunner.gnm1.ann1.62570H Arachis hypogaea HOM05D005839 ORTHO05D005686 1.0e-11 76.3 79 51.9
TAR636G0994 Trochodendron aralioides HOM05D005839 ORTHO05D005686 1.7e-11 75.5 141 34.8
Nitab4.5_0000037g0160 Nicotiana tabacum HOM05D005839 ORTHO05D005686 2.9e-11 74.7 659 23.2
TAR636G1565 Trochodendron aralioides HOM05D005839 ORTHO05D005686 2.9e-11 74.7 332 26.8
Actinidia35832 Actinidia chinensis HOM05D005839 ORTHO05D005686 3.8e-11 74.3 168 33.3
Oeu050722.1 Olea europaea HOM05D005839 ORTHO05D009229 3.8e-11 74.3 110 42.7
Solyc09g092550.4 Solanum lycopersicum HOM05D005839 ORTHO05D005686 3.8e-11 74.3 515 25.8
Ca_18007_v3 Cicer arietinum L. HOM05D005839 ORTHO05D005686 5.0e-11 73.9 638 23.5
Cpa.g.sc157.18 Carica papaya HOM05D005839 ORTHO05D005686 6.5e-11 73.6 132 39.4
Manes.05G199100 Manihot esculenta HOM05D005839 ORTHO05D005686 6.5e-11 73.6 272 28.3
Lalb_Chr12g0205781 Lupinus albus HOM05D005839 ORTHO05D005686 1.1e-10 72.8 484 24.2
Cpa.g.sc157.17 Carica papaya HOM05D005839 ORTHO05D005686 1.5e-10 72.4 137 42.3
Lalb_Chr07g0186961 Lupinus albus HOM05D005839 ORTHO05D005686 1.9e-10 72.0 36 75.0
Sopen09g035450 Solanum pennellii HOM05D005839 ORTHO05D005686 1.9e-10 72.0 607 23.9
TPR.G11806 Trifolium pratense HOM05D004269 ORTHO05D007106 7.2e-10 70.1 94 41.5
Duzib151G0277 Durio zibethinus HOM05D005839 ORTHO05D005686 9.4e-10 69.7 154 37.0
CsaV3_3G015820 Cucumis sativus L. HOM05D005839 ORTHO05D005686 2.1e-09 68.6 609 23.3
Nn8g41260 Nelumbo nucifera HOM05D005839 ORTHO05D005686 2.1e-09 68.6 247 27.5
arahy.Tifrunner.gnm1.ann1.CIA2YT Arachis hypogaea HOM05D005839 ORTHO05D005686 4.7e-09 67.4 86 43.0
PGSC0003DMG401021870 Solanum tuberosum HOM05D005839 ORTHO05D005686 4.7e-09 67.4 580 24.3
Atru.chr3.1775 Acer truncatum HOM05D005839 ORTHO05D005686 6.1e-09 67.0 119 41.2
Sc13g0000540 Simmondsia chinensis HOM05D005839 ORTHO05D005686 6.1e-09 67.0 120 38.3
PGSC0003DMG400021878 Solanum tuberosum HOM05D005839 ORTHO05D005686 6.1e-09 67.0 283 27.6
Thecc.04G191800 Theobroma cacao HOM05D005839 ORTHO05D005686 6.1e-09 67.0 261 29.1
Gohir.D10G136100 Gossypium hirsutum HOM05D005839 ORTHO05D005686 8.0e-09 66.6 873 22.2
Gorai.006G225000 Gossypium raimondii HOM05D005839 ORTHO05D005686 8.0e-09 66.6 638 22.7
TWI53G2144 Tripterygium wilfordii HOM05D005839 ORTHO05D005686 8.0e-09 66.6 329 24.6
arahy.Tifrunner.gnm1.ann1.98ICAR Arachis hypogaea HOM05D000340 ORTHO05D000821 1.0e-08 66.2 119 38.7
Dinv32166 Davidia involucrata HOM05D005839 ORTHO05D005686 1.8e-08 65.5 375 27.5
MD04G1021500 Malus domestica HOM05D005839 ORTHO05D005686 1.8e-08 65.5 668 22.9
QL06p027203 Quercus lobata HOM05D034196 ORTHO05D005686 4.0e-08 64.3 49 55.1
Psat7g076360 Pisum sativum HOM05D005839 ORTHO05D005686 5.2e-08 63.9 115 40.0
SEGI_24376 Sequoiadendron giganteum HOM05D005839 ORTHO05D005686 6.8e-08 63.5 39 59.0
arahy.Tifrunner.gnm1.ann1.SDG4EV Arachis hypogaea HOM05D005839 ORTHO05D005686 8.8e-08 63.2 133 34.6
Hma1.2p1_1457F.1_g284680 Hydrangea macrophylla HOM05D005839 ORTHO05D005686 1.2e-07 62.8 107 36.4
CANSAT78G1593 Cannabis sativa HOM05D005839 ORTHO05D005686 2.0e-07 62.0 206 27.2
CAN.G1684.4 Capsicum annuum HOM05D005839 ORTHO05D005686 2.0e-07 62.0 652 21.9
PSO017G5422 Papaver somniferum HOM05D037519 ORTHO05D037279 2.0e-07 62.0 53 50.9
MSTRG.9771 Avicennia marina HOM05D005839 ORTHO05D005686 2.6e-07 61.6 260 25.0
SMO153G0001 Selaginella moellendorffii HOM05D005839 ORTHO05D005686 3.4e-07 61.2 164 32.3
Gohir.D02G113200 Gossypium hirsutum HOM05D005839 ORTHO05D005686 4.4e-07 60.8 129 37.2
Gorai.005G128100 Gossypium raimondii HOM05D005839 ORTHO05D005686 4.4e-07 60.8 129 37.2
Mapoly0008s0012 Marchantia polymorpha HOM05D005839 ORTHO05D005686 1.7e-06 58.9 31 71.0
COL.COLO4_04260 Corchorus olitorius HOM05D005839 ORTHO05D005686 2.8e-06 58.2 683 23.9
DCAR_005282 Daucus carota HOM05D005839 ORTHO05D005686 2.8e-06 58.2 399 23.1
Hma1.2p1_0984F.1_g244280 Hydrangea macrophylla HOM05D005839 ORTHO05D005686 4.8e-06 57.4 123 35.8


User provided reference genes

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