Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC01g00188 Brassica carinata HOM05D005265 ORTHO05D006326 7.8e-65 250.4 131 100.0
A08p24490 Brassica napus HOM05D005265 ORTHO05D006326 7.8e-65 250.4 131 100.0
C03p76720 Brassica napus HOM05D005265 ORTHO05D006326 7.8e-65 250.4 131 100.0
BraA08t34405Z Brassica rapa HOM05D005265 ORTHO05D006326 7.8e-65 250.4 131 100.0
BcaB03g12211 Brassica carinata HOM05D005265 ORTHO05D006326 3.9e-64 248.1 131 98.5
CARHR029770 Cardamine hirsuta HOM05D005265 ORTHO05D006326 4.3e-63 244.6 131 96.9
AT1G30380 Arabidopsis thaliana HOM05D005265 ORTHO05D006326 1.2e-62 243.0 131 96.2
Sp1g26220 Schrenkiella parvula HOM05D005265 ORTHO05D006326 1.6e-62 242.7 131 96.9
BcaC05g27071 Brassica carinata HOM05D005265 ORTHO05D006326 4.7e-62 241.1 132 97.7
A09p36080 Brassica napus HOM05D005265 ORTHO05D006326 4.7e-62 241.1 132 97.7
C05p29330 Brassica napus HOM05D005265 ORTHO05D006326 4.7e-62 241.1 132 97.7
BolC5t31665H Brassica oleracea HOM05D005265 ORTHO05D006326 4.7e-62 241.1 132 97.7
BraA09t39132Z Brassica rapa HOM05D005265 ORTHO05D006326 1.4e-61 239.6 132 97.0
BolC3t19927H Brassica oleracea HOM05D005265 ORTHO05D006326 4.0e-61 238.0 131 96.9
AL1G44320 Arabidopsis lyrata HOM05D005265 ORTHO05D006326 6.8e-61 237.3 132 95.5
Thhalv10009090m.g Eutrema salsugineum HOM05D005265 ORTHO05D006326 2.6e-60 235.3 132 94.7
Carub.0001s2858 Capsella rubella HOM05D005265 ORTHO05D006326 7.5e-60 233.8 131 95.4
BcaB07g32648 Brassica carinata HOM05D005265 ORTHO05D006326 1.3e-59 233.0 133 95.5
Aa31LG6G5400 Aethionema arabicum HOM05D005265 ORTHO05D006326 3.2e-58 228.4 132 90.9
THA.LOC104812683 Tarenaya hassleriana HOM05D005265 ORTHO05D006326 5.4e-58 227.6 131 90.1
THA.LOC104814318 Tarenaya hassleriana HOM05D005265 ORTHO05D006326 1.6e-57 226.1 133 89.5
Lj1g0015817 Lotus japonicus HOM05D005265 ORTHO05D006326 3.9e-56 221.5 131 88.5
PGR083G1323 Punica granatum HOM05D005265 ORTHO05D006326 3.9e-56 221.5 131 88.5
PGSC0003DMG400020505 Solanum tuberosum HOM05D005265 ORTHO05D006326 5.1e-56 221.1 131 86.3
DCAR_004804 Daucus carota HOM05D005265 ORTHO05D006326 6.6e-56 220.7 131 86.3
CAN.G1882.1 Capsicum annuum HOM05D005265 ORTHO05D006326 8.6e-56 220.3 131 85.5
Solyc08g006930.3 Solanum lycopersicum HOM05D005265 ORTHO05D006326 1.1e-55 219.9 131 84.7
Nitab4.5_0002991g0030 Nicotiana tabacum HOM05D005265 ORTHO05D006326 1.5e-55 219.5 131 85.5
DCAR_004805 Daucus carota HOM05D005265 ORTHO05D006326 1.9e-55 219.2 131 86.3
Nitab4.5_0003368g0030 Nicotiana tabacum HOM05D005265 ORTHO05D006326 3.3e-55 218.4 131 84.7
Peaxi162Scf00045g02242 Petunia axillaris HOM05D005265 ORTHO05D006326 3.3e-55 218.4 132 86.4
Sopen08g002900 Solanum pennellii HOM05D005265 ORTHO05D006326 3.3e-55 218.4 131 84.0
GSVIVG01021584001 Vitis vinifera HOM05D005265 ORTHO05D006326 4.3e-55 218.0 131 87.8
arahy.Tifrunner.gnm1.ann1.9042LP Arachis hypogaea HOM05D005265 ORTHO05D006326 7.3e-55 217.2 131 86.3
Thecc.02G010800 Theobroma cacao HOM05D005265 ORTHO05D006326 1.6e-54 216.1 131 85.5
Cpa.g.sc17.68 Carica papaya HOM05D005265 ORTHO05D006326 4.7e-54 214.5 131 85.5
Dinv15893 Davidia involucrata HOM05D005265 ORTHO05D006326 4.7e-54 214.5 131 83.2
Nitab4.5_0000100g0280 Nicotiana tabacum HOM05D005265 ORTHO05D006326 4.7e-54 214.5 131 82.4
CANSAT35G0137 Cannabis sativa HOM05D005265 ORTHO05D006326 6.2e-54 214.2 131 85.5
Duzib132G0868 Durio zibethinus HOM05D005265 ORTHO05D006326 6.2e-54 214.2 131 85.5
Nitab4.5_0001809g0020 Nicotiana tabacum HOM05D005265 ORTHO05D006326 6.2e-54 214.2 131 82.4
arahy.Tifrunner.gnm1.ann1.ZS1M1K Arachis hypogaea HOM05D005265 ORTHO05D006326 8.1e-54 213.8 131 84.7
Glyma.15G194300 Glycine max HOM05D005265 ORTHO05D006326 8.1e-54 213.8 131 85.5
Prupe.4G088200 Prunus persica HOM05D005265 ORTHO05D006326 8.1e-54 213.8 130 86.2
COL.COLO4_17668 Corchorus olitorius HOM05D005265 ORTHO05D006326 1.1e-53 213.4 131 82.4
Eucgr.D00234 Eucalyptus grandis HOM05D005265 ORTHO05D006326 1.4e-53 213.0 132 86.4
Haze_05746 Corylus avellana HOM05D005265 ORTHO05D006326 1.8e-53 212.6 131 82.4
Migut.M01877 Erythranthe guttata HOM05D005265 ORTHO05D006326 2.3e-53 212.2 131 83.2
Hma1.2p1_0689F.1_g203690 Hydrangea macrophylla HOM05D005265 ORTHO05D006326 2.3e-53 212.2 131 83.2
Hma1.2p1_1418F.1_g282220 Hydrangea macrophylla HOM05D005265 ORTHO05D006326 2.3e-53 212.2 131 83.2
Manes.14G134800 Manihot esculenta HOM05D005265 ORTHO05D006326 2.3e-53 212.2 131 83.2
Oeu040090.1 Olea europaea HOM05D005265 ORTHO05D006326 4.0e-53 211.5 131 82.4
CiPaw.10G086700 Carya illinoinensis HOM05D005265 ORTHO05D006326 5.2e-53 211.1 131 83.2
Phvul.009G216400 Phaseolus vulgaris HOM05D005265 ORTHO05D006326 6.8e-53 210.7 131 84.0
VMungo1309G1099 Vigna mungo HOM05D005265 ORTHO05D006326 6.8e-53 210.7 131 84.0
Gohir.D02G238400 Gossypium hirsutum HOM05D005265 ORTHO05D006326 1.2e-52 209.9 130 83.1
Gorai.005G266900 Gossypium raimondii HOM05D005265 ORTHO05D006326 1.2e-52 209.9 130 83.1
HanXRQChr04g0113581 Helianthus annuus HOM05D005265 ORTHO05D006326 1.5e-52 209.5 131 81.7
Manes.06G061100 Manihot esculenta HOM05D005265 ORTHO05D006326 2.0e-52 209.1 130 82.3
SalBow8G5437 Salvia bowleyana HOM05D005265 ORTHO05D006326 2.0e-52 209.1 131 82.4
Atru.chr10.966 Acer truncatum HOM05D005265 ORTHO05D006326 3.4e-52 208.4 131 84.0
CiPaw.09G117100 Carya illinoinensis HOM05D005265 ORTHO05D006326 5.8e-52 207.6 131 82.4
ECA236G4370 Erigeron canadensis HOM05D005265 ORTHO05D006326 5.8e-52 207.6 133 82.0
Phvul.002G140800 Phaseolus vulgaris HOM05D005265 ORTHO05D006326 5.8e-52 207.6 131 83.2
AUR62038135 Chenopodium quinoa HOM05D005265 ORTHO05D006326 7.6e-52 207.2 132 84.8
Ca_12734_v3 Cicer arietinum L. HOM05D005265 ORTHO05D006326 7.6e-52 207.2 132 83.3
Ca_12740_v3 Cicer arietinum L. HOM05D005265 ORTHO05D006326 7.6e-52 207.2 132 83.3
Dinv32199 Davidia involucrata HOM05D005265 ORTHO05D006326 7.6e-52 207.2 131 80.2
Gohir.A03G216800 Gossypium hirsutum HOM05D005265 ORTHO05D006326 9.9e-52 206.8 130 82.3
PSO541G2745 Papaver somniferum HOM05D005265 ORTHO05D006326 9.9e-52 206.8 130 83.1
MSTRG.7528 Avicennia marina HOM05D005265 ORTHO05D006326 1.7e-51 206.1 133 79.7
Duzib248G0887 Durio zibethinus HOM05D005265 ORTHO05D006326 2.2e-51 205.7 131 84.0
HanXRQChr15g0481551 Helianthus annuus HOM05D005265 ORTHO05D006326 2.2e-51 205.7 131 81.7
PSO675G1042 Papaver somniferum HOM05D005265 ORTHO05D006326 2.2e-51 205.7 130 82.3
Sc24g0001600 Simmondsia chinensis HOM05D005265 ORTHO05D006326 2.2e-51 205.7 131 80.9
Lalb_Chr08g0233241 Lupinus albus HOM05D005265 ORTHO05D006326 2.9e-51 205.3 131 80.9
RcHm_v2.0_Chr5g0015361 Rosa chinensis HOM05D005265 ORTHO05D006326 2.9e-51 205.3 130 85.4
Cfa000859 Carpinus fangiana HOM05D005265 ORTHO05D006326 3.7e-51 204.9 131 79.4
Medtr1g026820 Medicago truncatula HOM05D005265 ORTHO05D006326 3.7e-51 204.9 132 81.1
QL05p054070 Quercus lobata HOM05D005265 ORTHO05D006326 4.9e-51 204.5 131 80.9
SGA_v2.0_scaffold223G42844 Striga asiatica HOM05D005265 ORTHO05D006326 4.9e-51 204.5 131 80.9
CSS0007721 Camellia sinensis var. sinensis HOM05D005265 ORTHO05D006326 6.4e-51 204.1 132 81.1
CSS0016265 Camellia sinensis var. sinensis HOM05D005265 ORTHO05D006326 6.4e-51 204.1 132 81.1
AUR62009823 Chenopodium quinoa HOM05D005265 ORTHO05D006326 6.4e-51 204.1 132 84.1
FAN16G0550 Fragaria x ananassa HOM05D005265 ORTHO05D006326 8.4e-51 203.8 130 83.8
EL10Ac7g15766 Beta vulgaris HOM05D005265 ORTHO05D006326 1.1e-50 203.4 131 80.2
Glyma.09G087700 Glycine max HOM05D005265 ORTHO05D006326 1.1e-50 203.4 134 82.8
Potri.006G254200 Populus trichocarpa HOM05D005265 ORTHO05D006326 1.1e-50 203.4 134 82.8
FAN25G1721 Fragaria x ananassa HOM05D005265 ORTHO05D006326 1.4e-50 203.0 130 83.8
Sabra18G0029900 Salix brachista HOM05D005265 ORTHO05D006326 2.4e-50 202.2 132 82.6
TAR624G1044 Trochodendron aralioides HOM05D005265 ORTHO05D006326 7.1e-50 200.7 131 81.7
FvH4_3g09680 Fragaria vesca HOM05D005265 ORTHO05D006326 9.2e-50 200.3 130 82.3
FAN11G2263 Fragaria x ananassa HOM05D005265 ORTHO05D006326 9.2e-50 200.3 130 82.3
MD05G1276100 Malus domestica HOM05D005265 ORTHO05D006326 9.2e-50 200.3 134 79.9
Ciclev10017170m.g Citrus clementina HOM05D005265 ORTHO05D006326 1.2e-49 199.9 129 80.6
Cc09_g08490 Coffea canephora HOM05D005265 ORTHO05D006326 1.2e-49 199.9 131 77.9
MD00G1109700 Malus domestica HOM05D005265 ORTHO05D006326 1.2e-49 199.9 130 80.0
CDE12G0489 Ceratophyllum demersum HOM05D005265 ORTHO05D006326 2.7e-49 198.7 130 78.5
TWI09G0405 Tripterygium wilfordii HOM05D005265 ORTHO05D006326 2.7e-49 198.7 132 78.8
ClCG01G025030 Citrullus lanatus HOM05D005265 ORTHO05D006326 3.5e-49 198.4 132 78.0
Actinidia13436 Actinidia chinensis HOM05D005265 ORTHO05D006326 7.8e-49 197.2 131 78.6
CDE01G0641 Ceratophyllum demersum HOM05D005265 ORTHO05D006326 1.3e-48 196.4 130 77.7
Potri.018G027600 Populus trichocarpa HOM05D005265 ORTHO05D006326 1.3e-48 196.4 132 81.1
TPR.G24497 Trifolium pratense HOM05D005265 ORTHO05D006326 1.3e-48 196.4 133 80.5
Lsat_1_v5_gn_7_32001 Lactuca sativa HOM05D005265 ORTHO05D006326 2.3e-48 195.7 133 78.2
Aqoxy4G00026 Aquilegia oxysepala HOM05D005265 ORTHO05D006326 3.0e-48 195.3 130 78.5
Duzib052G0655 Durio zibethinus HOM05D005265 ORTHO05D006326 3.9e-48 194.9 132 79.5
TAR626G0103 Trochodendron aralioides HOM05D005265 ORTHO05D006326 5.1e-48 194.5 132 79.5
TWI73G0862 Tripterygium wilfordii HOM05D005265 ORTHO05D006326 1.5e-47 193.0 132 77.3
Sed0026922 Sechium edule HOM05D005265 ORTHO05D006326 2.5e-47 192.2 133 77.4
TAR626G0742 Trochodendron aralioides HOM05D005265 ORTHO05D006326 2.5e-47 192.2 132 78.8
Ah.08g216220 Amaranthus hybridus HOM05D000506 ORTHO05D000369 5.6e-47 191.0 124 79.0
Actinidia33666 Actinidia chinensis HOM05D005265 ORTHO05D006326 7.3e-47 190.7 131 76.3
unitig_61.g26080 Utricularia gibba HOM05D005265 ORTHO05D006326 9.6e-47 190.3 129 75.2
vmacro03415 Vaccinium macrocarpon HOM05D005265 ORTHO05D006326 1.2e-46 189.9 131 75.6
CsaV3_6G052210 Cucumis sativus L. HOM05D005265 ORTHO05D006326 1.6e-46 189.5 130 76.2
Sed0012654 Sechium edule HOM05D005265 ORTHO05D006326 1.6e-46 189.5 132 76.5
MELO3C007091.2 Cucumis melo HOM05D005265 ORTHO05D006326 2.8e-46 188.7 132 77.3
MBI02_g44634_MAGBIO Magnolia biondii HOM05D005265 ORTHO05D006326 8.1e-46 187.2 130 76.2
MBI02_g40641_MAGBIO Magnolia biondii HOM05D005265 ORTHO05D006326 1.4e-45 186.4 130 76.2
HPP92_019500 Vanilla planifolia HOM05D005265 ORTHO05D006326 1.8e-45 186.0 129 75.2
Psat0s1315g0080 Pisum sativum HOM05D005265 ORTHO05D006326 2.4e-45 185.7 163 64.4
Hund18717 Selenicereus undatus HOM05D005265 ORTHO05D006326 8.9e-45 183.7 137 73.0
Sp4g16930 Schrenkiella parvula HOM05D005265 ORTHO05D006326 1.5e-44 183.0 133 74.4
FAN21G2293 Fragaria x ananassa HOM05D005265 ORTHO05D006326 5.8e-44 181.0 104 89.4
Lalb_Chr23g0275991 Lupinus albus HOM05D005265 ORTHO05D006326 1.1e-42 176.8 101 88.1
Rhsim13G0119400 Rhododendron simsii HOM05D005265 ORTHO05D006326 1.1e-42 176.8 131 71.8
Zm00001eb299990 Zea mays HOM05D005265 ORTHO05D006326 3.2e-42 175.3 132 70.5
ATR0681G400 Amborella trichopoda HOM05D005265 ORTHO05D006326 4.2e-42 174.9 130 72.3
Os07g0148900 Oryza sativa ssp. japonica HOM05D005265 ORTHO05D006326 2.3e-40 169.1 124 69.4
Pp3c13_10540 Physcomitrium patens HOM05D005265 ORTHO05D006326 5.6e-39 164.5 124 69.4
Pp3c3_10740 Physcomitrium patens HOM05D005265 ORTHO05D006326 4.8e-38 161.4 127 69.3
Mapoly0125s0033 Marchantia polymorpha HOM05D005265 ORTHO05D006326 1.1e-37 160.2 130 67.7
SEGI_05857 Sequoiadendron giganteum HOM05D005265 ORTHO05D006326 2.6e-36 155.6 127 65.4
Nn3g20272 Nelumbo nucifera HOM05D005265 ORTHO05D006326 3.2e-34 148.7 129 65.9
Nn4g26654 Nelumbo nucifera HOM05D005265 ORTHO05D006326 7.9e-33 144.1 129 65.1
Pp3c13_10520 Physcomitrium patens HOM05D005265 ORTHO05D006326 1.7e-32 142.9 130 59.2
AagrBONN_evm.TU.Sc2ySwM_369.184 Anthoceros agrestis HOM05D005265 ORTHO05D006326 3.6e-30 135.2 124 62.9
CBR_g39729 Chara braunii HOM05D005265 ORTHO05D006326 1.3e-24 116.7 127 52.8
SMO358G0410 Selaginella moellendorffii HOM05D005265 ORTHO05D006326 3.7e-22 108.6 78 71.8
Cre17.g724300 Chlamydomonas reinhardtii HOM05D005265 ORTHO05D006326 1.7e-19 99.8 114 51.8
Nn8g40769 Nelumbo nucifera HOM05D005265 ORTHO05D006326 1.9e-15 86.3 68 67.6
RcHm_v2.0_Chr5g0036151 Rosa chinensis HOM05D005265 ORTHO05D006326 2.6e-12 75.9 48 79.2
PRCOL_00005455 Prasinoderma coloniale HOM05D005265 ORTHO05D006326 3.5e-09 65.5 94 41.5
MCO04G068 Micromonas commoda HOM05D005265 ORTHO05D006326 5.1e-08 61.6 78 43.6


User provided reference genes

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