Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C03p76500 Brassica napus HOM05D003594 ORTHO05D004268 0.0e+00 1530.0 806 100.0
BcaC01g00173 Brassica carinata HOM05D003594 ORTHO05D004268 0.0e+00 1528.1 806 99.6
BolC3t19907H Brassica oleracea HOM05D003594 ORTHO05D004268 0.0e+00 1459.5 807 95.8
A08p24610 Brassica napus HOM05D003594 ORTHO05D004268 0.0e+00 1418.7 810 92.6
BcaB03g12203 Brassica carinata HOM05D003594 ORTHO05D004268 0.0e+00 1362.4 809 89.1
Sp1g26080 Schrenkiella parvula HOM05D003594 ORTHO05D004268 0.0e+00 1222.6 834 79.4
BcaC05g27050 Brassica carinata HOM05D003594 ORTHO05D004268 0.0e+00 1206.8 829 79.3
BolC5t31639H Brassica oleracea HOM05D003594 ORTHO05D004268 0.0e+00 1206.0 829 79.3
C05p29080 Brassica napus HOM05D003594 ORTHO05D004268 0.0e+00 1202.6 829 78.9
Thhalv10006813m.g Eutrema salsugineum HOM05D003594 ORTHO05D004268 0.0e+00 1198.7 831 79.7
BcaB07g32622 Brassica carinata HOM05D003594 ORTHO05D004268 0.0e+00 1187.9 835 78.2
BraA09t39154Z Brassica rapa HOM05D003594 ORTHO05D004268 0.0e+00 1186.0 834 77.6
A09p36300 Brassica napus HOM05D003594 ORTHO05D004268 0.0e+00 1184.1 834 77.6
Carub.0001s2847 Capsella rubella HOM05D003594 ORTHO05D004268 0.0e+00 1164.1 834 76.7
AT1G30240 Arabidopsis thaliana HOM05D003594 ORTHO05D004268 0.0e+00 1141.7 838 75.7
AL1G44160 Arabidopsis lyrata HOM05D003594 ORTHO05D004268 0.0e+00 1133.6 851 74.7
CARHR029630 Cardamine hirsuta HOM05D003594 ORTHO05D004268 0.0e+00 1112.1 828 74.3
BraA08t34416Z Brassica rapa HOM05D003594 ORTHO05D004268 0.0e+00 1092.8 595 96.3
THA.LOC104820658 Tarenaya hassleriana HOM05D003594 ORTHO05D004268 1.1e-265 920.2 841 61.6
Aa31sc91G80 Aethionema arabicum HOM05D003594 ORTHO05D004268 2.7e-253 879.0 837 62.0
Dinv11846 Davidia involucrata HOM05D003594 ORTHO05D004268 5.5e-185 652.1 849 46.3
TAR622G0410 Trochodendron aralioides HOM05D003594 ORTHO05D004268 1.3e-181 641.0 831 46.8
CiPaw.13G039500 Carya illinoinensis HOM05D003594 ORTHO05D004268 1.4e-180 637.5 675 52.7
CSS0031708 Camellia sinensis var. sinensis HOM05D003594 ORTHO05D004268 4.6e-176 622.5 719 48.5
CSS0019720 Camellia sinensis var. sinensis HOM05D003594 ORTHO05D004268 7.9e-176 621.7 719 48.5
Actinidia06697 Actinidia chinensis HOM05D003594 ORTHO05D004268 1.0e-175 621.3 798 46.1
Thecc.10G111800 Theobroma cacao HOM05D003594 ORTHO05D004268 4.3e-174 615.9 837 45.0
Cfa011279 Carpinus fangiana HOM05D003594 ORTHO05D004268 1.3e-173 614.4 648 53.5
Gohir.A06G169100 Gossypium hirsutum HOM05D003594 ORTHO05D004268 8.2e-173 611.7 710 50.0
Nn4g23115 Nelumbo nucifera HOM05D003594 ORTHO05D004268 1.1e-172 611.3 714 49.0
TWI38G1480 Tripterygium wilfordii HOM05D003594 ORTHO05D004268 1.1e-172 611.3 716 50.1
Gohir.D06G176700 Gossypium hirsutum HOM05D003594 ORTHO05D004268 1.5e-171 607.4 710 49.4
Lj3C928G2 Lonicera japonica HOM05D003594 ORTHO05D004268 6.5e-170 602.1 845 45.0
Gorai.010G208000 Gossypium raimondii HOM05D003594 ORTHO05D004268 5.5e-169 599.0 710 49.2
PSO478G3548 Papaver somniferum HOM05D003594 ORTHO05D004268 9.4e-169 598.2 734 48.0
QL04p046058 Quercus lobata HOM05D003594 ORTHO05D004268 2.7e-168 596.7 734 48.0
PSO017G2985 Papaver somniferum HOM05D003594 ORTHO05D004268 6.7e-167 592.0 734 47.5
Lsat_1_v5_gn_2_104580 Lactuca sativa HOM05D003594 ORTHO05D004268 1.3e-165 587.8 650 50.8
Prupe.3G003400 Prunus persica HOM05D003594 ORTHO05D004268 1.4e-164 584.3 658 50.9
Manes.11G108901 Manihot esculenta HOM05D003594 ORTHO05D004268 6.9e-164 582.0 795 45.2
RcHm_v2.0_Chr7g0211051 Rosa chinensis HOM05D003594 ORTHO05D004268 6.9e-164 582.0 833 43.8
Ciclev10027803m.g Citrus clementina HOM05D003594 ORTHO05D004268 2.2e-162 577.0 802 44.3
Lalb_Chr10g0100231 Lupinus albus HOM05D003594 ORTHO05D004268 1.1e-161 574.7 829 42.8
FAN18G4146 Fragaria x ananassa HOM05D003594 ORTHO05D004268 1.4e-161 574.3 646 49.2
Duzib052G0830 Durio zibethinus HOM05D003594 ORTHO05D004268 2.5e-161 573.5 708 47.6
FAN18G3192 Fragaria x ananassa HOM05D003594 ORTHO05D004268 7.2e-161 572.0 646 49.1
COL.COLO4_28858 Corchorus olitorius HOM05D003594 ORTHO05D004268 2.7e-160 570.1 653 50.2
Rhsim03G0098900 Rhododendron simsii HOM05D003594 ORTHO05D004268 1.0e-159 568.2 729 46.0
FvH4_5g22640 Fragaria vesca HOM05D003594 ORTHO05D004268 1.8e-159 567.4 817 43.0
DCAR_006339 Daucus carota HOM05D003594 ORTHO05D004268 1.5e-158 564.3 633 48.8
Potri.010G238000 Populus trichocarpa HOM05D003594 ORTHO05D004268 7.4e-158 562.0 722 46.4
Glyma.07G058700 Glycine max HOM05D003594 ORTHO05D004268 1.3e-157 561.2 651 49.0
CANSAT56G3624 Cannabis sativa HOM05D003594 ORTHO05D004268 2.2e-157 560.5 663 49.8
MD17G1284000 Malus domestica HOM05D003594 ORTHO05D004268 1.8e-156 557.4 674 49.1
GSVIVG01032568001 Vitis vinifera HOM05D003594 ORTHO05D004268 2.6e-155 553.5 659 48.6
HanXRQChr11g0342181 Helianthus annuus HOM05D003594 ORTHO05D004268 5.9e-155 552.4 826 42.9
Glyma.16G027600 Glycine max HOM05D003594 ORTHO05D004268 1.7e-154 550.8 651 47.8
ECA238G3867 Erigeron canadensis HOM05D003594 ORTHO05D004268 2.2e-154 550.4 700 46.3
Cc02_g29780 Coffea canephora HOM05D003594 ORTHO05D004268 3.8e-154 549.7 712 46.6
Sabra10G0186200 Salix brachista HOM05D003594 ORTHO05D004268 3.8e-154 549.7 734 45.2
Sed0007749 Sechium edule HOM05D003594 ORTHO05D004268 5.0e-154 549.3 661 48.6
Migut.F00912 Erythranthe guttata HOM05D003594 ORTHO05D004268 1.9e-153 547.4 748 44.5
Sed0011677 Sechium edule HOM05D003594 ORTHO05D004268 3.2e-153 546.6 652 48.0
Medtr3g075460 Medicago truncatula HOM05D003594 ORTHO05D004268 9.4e-153 545.0 739 45.7
Ca_23589_v3 Cicer arietinum L. HOM05D003594 ORTHO05D004268 1.6e-152 544.3 653 47.9
ClCG09G007450 Citrullus lanatus HOM05D003594 ORTHO05D004268 2.7e-152 543.5 671 48.4
FAN04G1757 Fragaria x ananassa HOM05D003594 ORTHO05D004268 2.7e-152 543.5 648 47.7
VMungo0331G0994 Vigna mungo HOM05D003594 ORTHO05D004268 6.7e-151 538.9 654 48.0
Phvul.010G110700 Phaseolus vulgaris HOM05D003594 ORTHO05D004268 2.6e-150 537.0 653 48.2
Aqoxy3G00687_Aqoxy3G00688 Aquilegia oxysepala HOM05D003594 ORTHO05D004268 3.3e-150 536.6 708 46.5
Peaxi162Scf00173g00417 Petunia axillaris HOM05D003594 ORTHO05D004268 5.7e-150 535.8 656 45.4
ATR0737G134 Amborella trichopoda HOM05D003594 ORTHO05D004268 7.5e-150 535.4 718 44.8
Sopen11g002930 Solanum pennellii HOM05D003594 ORTHO05D004268 1.3e-149 534.6 760 43.0
Solyc11g007010.2 Solanum lycopersicum HOM05D003594 ORTHO05D004268 1.7e-149 534.3 760 43.0
Nitab4.5_0005622g0060 Nicotiana tabacum HOM05D003594 ORTHO05D004268 2.2e-149 533.9 827 40.5
Lj3g0004598 Lotus japonicus HOM05D003594 ORTHO05D004268 1.4e-148 531.2 653 48.7
MBI02_g14487_MAGBIO Magnolia biondii HOM05D003594 ORTHO05D004268 2.4e-148 530.4 722 45.0
Medtr8g028030 Medicago truncatula HOM05D003594 ORTHO05D004268 2.0e-147 527.3 837 40.7
FAN08G1578 Fragaria x ananassa HOM05D003594 ORTHO05D004268 2.7e-147 526.9 646 46.4
Nitab4.5_0001437g0090 Nicotiana tabacum HOM05D003594 ORTHO05D004268 1.3e-146 524.6 808 40.7
Ah.04g162260 Amaranthus hybridus HOM05D003594 ORTHO05D004268 7.2e-145 518.8 683 44.9
ClCG05G018390 Citrullus lanatus HOM05D003594 ORTHO05D004268 1.0e-143 515.0 718 44.7
SalBow6G4638 Salvia bowleyana HOM05D003594 ORTHO05D004268 1.8e-143 514.2 672 45.8
Sc06g0002330 Simmondsia chinensis HOM05D003594 ORTHO05D004268 2.3e-143 513.8 674 44.7
Psat4g159240 Pisum sativum HOM05D003594 ORTHO05D004268 3.0e-143 513.5 834 40.0
Cpa.g.sc183.16 Carica papaya HOM05D003594 ORTHO05D004268 5.2e-143 512.7 638 48.3
TPR.G8757 Trifolium pratense HOM05D003594 ORTHO05D004268 3.4e-142 510.0 622 48.2
Eucgr.J00989 Eucalyptus grandis HOM05D003594 ORTHO05D004268 9.8e-142 508.4 740 43.4
arahy.Tifrunner.gnm1.ann1.8EA83L Arachis hypogaea HOM05D003594 ORTHO05D004268 4.8e-141 506.1 655 45.8
Lj1g0028024 Lotus japonicus HOM05D003594 ORTHO05D004268 5.4e-140 502.7 658 46.4
Cc02_g09740 Coffea canephora HOM05D003594 ORTHO05D004268 7.0e-140 502.3 588 48.3
PGSC0003DMG400023977 Solanum tuberosum HOM05D003594 ORTHO05D004268 7.7e-139 498.8 689 42.2
PGR044G2128 Punica granatum HOM05D003594 ORTHO05D004268 3.2e-137 493.4 827 41.0
HPP92_013069 Vanilla planifolia HOM05D003594 ORTHO05D004268 6.8e-135 485.7 681 43.9
Oeu025587.1 Olea europaea HOM05D003594 ORTHO05D004268 1.2e-134 485.0 721 41.9
Dinv06533 Davidia involucrata HOM05D003594 ORTHO05D004268 1.4e-132 478.0 647 45.7
Nn3g17199 Nelumbo nucifera HOM05D003594 ORTHO05D004268 9.2e-132 475.3 540 50.2
MELO3C012354.2 Cucumis melo HOM05D003594 ORTHO05D004268 1.2e-131 474.9 708 42.2
EL10Ac4g08659 Beta vulgaris HOM05D003594 ORTHO05D004268 5.9e-131 472.6 671 44.0
SGA_v2.0_scaffold295G47526 Striga asiatica HOM05D003594 ORTHO05D004268 5.9e-131 472.6 812 39.2
arahy.Tifrunner.gnm1.ann1.Q3AX4Y Arachis hypogaea HOM05D003594 ORTHO05D004268 1.5e-126 458.0 711 41.4
AUR62042073 Chenopodium quinoa HOM05D003594 ORTHO05D004268 1.8e-124 451.1 672 41.1
Os05g0295900 Oryza sativa ssp. japonica HOM05D003594 ORTHO05D004268 6.2e-120 436.0 729 38.1
CDE09G0981 Ceratophyllum demersum HOM05D003594 ORTHO05D004268 1.7e-117 427.9 832 36.8
Gohir.D09G017550 Gossypium hirsutum HOM05D003594 ORTHO05D004268 8.1e-112 409.1 654 40.5
Gorai.006G020600 Gossypium raimondii HOM05D003594 ORTHO05D004268 1.8e-111 407.9 654 40.8
AUR62043305 Chenopodium quinoa HOM05D003594 ORTHO05D004268 2.4e-108 397.5 648 38.7
CAN.G645.3 Capsicum annuum HOM05D003594 ORTHO05D004268 5.4e-108 396.4 528 43.8
Mapoly0108s0040 Marchantia polymorpha HOM05D003594 ORTHO05D004268 8.6e-106 389.0 678 37.2
CsaV3_5G035440 Cucumis sativus L. HOM05D003594 ORTHO05D004268 3.3e-105 387.1 544 44.7
CsaV3_5G035480 Cucumis sativus L. HOM05D003594 ORTHO05D004268 3.3e-105 387.1 544 44.7
Pp3c8_9490 Physcomitrium patens HOM05D003594 ORTHO05D004268 3.4e-94 350.5 691 35.3
Zm00001eb231330 Zea mays HOM05D003594 ORTHO05D004268 1.7e-93 348.2 564 40.8
CsaV3_5G035460 Cucumis sativus L. HOM05D003594 ORTHO05D004268 3.8e-93 347.1 445 46.3
Phvul.003G001400 Phaseolus vulgaris HOM05D003594 ORTHO05D004268 2.1e-91 341.3 449 48.8
MD09G1289100 Malus domestica HOM05D003594 ORTHO05D004268 1.3e-90 338.6 453 47.2
Cc02_g09730 Coffea canephora HOM05D003594 ORTHO05D004268 3.9e-90 337.0 355 51.5
Atru.chr12.1013 Acer truncatum HOM05D003594 ORTHO05D004268 2.8e-88 330.9 592 38.7
Cc02_g29810 Coffea canephora HOM05D003594 ORTHO05D004268 1.1e-87 328.9 702 36.0
Actinidia18596 Actinidia chinensis HOM05D003594 ORTHO05D004268 3.0e-82 310.8 522 39.3
Pp3c15_8100 Physcomitrium patens HOM05D003594 ORTHO05D004268 1.6e-80 305.1 658 34.0
Pp3c15_8103 Physcomitrium patens HOM05D003594 ORTHO05D004268 1.6e-80 305.1 658 34.0
SMO364G0406 Selaginella moellendorffii HOM05D003594 ORTHO05D004268 2.1e-80 304.7 698 34.0
Hund23993 Selenicereus undatus HOM05D003594 ORTHO05D004268 3.1e-79 300.8 409 45.0
Hund22286 Selenicereus undatus HOM05D003594 ORTHO05D004268 9.0e-79 299.3 409 44.7
Hma1.2p1_0145F.1_g065330 Hydrangea macrophylla HOM05D003594 ORTHO05D004268 5.5e-76 290.0 338 48.5
CBR_g29875 Chara braunii HOM05D003594 ORTHO05D000497 1.0e-74 285.8 823 28.9
TWI63G1716 Tripterygium wilfordii HOM05D003594 ORTHO05D004268 2.2e-69 268.1 277 50.2
CBR_g45421 Chara braunii HOM05D003594 ORTHO05D004268 1.9e-68 265.0 805 28.9
Haze_02500 Corylus avellana HOM05D003594 ORTHO05D004268 4.8e-64 250.4 454 37.2
BcaB08g34816 Brassica carinata HOM05D002573 ORTHO05D002918 5.7e-57 226.9 146 82.9
Gohir.A09G018100 Gossypium hirsutum HOM05D003594 ORTHO05D004268 9.7e-57 226.1 430 38.4
CsaV3_5G035510 Cucumis sativus L. HOM05D003594 ORTHO05D004268 4.5e-54 217.2 225 51.6
MD09G1292100 Malus domestica HOM05D003594 ORTHO05D004268 6.1e-51 206.8 304 46.4
GSVIVG01011385001 Vitis vinifera HOM05D003594 ORTHO05D004268 2.8e-48 198.0 523 30.4
Os06g0343900 Oryza sativa ssp. japonica HOM05D003594 ORTHO05D004268 6.9e-47 193.4 334 38.9
A03p57890 Brassica napus HOM05D003594 ORTHO05D004268 1.2e-46 192.6 111 85.6
A02p30260 Brassica napus HOM05D003594 ORTHO05D004268 2.0e-46 191.8 111 84.7
C02p37120 Brassica napus HOM05D003594 ORTHO05D004268 2.5e-44 184.9 123 77.2
Aqoxy2G02949 Aquilegia oxysepala HOM05D003594 ORTHO05D004268 6.1e-43 180.3 559 29.9
SEGI_27789 Sequoiadendron giganteum HOM05D003594 ORTHO05D004268 8.8e-42 176.4 203 49.3
AagrBONN_evm.TU.Sc2ySwM_228.2673 Anthoceros agrestis HOM05D003594 ORTHO05D004268 2.8e-40 171.4 335 37.9
MSTRG.27538 Avicennia marina HOM05D003594 ORTHO05D004268 2.1e-35 155.2 141 56.0
MSTRG.27536 Avicennia marina HOM05D003594 ORTHO05D004268 3.6e-35 154.5 269 38.7
Atru.chr12.1014 Acer truncatum HOM05D003594 ORTHO05D004268 1.8e-34 152.1 142 52.8
CsaV3_5G035420 Cucumis sativus L. HOM05D003594 ORTHO05D004268 2.0e-33 148.7 156 50.6
C03p15410 Brassica napus HOM05D003594 ORTHO05D004268 1.3e-32 146.0 88 85.2
BolC5t29265H Brassica oleracea HOM05D003594 ORTHO05D004268 2.2e-32 145.2 82 82.9
C03p91380 Brassica napus HOM05D003594 ORTHO05D004268 3.1e-31 141.4 82 81.7
BolC3t21454H Brassica oleracea HOM05D003594 ORTHO05D004268 3.1e-31 141.4 82 81.7
BolC7t45516H Brassica oleracea HOM05D003594 ORTHO05D004268 2.0e-30 138.7 82 80.5
MSTRG.11586 Avicennia marina HOM05D003594 ORTHO05D004268 1.7e-29 135.6 119 57.1
Gohir.A09G018150 Gossypium hirsutum HOM05D003594 ORTHO05D004268 5.5e-28 130.6 184 41.3
ATR0564G271 Amborella trichopoda HOM05D003594 ORTHO05D004268 2.1e-27 128.6 260 37.3
Cc02_g29830 Coffea canephora HOM05D003594 ORTHO05D004268 2.1e-27 128.6 144 50.0
Haze_02506 Corylus avellana HOM05D003594 ORTHO05D004268 2.7e-27 128.3 120 55.8
Nn3g17196 Nelumbo nucifera HOM05D003594 ORTHO05D004268 3.6e-27 127.9 207 41.1
BraA03t14853Z Brassica rapa HOM05D003594 ORTHO05D004268 6.1e-27 127.1 72 84.7
Psat6g218640 Pisum sativum HOM05D001312 ORTHO05D001832 6.1e-27 127.1 232 38.4
C03p54150 Brassica napus HOM05D003594 ORTHO05D004268 1.4e-26 125.9 72 83.3
QL04p046254 Quercus lobata HOM05D003594 ORTHO05D004268 1.8e-26 125.6 232 38.4
Hund22291 Selenicereus undatus HOM05D003594 ORTHO05D004268 4.0e-26 124.4 204 41.7
MD09G1289200 Malus domestica HOM05D003594 ORTHO05D004268 6.8e-26 123.6 123 52.8
SHI24306 Sapria himalayana HOM05D003594 ORTHO05D004268 8.8e-26 123.2 239 34.7
SEGI_05252 Sequoiadendron giganteum HOM05D003594 ORTHO05D004268 2.0e-25 122.1 219 37.9
Hma1.2p1_2419F.1_g321820 Hydrangea macrophylla HOM05D003594 ORTHO05D004268 4.8e-24 117.5 117 47.9
SHI24302 Sapria himalayana HOM05D003594 ORTHO05D004268 4.2e-20 104.4 135 45.9
AagrBONN_evm.TU.Sc2ySwM_228.2672 Anthoceros agrestis HOM05D003594 ORTHO05D004268 7.0e-15 87.0 129 36.4
Actinidia36695 Actinidia chinensis HOM05D003594 ORTHO05D004268 9.2e-15 86.7 119 47.9
CsaV3_5G035520 Cucumis sativus L. HOM05D003594 ORTHO05D004268 2.7e-14 85.1 181 36.5
Aa31LG6G5510 Aethionema arabicum HOM05D003594 ORTHO05D004268 1.3e-13 82.8 79 59.5
Haze_25332 Corylus avellana HOM05D003594 ORTHO05D004268 3.8e-13 81.3 92 52.2
Haze_02499 Corylus avellana HOM05D003594 ORTHO05D004268 8.6e-13 80.1 92 52.2
AL1G44190 Arabidopsis lyrata HOM05D003594 ORTHO05D004268 1.2e-11 76.3 126 43.7
SHI24307 Sapria himalayana HOM05D003594 ORTHO05D004268 1.2e-11 76.3 171 37.4
Psat6g091000 Pisum sativum HOM05D003335 ORTHO05D003853 6.1e-11 73.9 62 59.7
Psat6g226760 Pisum sativum HOM05D003335 ORTHO05D003853 6.1e-11 73.9 62 58.1
BcaB08g34815 Brassica carinata HOM05D003594 ORTHO05D004268 1.8e-10 72.4 44 77.3
CAN.G645.4 Capsicum annuum HOM05D003594 ORTHO05D004268 3.4e-09 68.2 83 47.0
Hma1.2p1_0053F.1_g030920 Hydrangea macrophylla HOM05D003594 ORTHO05D004268 5.7e-09 67.4 73 46.6


User provided reference genes

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