Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C03p75510 Brassica napus HOM05D005954 ORTHO05D007347 4.3e-73 278.1 163 100.0
BolC3t19807H Brassica oleracea HOM05D005954 ORTHO05D007347 1.5e-70 269.6 163 96.9
BcaNung06755 Brassica carinata HOM05D005954 ORTHO05D007347 5.0e-69 264.6 163 95.7
A08p25330 Brassica napus HOM05D005954 ORTHO05D007347 8.5e-69 263.8 162 96.3
BraA08t34485Z Brassica rapa HOM05D005954 ORTHO05D007347 8.5e-69 263.8 162 96.3
BcaNung06433 Brassica carinata HOM05D005954 ORTHO05D007347 7.4e-65 250.8 163 92.0
Sp1g25010 Schrenkiella parvula HOM05D005954 ORTHO05D007347 2.6e-62 242.3 163 90.2
Thhalv10008967m.g Eutrema salsugineum HOM05D005954 ORTHO05D007347 6.5e-61 237.7 163 87.7
A09p37340 Brassica napus HOM05D005954 ORTHO05D007347 1.4e-60 236.5 161 88.8
BraA09t39243Z Brassica rapa HOM05D005954 ORTHO05D007347 1.4e-60 236.5 161 88.8
BcaB07g32486 Brassica carinata HOM05D005954 ORTHO05D007347 7.2e-60 234.2 164 87.8
Aa31LG5G21180 Aethionema arabicum HOM05D005954 ORTHO05D007347 6.3e-56 221.1 166 83.1
AL1G42790 Arabidopsis lyrata HOM05D005954 ORTHO05D007347 8.2e-56 220.7 163 84.0
C07p16610 Brassica napus HOM05D005954 ORTHO05D007347 8.2e-56 220.7 156 85.9
AT1G29070 Arabidopsis thaliana HOM05D005954 ORTHO05D007347 1.1e-55 220.3 163 84.0
Carub.0001s2727 Capsella rubella HOM05D005954 ORTHO05D007347 7.0e-55 217.6 163 84.0
CARHR028290 Cardamine hirsuta HOM05D005954 ORTHO05D007347 1.0e-53 213.8 165 84.8
BcaC05g26922 Brassica carinata HOM05D005954 ORTHO05D007347 1.7e-53 213.0 161 83.2
C05p27750 Brassica napus HOM05D005954 ORTHO05D007347 1.7e-53 213.0 161 83.2
BolC5t31496H Brassica oleracea HOM05D005954 ORTHO05D007347 1.7e-53 213.0 161 83.2
THA.LOC104820590 Tarenaya hassleriana HOM05D005954 ORTHO05D007347 5.0e-45 184.9 163 70.6
BcaC06g35397 Brassica carinata HOM05D005954 ORTHO05D007347 6.5e-45 184.5 156 76.3
Gorai.009G163700 Gossypium raimondii HOM05D005954 ORTHO05D007347 3.0e-34 149.1 138 70.3
Gohir.D05G158700 Gossypium hirsutum HOM05D005954 ORTHO05D007347 5.2e-34 148.3 138 69.6
PGR004G0539 Punica granatum HOM05D005954 ORTHO05D007347 8.8e-34 147.5 164 64.6
PGR004G0737 Punica granatum HOM05D005954 ORTHO05D007347 8.8e-34 147.5 164 64.6
MELO3C007218.2 Cucumis melo HOM05D005954 ORTHO05D007347 2.0e-33 146.4 157 66.9
Thecc.06G173000 Theobroma cacao HOM05D005954 ORTHO05D007347 2.6e-33 146.0 140 67.9
Gohir.A05G156000 Gossypium hirsutum HOM05D005954 ORTHO05D007347 3.4e-33 145.6 138 69.6
Gohir.D06G136500 Gossypium hirsutum HOM05D005954 ORTHO05D007347 5.7e-33 144.8 137 68.6
Gohir.A06G134004 Gossypium hirsutum HOM05D005954 ORTHO05D007347 9.8e-33 144.1 151 64.9
Gorai.010G158700 Gossypium raimondii HOM05D005954 ORTHO05D007347 9.8e-33 144.1 137 68.6
CsaV3_6G050830 Cucumis sativus L. HOM05D005954 ORTHO05D007347 2.2e-32 142.9 157 66.9
Ciclev10017015m.g Citrus clementina HOM05D005954 ORTHO05D007347 2.8e-32 142.5 162 58.0
Manes.17G054200 Manihot esculenta HOM05D005954 ORTHO05D007347 6.3e-32 141.4 134 68.7
Dinv04624 Davidia involucrata HOM05D005954 ORTHO05D007347 8.3e-32 141.0 138 67.4
Cpa.g.sc7.59 Carica papaya HOM05D005954 ORTHO05D007347 1.1e-31 140.6 167 60.5
MSTRG.14726 Avicennia marina HOM05D005954 ORTHO05D007347 1.4e-31 140.2 158 63.9
Cc02_g14660 Coffea canephora HOM05D005954 ORTHO05D007347 1.8e-31 139.8 145 65.5
Manes.16G037400 Manihot esculenta HOM05D005954 ORTHO05D007347 1.8e-31 139.8 134 66.4
ClCG01G023670 Citrullus lanatus HOM05D005954 ORTHO05D007347 3.1e-31 139.0 157 65.0
Atru.chr10.1690 Acer truncatum HOM05D005954 ORTHO05D007347 4.1e-31 138.7 164 60.4
PGSC0003DMG400021493 Solanum tuberosum HOM05D005954 ORTHO05D007347 5.4e-31 138.3 169 60.4
Duzib160G0806 Durio zibethinus HOM05D005954 ORTHO05D007347 7.0e-31 137.9 138 66.7
MD10G1282300 Malus domestica HOM05D005954 ORTHO05D007347 1.2e-30 137.1 156 62.8
Potri.011G064800 Populus trichocarpa HOM05D005954 ORTHO05D007347 1.6e-30 136.7 158 63.9
Nn1g09054 Nelumbo nucifera HOM05D005954 ORTHO05D007347 2.0e-30 136.3 160 60.0
Solyc01g056780.3 Solanum lycopersicum HOM05D005954 ORTHO05D007347 2.0e-30 136.3 141 66.0
Sopen01g025250 Solanum pennellii HOM05D005954 ORTHO05D007347 2.0e-30 136.3 142 64.8
Sed0006910 Sechium edule HOM05D005954 ORTHO05D007347 2.7e-30 136.0 139 66.2
Nitab4.5_0000117g0150 Nicotiana tabacum HOM05D005954 ORTHO05D007347 4.5e-30 135.2 148 64.2
AUR62036591 Chenopodium quinoa HOM05D005954 ORTHO05D007347 1.0e-29 134.0 133 66.2
Peaxi162Scf00061g00155 Petunia axillaris HOM05D005954 ORTHO05D007347 1.0e-29 134.0 158 58.9
Prupe.4G059500 Prunus persica HOM05D005954 ORTHO05D007347 2.9e-29 132.5 156 60.3
Nitab4.5_0004274g0040 Nicotiana tabacum HOM05D005954 ORTHO05D007347 3.8e-29 132.1 171 58.5
CSS0014251 Camellia sinensis var. sinensis HOM05D005954 ORTHO05D007347 5.0e-29 131.7 142 62.0
TWI38G2142 Tripterygium wilfordii HOM05D005954 ORTHO05D007347 6.6e-29 131.3 132 64.4
Ah.09g233660 Amaranthus hybridus HOM05D005954 ORTHO05D007347 8.6e-29 131.0 133 64.7
HanXRQChr04g0116001 Helianthus annuus HOM05D005954 ORTHO05D007347 1.1e-28 130.6 144 63.9
Eucgr.D00519 Eucalyptus grandis HOM05D005954 ORTHO05D007347 1.9e-28 129.8 164 61.0
CANSAT11G0094 Cannabis sativa HOM05D005954 ORTHO05D007347 3.3e-28 129.0 165 58.8
SalBow8G3893 Salvia bowleyana HOM05D005954 ORTHO05D007347 3.3e-28 129.0 156 61.5
DCAR_007962 Daucus carota HOM05D005954 ORTHO05D007347 4.2e-28 128.6 134 62.7
PSO541G3988 Papaver somniferum HOM05D005954 ORTHO05D007347 4.2e-28 128.6 160 56.9
GSVIVG01021193001 Vitis vinifera HOM05D005954 ORTHO05D007347 4.2e-28 128.6 110 73.6
Haze_06257 Corylus avellana HOM05D005954 ORTHO05D007347 5.5e-28 128.3 167 58.1
Migut.H01450 Erythranthe guttata HOM05D005954 ORTHO05D007347 7.2e-28 127.9 139 63.3
FAN21G0082 Fragaria x ananassa HOM05D005954 ORTHO05D007347 7.2e-28 127.9 137 65.7
FvH4_3g07980 Fragaria vesca HOM05D005954 ORTHO05D007347 1.6e-27 126.7 137 65.0
FAN16G0914 Fragaria x ananassa HOM05D005954 ORTHO05D007347 1.6e-27 126.7 137 65.0
AUR62031174 Chenopodium quinoa HOM05D005954 ORTHO05D007347 2.8e-27 125.9 133 63.9
TAR626G1287 Trochodendron aralioides HOM05D005954 ORTHO05D007347 2.8e-27 125.9 161 58.4
PSO675G5672 Papaver somniferum HOM05D005954 ORTHO05D007347 3.6e-27 125.6 160 55.6
RcHm_v2.0_Chr5g0010351 Rosa chinensis HOM05D005954 ORTHO05D007347 1.0e-26 124.0 137 64.2
Lsat_1_v5_gn_7_23061 Lactuca sativa HOM05D005954 ORTHO05D007347 1.8e-26 123.2 147 63.3
CDE05G1458 Ceratophyllum demersum HOM05D005954 ORTHO05D007347 3.0e-26 122.5 136 64.0
Sabra11G0046600 Salix brachista HOM05D005954 ORTHO05D007347 4.0e-26 122.1 199 50.8
Hund23979 Selenicereus undatus HOM05D005954 ORTHO05D007347 6.8e-26 121.3 142 59.2
FAN11G0799 Fragaria x ananassa HOM05D005954 ORTHO05D007347 2.0e-25 119.8 137 63.5
EL10Ac8g20509 Beta vulgaris HOM05D005954 ORTHO05D007347 2.6e-25 119.4 162 56.2
MD05G1303200 Malus domestica HOM05D005954 ORTHO05D007347 3.4e-25 119.0 157 59.9
ECA236G0551 Erigeron canadensis HOM05D005954 ORTHO05D007347 7.5e-25 117.9 165 54.5
SGA_v2.0_scaffold1G00032 Striga asiatica HOM05D005954 ORTHO05D007347 2.2e-24 116.3 162 56.8
QL05p046336 Quercus lobata HOM05D005954 ORTHO05D007347 2.8e-24 115.9 163 55.2
unitig_22.g6753 Utricularia gibba HOM05D005954 ORTHO05D007347 3.7e-24 115.5 152 55.9
arahy.Tifrunner.gnm1.ann1.N07IEU Arachis hypogaea HOM05D005954 ORTHO05D007347 1.1e-23 114.0 171 54.4
Oeu001090.1 Olea europaea HOM05D005954 ORTHO05D007347 1.1e-23 114.0 108 66.7
COL.COLO4_31320 Corchorus olitorius HOM05D005954 ORTHO05D007347 1.4e-23 113.6 75 81.3
CAN.G889.12 Capsicum annuum HOM05D005954 ORTHO05D007347 2.4e-23 112.8 158 57.0
Lj6g0020578 Lotus japonicus HOM05D005954 ORTHO05D007347 4.1e-23 112.1 137 61.3
MD16G1032000 Malus domestica HOM05D005954 ORTHO05D007347 4.1e-23 112.1 140 57.1
Phvul.006G176900 Phaseolus vulgaris HOM05D005954 ORTHO05D007347 5.4e-23 111.7 163 53.4
Phvul.006G176980 Phaseolus vulgaris HOM05D005954 ORTHO05D007347 5.4e-23 111.7 163 53.4
CiPaw.09G068600 Carya illinoinensis HOM05D005954 ORTHO05D007347 7.0e-23 111.3 169 53.3
Cfa000593 Carpinus fangiana HOM05D005954 ORTHO05D007347 9.2e-23 110.9 165 52.7
Glyma.13G230600 Glycine max HOM05D005954 ORTHO05D007347 1.2e-22 110.5 165 55.2
CDE02G3841 Ceratophyllum demersum HOM05D005954 ORTHO05D009675 1.6e-22 110.2 109 68.8
Glyma.15G082000 Glycine max HOM05D005954 ORTHO05D007347 2.7e-22 109.4 163 54.6
TPR.G11659 Trifolium pratense HOM05D005954 ORTHO05D007347 2.7e-22 109.4 163 53.4
Atru.chr10.1684 Acer truncatum HOM05D005954 ORTHO05D007347 1.3e-21 107.1 72 79.2
arahy.Tifrunner.gnm1.ann1.YBYE48 Arachis hypogaea HOM05D005954 ORTHO05D007347 2.3e-21 106.3 146 58.9
Aqoxy1G03187 Aquilegia oxysepala HOM05D005954 ORTHO05D007347 5.0e-21 105.1 109 63.3
Lj1P1194T69 Lonicera japonica HOM05D005954 ORTHO05D007347 2.5e-20 102.8 88 68.2
MD10G1067400 Malus domestica HOM05D005954 ORTHO05D007347 3.3e-20 102.4 138 55.1
arahy.Tifrunner.gnm1.ann1.69550A Arachis hypogaea HOM05D005954 ORTHO05D007347 4.3e-20 102.1 158 55.1
Sc05g0007180 Simmondsia chinensis HOM05D005954 ORTHO05D007347 9.5e-20 100.9 73 75.3
Medtr2g015790 Medicago truncatula HOM05D005954 ORTHO05D007347 2.1e-19 99.8 163 49.7
CARHR028330 Cardamine hirsuta HOM05D005954 ORTHO05D007347 6.1e-19 98.2 59 89.8
Psat1g199440 Pisum sativum HOM05D005954 ORTHO05D007347 6.1e-19 98.2 164 51.2
ATR0602G014 Amborella trichopoda HOM05D005954 ORTHO05D007347 8.0e-19 97.8 134 55.2
Lalb_Chr20g0121221 Lupinus albus HOM05D005954 ORTHO05D007347 8.0e-19 97.8 66 81.8
MBI13_g00561_MAGBIO Magnolia biondii HOM05D005954 ORTHO05D007347 8.0e-19 97.8 168 51.2
HPP92_016045 Vanilla planifolia HOM05D005954 ORTHO05D007347 2.3e-18 96.3 95 64.2
vmacro01548 Vaccinium macrocarpon HOM05D005954 ORTHO05D007347 5.2e-18 95.1 143 51.7
Rhsim13G0191500 Rhododendron simsii HOM05D005954 ORTHO05D007347 1.5e-17 93.6 143 51.7
Zm00001eb150530 Zea mays HOM05D005954 ORTHO05D007347 7.5e-17 91.3 100 56.0
Ca_00467_v3 Cicer arietinum L. HOM05D005954 ORTHO05D007347 4.9e-16 88.6 90 62.2
Ca_30955_v3 Cicer arietinum L. HOM05D005954 ORTHO05D007347 4.9e-16 88.6 90 62.2
Os01g0805000 Oryza sativa ssp. japonica HOM05D005954 ORTHO05D007347 2.0e-14 83.2 160 43.8
MD16G1032400 Malus domestica HOM05D005954 ORTHO05D007347 2.7e-14 82.8 119 53.8
BolC7t42159H Brassica oleracea HOM05D003540 ORTHO05D004012 1.7e-13 80.1 69 78.3
Pp3c18_19220 Physcomitrium patens HOM05D005954 ORTHO05D007347 1.1e-12 77.4 134 49.3
MD16G1032600 Malus domestica HOM05D005954 ORTHO05D007347 9.5e-12 74.3 125 51.2
CBR_g29683 Chara braunii HOM05D005954 ORTHO05D007347 1.2e-11 73.9 73 57.5
Pp3c21_6450 Physcomitrium patens HOM05D005954 ORTHO05D007347 5.2e-10 68.6 134 46.3
SEGI_22528 Sequoiadendron giganteum HOM05D005954 ORTHO05D007347 6.8e-10 68.2 99 50.5
Mapoly0043s0046 Marchantia polymorpha HOM05D005954 ORTHO05D007347 3.4e-09 65.9 117 50.4
AagrBONN_evm.TU.Sc2ySwM_117.1983 Anthoceros agrestis HOM05D005954 ORTHO05D007347 1.3e-08 63.9 144 45.1


User provided reference genes

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