Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC01g00010 Brassica carinata HOM05D010217 ORTHO05D014062 1.2e-68 263.1 141 100.0
C03p74780 Brassica napus HOM05D010217 ORTHO05D014062 1.2e-68 263.1 141 100.0
BolC3t19727H Brassica oleracea HOM05D010217 ORTHO05D014062 2.4e-67 258.8 141 97.9
BraA08t34539Z Brassica rapa HOM05D010217 ORTHO05D014062 6.9e-59 230.7 141 90.8
BcaB03g12131 Brassica carinata HOM05D010217 ORTHO05D014062 4.9e-57 224.6 139 84.2
BcaB03g12132 Brassica carinata HOM05D010217 ORTHO05D014062 4.9e-57 224.6 139 84.2
A08p25840 Brassica napus HOM05D010217 ORTHO05D014062 3.9e-54 214.9 131 90.1
C03p36360 Brassica napus HOM05D010217 ORTHO05D014062 8.2e-28 127.5 138 50.7
BolC3t15950H Brassica oleracea HOM05D010217 ORTHO05D014062 8.2e-28 127.5 138 50.7
BcaB01g02581 Brassica carinata HOM05D010217 ORTHO05D014062 1.4e-27 126.7 138 51.4
Carub.0001s0277 Capsella rubella HOM05D010217 ORTHO05D014062 1.8e-27 126.3 139 51.8
BraA03t12198Z Brassica rapa HOM05D010217 ORTHO05D014062 1.5e-26 123.2 138 48.6
A03p30150 Brassica napus HOM05D010217 ORTHO05D014062 2.6e-26 122.5 137 51.8
Sp6g04300 Schrenkiella parvula HOM05D010217 ORTHO05D014062 4.5e-26 121.7 137 54.7
AT1G03660 Arabidopsis thaliana HOM05D010217 ORTHO05D014062 8.2e-20 100.9 100 56.0
C08p52710 Brassica napus HOM05D010217 ORTHO05D027043 1.1e-16 90.5 138 42.0
Sp6g04290 Schrenkiella parvula HOM05D000264 ORTHO05D000152 1.1e-16 90.5 113 49.6
BcaC07g42235 Brassica carinata HOM05D010217 ORTHO05D027043 1.4e-16 90.1 138 42.8
BcaC07g42240 Brassica carinata HOM05D010217 ORTHO05D027043 3.2e-16 89.0 138 42.8
BolC8t52797H Brassica oleracea HOM05D010217 ORTHO05D027043 3.2e-16 89.0 138 42.8
Thhalv10002443m.g Eutrema salsugineum HOM05D000264 ORTHO05D000152 2.2e-12 76.3 133 39.8
A09p68260 Brassica napus HOM05D000803 ORTHO05D001162 3.1e-11 72.4 120 41.7
C08p52720 Brassica napus HOM05D010217 ORTHO05D028134 1.2e-10 70.5 96 46.9
BolC8t52798H Brassica oleracea HOM05D010217 ORTHO05D028134 1.2e-10 70.5 96 46.9
A02p13600 Brassica napus HOM05D000264 ORTHO05D000152 2.6e-10 69.3 113 42.5
C02p21940 Brassica napus HOM05D000264 ORTHO05D000152 2.6e-10 69.3 113 42.5
BraA02t06419Z Brassica rapa HOM05D000264 ORTHO05D000152 2.6e-10 69.3 113 42.5
BcaC03g14743 Brassica carinata HOM05D000264 ORTHO05D000152 7.7e-10 67.8 113 41.6
AT1G03670 Arabidopsis thaliana HOM05D000264 ORTHO05D000152 1.3e-09 67.0 130 38.5
BraA09t42162Z Brassica rapa HOM05D010217 ORTHO05D028134 1.3e-09 67.0 96 43.8
A09p68270 Brassica napus HOM05D010217 ORTHO05D028134 2.2e-09 66.2 96 43.8
BcaB01g02537 Brassica carinata HOM05D000264 ORTHO05D000152 1.6e-07 60.1 129 33.3
Cc05_g06990 Coffea canephora HOM05D000264 ORTHO05D000152 1.6e-07 60.1 125 32.0
GSVIVG01020530001 Vitis vinifera HOM05D000264 ORTHO05D000152 2.1e-07 59.7 135 37.0
BcaC01g06675 Brassica carinata HOM05D000264 ORTHO05D000152 2.7e-07 59.3 120 37.5
C03p36730 Brassica napus HOM05D000264 ORTHO05D000152 2.7e-07 59.3 120 37.5
BolC3t15987H Brassica oleracea HOM05D000264 ORTHO05D000152 2.7e-07 59.3 120 37.5
GSVIVG01030372001 Vitis vinifera HOM05D000264 ORTHO05D000152 4.7e-07 58.5 114 34.2
BraA03t12224Z Brassica rapa HOM05D000264 ORTHO05D000152 6.1e-07 58.2 120 36.7
Dinv02172 Davidia involucrata HOM05D000264 ORTHO05D000152 6.1e-07 58.2 130 36.2
TAR624G1302 Trochodendron aralioides HOM05D000264 ORTHO05D000152 6.1e-07 58.2 137 32.1
Rhsim06G0144100 Rhododendron simsii HOM05D000264 ORTHO05D000152 8.0e-07 57.8 120 33.3
vmacro12289 Vaccinium macrocarpon HOM05D000264 ORTHO05D000152 8.0e-07 57.8 126 30.2
vmacro22811 Vaccinium macrocarpon HOM05D000264 ORTHO05D000152 8.0e-07 57.8 126 30.2
Rhsim06G0144200 Rhododendron simsii HOM05D000264 ORTHO05D000152 1.0e-06 57.4 115 33.9
Rhsim06G0145000 Rhododendron simsii HOM05D000264 ORTHO05D000152 1.0e-06 57.4 115 33.9
CARHR002990 Cardamine hirsuta HOM05D000264 ORTHO05D000152 1.4e-06 57.0 141 35.5
EL10Ac4g07662 Beta vulgaris HOM05D000264 ORTHO05D000152 1.8e-06 56.6 136 29.4
BraA09t42161Z Brassica rapa HOM05D000803 ORTHO05D001162 1.8e-06 56.6 78 41.0
Hma1.2p1_0213F.1_g090350 Hydrangea macrophylla HOM05D000264 ORTHO05D000152 1.8e-06 56.6 122 35.2
AT4G03460 Arabidopsis thaliana HOM05D000264 ORTHO05D000152 2.3e-06 56.2 120 36.7
CARHR251900 Cardamine hirsuta HOM05D000264 ORTHO05D000001 2.3e-06 56.2 119 35.3
Cc05_g07000 Coffea canephora HOM05D000264 ORTHO05D000152 2.3e-06 56.2 133 32.3
Dinv26423 Davidia involucrata HOM05D000264 ORTHO05D000152 2.3e-06 56.2 120 32.5
vmacro12293 Vaccinium macrocarpon HOM05D000264 ORTHO05D000152 2.3e-06 56.2 126 33.3
AT4G03500 Arabidopsis thaliana HOM05D000264 ORTHO05D000152 3.0e-06 55.8 120 35.8
CSS0000780 Camellia sinensis var. sinensis HOM05D000264 ORTHO05D000152 3.0e-06 55.8 117 37.6
CSS0018607 Camellia sinensis var. sinensis HOM05D000264 ORTHO05D000152 3.0e-06 55.8 117 37.6
Carub.0006s3361 Capsella rubella HOM05D000264 ORTHO05D000152 3.0e-06 55.8 120 36.7
Dinv23656 Davidia involucrata HOM05D000264 ORTHO05D000152 3.0e-06 55.8 120 37.5
Migut.H01079 Erythranthe guttata HOM05D000264 ORTHO05D000152 3.0e-06 55.8 126 32.5
Carub.0008s1779 Capsella rubella HOM05D000264 ORTHO05D000152 4.0e-06 55.5 113 38.1
vmacro12290 Vaccinium macrocarpon HOM05D000264 ORTHO05D000152 4.0e-06 55.5 121 33.9
vmacro22812 Vaccinium macrocarpon HOM05D000264 ORTHO05D000152 4.0e-06 55.5 121 33.9
Actinidia11041 Actinidia chinensis HOM05D000264 ORTHO05D000152 5.2e-06 55.1 118 34.7
Migut.D00741 Erythranthe guttata HOM05D000264 ORTHO05D000152 5.2e-06 55.1 127 38.6
Actinidia11042 Actinidia chinensis HOM05D000264 ORTHO05D000152 6.7e-06 54.7 118 34.7
Eucgr.K00980 Eucalyptus grandis HOM05D000264 ORTHO05D000152 6.7e-06 54.7 108 36.1


User provided reference genes

Program Settings