Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C03p74720 Brassica napus HOM05D003968 ORTHO05D004077 1.1e-82 310.1 179 100.0
BcaC01g00004 Brassica carinata HOM05D003968 ORTHO05D004077 3.0e-75 285.4 179 92.7
BolC3t19720H Brassica oleracea HOM05D003968 ORTHO05D004077 1.1e-72 276.9 179 90.5
A08p25930 Brassica napus HOM05D003968 ORTHO05D004077 1.8e-72 276.2 179 88.3
BraA08t34544Z Brassica rapa HOM05D003968 ORTHO05D004077 9.6e-66 253.8 179 82.7
Sp1g24250 Schrenkiella parvula HOM05D003968 ORTHO05D004077 5.3e-56 221.5 180 77.2
A07p11490 Brassica napus HOM05D003968 ORTHO05D004077 7.9e-52 207.6 170 64.7
BraA07t28938Z Brassica rapa HOM05D003968 ORTHO05D004077 7.9e-52 207.6 170 64.7
BcaB03g13960 Brassica carinata HOM05D003968 ORTHO05D004077 2.3e-51 206.1 169 64.5
BcaC06g35328 Brassica carinata HOM05D003968 ORTHO05D004077 2.6e-47 192.6 170 62.4
C07p17340 Brassica napus HOM05D003968 ORTHO05D004077 2.6e-47 192.6 170 62.4
BolC7t42238H Brassica oleracea HOM05D003968 ORTHO05D004077 2.6e-47 192.6 170 62.4
Thhalv10008849m.g Eutrema salsugineum HOM05D003968 ORTHO05D004077 4.5e-47 191.8 193 68.9
Carub.0001s2650 Capsella rubella HOM05D003968 ORTHO05D004077 1.1e-42 177.2 180 66.7
CARHR027520 Cardamine hirsuta HOM05D003968 ORTHO05D004077 1.5e-42 176.8 180 68.9
AT1G28070 Arabidopsis thaliana HOM05D003968 ORTHO05D004077 2.2e-41 172.9 181 65.2
BcaB02g10569 Brassica carinata HOM05D003968 ORTHO05D004077 1.0e-38 164.1 198 60.6
THA.LOC104814203 Tarenaya hassleriana HOM05D003968 ORTHO05D004077 1.7e-38 163.3 188 62.2
Thhalv10017284m.g Eutrema salsugineum HOM05D003968 ORTHO05D004077 5.0e-38 161.8 185 61.1
A05p12030 Brassica napus HOM05D003968 ORTHO05D004077 1.4e-37 160.2 196 60.2
CARHR127520 Cardamine hirsuta HOM05D003968 ORTHO05D004077 1.2e-36 157.1 182 61.0
BcaC02g07799 Brassica carinata HOM05D003968 ORTHO05D004077 2.1e-36 156.4 198 57.6
BcaC05g26810 Brassica carinata HOM05D003968 ORTHO05D004077 2.1e-36 156.4 166 56.0
C04p63030 Brassica napus HOM05D003968 ORTHO05D004077 2.1e-36 156.4 198 58.6
AL4G29180 Arabidopsis lyrata HOM05D003968 ORTHO05D004077 2.7e-36 156.0 183 61.2
BcaC02g11436 Brassica carinata HOM05D003968 ORTHO05D004077 3.6e-36 155.6 203 57.6
C04p15610 Brassica napus HOM05D003968 ORTHO05D004077 3.6e-36 155.6 203 57.6
A04p25820 Brassica napus HOM05D003968 ORTHO05D004077 6.1e-36 154.8 193 58.0
Sp4g15850 Schrenkiella parvula HOM05D003968 ORTHO05D004077 7.9e-36 154.5 190 61.6
THA.LOC104820530 Tarenaya hassleriana HOM05D003968 ORTHO05D004077 3.0e-35 152.5 185 53.5
Aa31LG9G13440 Aethionema arabicum HOM05D003968 ORTHO05D004077 3.9e-35 152.1 171 65.5
Aa31sc415G10 Aethionema arabicum HOM05D003968 ORTHO05D004077 8.8e-35 151.0 189 58.2
BraA05t20145Z Brassica rapa HOM05D003968 ORTHO05D004077 1.1e-34 150.6 210 57.1
BcaC01g05837 Brassica carinata HOM05D003968 ORTHO05D004077 4.4e-34 148.7 183 57.9
AT2G33510 Arabidopsis thaliana HOM05D003968 ORTHO05D004077 9.7e-34 147.5 188 58.5
BcaB06g28694 Brassica carinata HOM05D003968 ORTHO05D004077 1.3e-33 147.1 205 53.7
BolC4t27780H Brassica oleracea HOM05D003968 ORTHO05D004077 1.3e-33 147.1 211 55.0
QL03p050330 Quercus lobata HOM05D003968 ORTHO05D004077 1.4e-32 143.7 185 45.4
A03p18770 Brassica napus HOM05D003968 ORTHO05D004077 4.1e-32 142.1 175 58.9
BolC4t23129H Brassica oleracea HOM05D003968 ORTHO05D004077 7.0e-32 141.4 216 53.2
BraA03t11137Z Brassica rapa HOM05D003968 ORTHO05D004077 1.5e-31 140.2 175 58.3
CiPaw.06G107600 Carya illinoinensis HOM05D003968 ORTHO05D004077 2.0e-31 139.8 184 48.9
A09p38020 Brassica napus HOM05D003968 ORTHO05D004077 2.6e-31 139.4 166 61.4
BraA09t39312Z Brassica rapa HOM05D003968 ORTHO05D004077 2.6e-31 139.4 166 61.4
C03p21930 Brassica napus HOM05D003968 ORTHO05D004077 3.5e-31 139.0 175 57.1
Cfa009411 Carpinus fangiana HOM05D003968 ORTHO05D004077 5.9e-31 138.3 186 48.4
BcaB01g03931 Brassica carinata HOM05D003968 ORTHO05D004077 7.7e-31 137.9 175 57.7
Haze_12469 Corylus avellana HOM05D003968 ORTHO05D004077 1.3e-30 137.1 182 46.7
BraA04t18084Z Brassica rapa HOM05D003968 ORTHO05D004077 2.9e-30 136.0 206 52.9
Carub.0004s1514 Capsella rubella HOM05D003968 ORTHO05D004077 1.1e-29 134.0 194 54.6
CiPaw.05G103900 Carya illinoinensis HOM05D003968 ORTHO05D004077 1.5e-29 133.7 185 45.9
Nitab4.5_0007554g0020 Nicotiana tabacum HOM05D003968 ORTHO05D004077 3.2e-29 132.5 190 41.1
GSVIVG01000957001 Vitis vinifera HOM05D003968 ORTHO05D004077 7.2e-29 131.3 197 50.8
THA.LOC104812600 Tarenaya hassleriana HOM05D003968 ORTHO05D004077 1.6e-28 130.2 186 53.2
BcaC05g26624 Brassica carinata HOM05D003968 ORTHO05D004077 3.6e-28 129.0 166 58.4
C05p26740 Brassica napus HOM05D003968 ORTHO05D004077 3.6e-28 129.0 166 58.4
VMungo1383G2332 Vigna mungo HOM05D003968 ORTHO05D004077 2.3e-27 126.3 196 42.9
Manes.08G103100 Manihot esculenta HOM05D003968 ORTHO05D004077 3.0e-27 125.9 198 46.5
Duzib251G0690 Durio zibethinus HOM05D003968 ORTHO05D004077 5.2e-27 125.2 202 44.6
CSS0002178 Camellia sinensis var. sinensis HOM05D003968 ORTHO05D004077 6.7e-27 124.8 181 50.8
Oeu003280.1 Olea europaea HOM05D003968 ORTHO05D004077 6.7e-27 124.8 192 41.7
Phvul.008G000400 Phaseolus vulgaris HOM05D003968 ORTHO05D004077 1.5e-26 123.6 198 41.9
Manes.09G185900 Manihot esculenta HOM05D003968 ORTHO05D004077 3.3e-26 122.5 213 43.7
Potri.003G165800 Populus trichocarpa HOM05D003968 ORTHO05D004077 5.7e-26 121.7 185 44.9
Duzib248G0844 Durio zibethinus HOM05D003968 ORTHO05D004077 7.4e-26 121.3 193 39.9
Peaxi162Scf00128g01760 Petunia axillaris HOM05D003968 ORTHO05D004077 7.4e-26 121.3 197 40.1
Actinidia30604 Actinidia chinensis HOM05D003968 ORTHO05D004077 1.3e-25 120.6 184 41.8
TWI75G0242 Tripterygium wilfordii HOM05D003968 ORTHO05D004077 1.3e-25 120.6 191 47.6
Duzib052G1223 Durio zibethinus HOM05D003968 ORTHO05D004077 1.7e-25 120.2 202 43.6
TWI36G1280 Tripterygium wilfordii HOM05D003968 ORTHO05D004077 2.2e-25 119.8 201 38.3
Thecc.02G196200 Theobroma cacao HOM05D003968 ORTHO05D004077 3.7e-25 119.0 199 45.2
PGR057G0001 Punica granatum HOM05D003968 ORTHO05D004077 1.4e-24 117.1 185 43.2
PGR119G2322 Punica granatum HOM05D003968 ORTHO05D004077 1.4e-24 117.1 185 43.2
arahy.Tifrunner.gnm1.ann1.25I2B1 Arachis hypogaea HOM05D003968 ORTHO05D004077 3.1e-24 115.9 215 42.8
arahy.Tifrunner.gnm1.ann1.GKU1A2 Arachis hypogaea HOM05D003968 ORTHO05D004077 3.1e-24 115.9 215 42.8
Lj1g0012774 Lotus japonicus HOM05D003968 ORTHO05D004077 4.1e-24 115.5 196 38.3
Potri.001G062000 Populus trichocarpa HOM05D003968 ORTHO05D004077 4.1e-24 115.5 189 44.4
TWI18G0914 Tripterygium wilfordii HOM05D003968 ORTHO05D004077 4.1e-24 115.5 202 42.6
Ciclev10032280m.g Citrus clementina HOM05D003968 ORTHO05D004077 5.3e-24 115.2 192 49.5
Glyma.18G302000 Glycine max HOM05D003968 ORTHO05D004077 9.1e-24 114.4 199 41.7
Prupe.1G219000 Prunus persica HOM05D003968 ORTHO05D004077 9.1e-24 114.4 151 54.3
Sabra03G0121000 Salix brachista HOM05D003968 ORTHO05D004077 9.1e-24 114.4 190 42.6
Gohir.D12G145000 Gossypium hirsutum HOM05D003968 ORTHO05D004077 1.2e-23 114.0 197 41.6
MD13G1126400 Malus domestica HOM05D003968 ORTHO05D004077 1.2e-23 114.0 202 48.5
Gorai.008G156400 Gossypium raimondii HOM05D003968 ORTHO05D004077 1.6e-23 113.6 199 41.2
Lalb_Chr14g0375131 Lupinus albus HOM05D003968 ORTHO05D004077 1.6e-23 113.6 184 50.5
Gohir.A12G140400 Gossypium hirsutum HOM05D003968 ORTHO05D004077 2.0e-23 113.2 200 40.5
Nitab4.5_0001600g0080 Nicotiana tabacum HOM05D003968 ORTHO05D004077 2.0e-23 113.2 174 41.4
vmacro22632 Vaccinium macrocarpon HOM05D003968 ORTHO05D004077 2.0e-23 113.2 197 48.7
Peaxi162Scf00758g00054 Petunia axillaris HOM05D003968 ORTHO05D004077 2.6e-23 112.8 193 49.2
RcHm_v2.0_Chr4g0429341 Rosa chinensis HOM05D003968 ORTHO05D004077 2.6e-23 112.8 210 43.3
BolC5t31398H Brassica oleracea HOM05D003968 ORTHO05D004077 3.5e-23 112.5 166 56.6
TAR629G0662 Trochodendron aralioides HOM05D003968 ORTHO05D004077 3.5e-23 112.5 182 47.3
Dinv17895 Davidia involucrata HOM05D003968 ORTHO05D004077 4.5e-23 112.1 185 49.2
MD16G1126900 Malus domestica HOM05D003968 ORTHO05D004077 4.5e-23 112.1 210 44.3
Sabra01G0044600 Salix brachista HOM05D003968 ORTHO05D004077 4.5e-23 112.1 189 41.8
MSTRG.8041 Avicennia marina HOM05D003968 ORTHO05D004077 7.7e-23 111.3 197 41.1
Cpa.g.sc123.52 Carica papaya HOM05D003968 ORTHO05D004077 1.0e-22 110.9 139 48.2
FvH4_4g23070 Fragaria vesca HOM05D003968 ORTHO05D004077 1.3e-22 110.5 214 43.5
FAN12G2512 Fragaria x ananassa HOM05D003968 ORTHO05D004077 3.8e-22 109.0 213 41.3
SalBow2G1659 Salvia bowleyana HOM05D003968 ORTHO05D004077 3.8e-22 109.0 204 44.6
Eucgr.H03380 Eucalyptus grandis HOM05D003968 ORTHO05D004077 6.5e-22 108.2 197 41.1
Hma1.2p1_0459F.1_g157230 Hydrangea macrophylla HOM05D003968 ORTHO05D004077 6.5e-22 108.2 201 43.8
COL.COLO4_11740 Corchorus olitorius HOM05D003968 ORTHO05D004077 8.5e-22 107.8 209 38.8
Sed0024018 Sechium edule HOM05D003968 ORTHO05D004077 1.5e-21 107.1 191 46.6
CSS0023603 Camellia sinensis var. sinensis HOM05D003968 ORTHO05D004077 2.5e-21 106.3 182 39.0
CDE02G3264 Ceratophyllum demersum HOM05D003278 ORTHO05D003738 2.5e-21 106.3 177 41.8
MSTRG.468 Avicennia marina HOM05D003968 ORTHO05D004077 3.2e-21 105.9 204 43.1
CAN.G1277.6 Capsicum annuum HOM05D003968 ORTHO05D004077 3.2e-21 105.9 188 37.8
Migut.K01036 Erythranthe guttata HOM05D003968 ORTHO05D004077 4.2e-21 105.5 205 42.4
Sc11g0000210 Simmondsia chinensis HOM05D003968 ORTHO05D004077 4.2e-21 105.5 223 34.1
Actinidia22131 Actinidia chinensis HOM05D003968 ORTHO05D004077 7.2e-21 104.8 191 49.2
CDE06G0253 Ceratophyllum demersum HOM05D003968 ORTHO05D004077 7.2e-21 104.8 175 40.6
HanXRQChr08g0210131 Helianthus annuus HOM05D003968 ORTHO05D004077 9.4e-21 104.4 197 39.1
Psat0s2399g0040 Pisum sativum HOM05D003968 ORTHO05D004077 9.4e-21 104.4 135 43.7
Lj6C835T0 Lonicera japonica HOM05D003968 ORTHO05D004077 1.6e-20 103.6 177 46.3
Lalb_Chr04g0257091 Lupinus albus HOM05D003968 ORTHO05D004077 1.6e-20 103.6 192 46.9
MELO3C022347.2 Cucumis melo HOM05D003968 ORTHO05D004077 8.0e-20 101.3 199 40.2
Medtr7g005500 Medicago truncatula HOM05D003968 ORTHO05D004077 8.0e-20 101.3 199 37.2
PSO229G0040 Papaver somniferum HOM05D003968 ORTHO05D004077 8.0e-20 101.3 170 42.4
MBI07_g37482_MAGBIO Magnolia biondii HOM05D003968 ORTHO05D004077 2.3e-19 99.8 171 36.3
ClCG07G011730 Citrullus lanatus HOM05D003968 ORTHO05D004077 4.0e-19 99.0 196 44.9
PSO478G1150 Papaver somniferum HOM05D003968 ORTHO05D004077 4.0e-19 99.0 196 46.9
Ah.02g131150 Amaranthus hybridus HOM05D003968 ORTHO05D004077 5.2e-19 98.6 223 33.2
PGSC0003DMG400030000 Solanum tuberosum HOM05D003968 ORTHO05D004077 5.2e-19 98.6 212 33.5
CsaV3_6G007850 Cucumis sativus L. HOM05D003968 ORTHO05D004077 6.8e-19 98.2 200 39.0
ECA233G5077 Erigeron canadensis HOM05D003968 ORTHO05D004077 1.2e-18 97.4 189 45.0
Nn4g22193 Nelumbo nucifera HOM05D003968 ORTHO05D004077 1.2e-18 97.4 190 34.7
Solyc01g009770.3 Solanum lycopersicum HOM05D003968 ORTHO05D004077 1.2e-18 97.4 204 33.8
TAR622G0782 Trochodendron aralioides HOM05D003968 ORTHO05D004077 1.2e-18 97.4 178 37.6
PSO017G3780 Papaver somniferum HOM05D003968 ORTHO05D004077 2.0e-18 96.7 196 46.4
unitig_747.g21116 Utricularia gibba HOM05D003968 ORTHO05D004077 2.0e-18 96.7 193 33.7
ClCG06G001810 Citrullus lanatus HOM05D003968 ORTHO05D004077 2.6e-18 96.3 192 39.1
Nn3g16325 Nelumbo nucifera HOM05D003968 ORTHO05D004077 2.6e-18 96.3 196 36.2
PSO675G4434 Papaver somniferum HOM05D003968 ORTHO05D004077 3.4e-18 95.9 172 43.0
Sopen01g005310 Solanum pennellii HOM05D003968 ORTHO05D004077 3.4e-18 95.9 212 33.0
FAN07G1723 Fragaria x ananassa HOM05D003968 ORTHO05D004077 4.4e-18 95.5 229 38.9
FAN17G1317 Fragaria x ananassa HOM05D003968 ORTHO05D004077 9.8e-18 94.4 240 38.3
MBI11_g37080_MAGBIO Magnolia biondii HOM05D003968 ORTHO05D004077 9.8e-18 94.4 140 47.1
unitig_26.g10423 Utricularia gibba HOM05D003968 ORTHO05D004077 9.8e-18 94.4 157 38.2
Atru.chr11.2403 Acer truncatum HOM05D003968 ORTHO05D004077 1.3e-17 94.0 212 37.7
Aqoxy5G03211 Aquilegia oxysepala HOM05D003968 ORTHO05D004077 2.2e-17 93.2 182 40.1
unitig_749.g13321 Utricularia gibba HOM05D003968 ORTHO05D004077 2.2e-17 93.2 183 37.2
ATR0582G076 Amborella trichopoda HOM05D003968 ORTHO05D004077 6.3e-17 91.7 177 35.0
Ah.03g135740 Amaranthus hybridus HOM05D003968 ORTHO05D004077 8.3e-17 91.3 232 31.0
Oeu019428.1 Olea europaea HOM05D003968 ORTHO05D004077 8.3e-17 91.3 187 31.0
HanXRQChr12g0362341 Helianthus annuus HOM05D003968 ORTHO05D004077 1.1e-16 90.9 178 41.0
Sed0012192 Sechium edule HOM05D003968 ORTHO05D004077 1.1e-16 90.9 129 57.4
TPR.G15634 Trifolium pratense HOM05D003968 ORTHO05D004077 1.1e-16 90.9 193 44.0
CSS0048086 Camellia sinensis var. sinensis HOM05D003968 ORTHO05D004077 1.4e-16 90.5 202 43.1
Lsat_1_v5_gn_4_1260 Lactuca sativa HOM05D003968 ORTHO05D004077 4.1e-16 89.0 180 46.1
Lsat_1_v5_gn_8_147160 Lactuca sativa HOM05D003968 ORTHO05D004077 2.0e-15 86.7 235 36.2
BcaC05g26622 Brassica carinata HOM05D003968 ORTHO05D004077 2.7e-15 86.3 141 53.2
CANSAT56G0023 Cannabis sativa HOM05D003968 ORTHO05D004077 2.7e-15 86.3 220 33.6
Hund25497 Selenicereus undatus HOM05D003968 ORTHO05D004077 2.7e-15 86.3 226 31.0
CsaV3_4G002470 Cucumis sativus L. HOM05D003968 ORTHO05D004077 4.5e-15 85.5 138 51.4
AL1G41580 Arabidopsis lyrata HOM05D003968 ORTHO05D004077 7.7e-15 84.7 103 68.9
DCAR_024638 Daucus carota HOM05D003968 ORTHO05D004077 1.7e-14 83.6 234 32.9
Cc11_g17440 Coffea canephora HOM05D003968 ORTHO05D004077 3.8e-14 82.4 230 32.6
MELO3C017796.2 Cucumis melo HOM05D003968 ORTHO05D004077 1.6e-12 77.0 154 46.8
HPP92_011550 Vanilla planifolia HOM05D003968 ORTHO05D004077 2.1e-12 76.6 157 30.6
Rhsim12G0020700 Rhododendron simsii HOM05D003968 ORTHO05D004077 1.5e-10 70.5 133 37.6
Gohir.D01G019600 Gossypium hirsutum HOM05D003968 ORTHO05D004077 2.8e-09 66.2 143 39.9
Gorai.002G022000 Gossypium raimondii HOM05D003968 ORTHO05D004077 6.3e-09 65.1 143 39.2
HPP92_023087 Vanilla planifolia HOM05D003968 ORTHO05D004077 6.3e-09 65.1 166 31.9
Gohir.A01G021200 Gossypium hirsutum HOM05D003968 ORTHO05D004077 2.4e-08 63.2 143 39.2
SGA_v2.0_scaffold80G25944 Striga asiatica HOM05D003968 ORTHO05D004077 2.4e-08 63.2 100 39.0
CDE09G1092 Ceratophyllum demersum HOM05D003968 ORTHO05D004077 5.4e-08 62.0 144 28.5
HPP92_006446 Vanilla planifolia HOM05D003968 ORTHO05D004077 9.1e-08 61.2 200 28.0
CDE02G1122 Ceratophyllum demersum HOM05D003968 ORTHO05D004077 1.2e-07 60.8 144 27.8
MBI01_g34379_MAGBIO Magnolia biondii HOM05D003968 ORTHO05D004077 1.6e-07 60.5 110 40.9
CSS0031909 Camellia sinensis var. sinensis HOM05D003968 ORTHO05D004077 1.0e-06 57.8 213 27.7


User provided reference genes

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