Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C03p74150 Brassica napus HOM05D006174 ORTHO05D007987 7.7e-94 347.1 166 100.0
BolC3t19678H Brassica oleracea HOM05D006174 ORTHO05D007987 2.5e-60 235.7 125 92.8
BcaB05g25044 Brassica carinata HOM05D006174 ORTHO05D007987 1.1e-55 220.3 205 61.0
BcaC03g15734 Brassica carinata HOM05D006174 ORTHO05D007987 1.9e-55 219.5 204 62.7
Thhalv10019853m.g Eutrema salsugineum HOM05D006174 ORTHO05D007987 9.3e-55 217.2 207 60.9
AT1G77405 Arabidopsis thaliana HOM05D006174 ORTHO05D007987 1.2e-54 216.9 207 60.9
AL2G37610 Arabidopsis lyrata HOM05D006174 ORTHO05D007987 3.5e-54 215.3 207 60.9
Carub.0002s2430 Capsella rubella HOM05D006174 ORTHO05D007987 3.5e-54 215.3 206 61.2
A01p18900 Brassica napus HOM05D006174 ORTHO05D007987 6.0e-54 214.5 204 61.8
BraA01t01831Z Brassica rapa HOM05D006174 ORTHO05D007987 6.0e-54 214.5 204 61.8
Sp5g32560 Schrenkiella parvula HOM05D006174 ORTHO05D007987 6.0e-54 214.5 207 59.9
BcaC09g50568 Brassica carinata HOM05D006174 ORTHO05D007987 7.8e-54 214.2 204 61.8
BolC1t02330H Brassica oleracea HOM05D006174 ORTHO05D007987 7.8e-54 214.2 204 61.8
C01p23850 Brassica napus HOM05D006174 ORTHO05D007987 1.0e-53 213.8 204 61.8
CARHR070890 Cardamine hirsuta HOM05D006174 ORTHO05D007987 1.3e-53 213.4 207 60.4
Aa31LG4G7430 Aethionema arabicum HOM05D006174 ORTHO05D007987 6.2e-51 204.5 203 56.2
THA.LOC104800212 Tarenaya hassleriana HOM05D006174 ORTHO05D007987 2.9e-48 195.7 204 53.9
Eucgr.F04334 Eucalyptus grandis HOM05D006174 ORTHO05D007987 8.7e-45 184.1 201 51.7
Actinidia21299 Actinidia chinensis HOM05D006174 ORTHO05D007987 1.1e-44 183.7 201 53.2
Manes.18G080300 Manihot esculenta HOM05D006174 ORTHO05D007987 4.0e-42 175.3 208 50.5
CSS0047085 Camellia sinensis var. sinensis HOM05D006174 ORTHO05D007987 6.9e-42 174.5 203 50.7
vmacro17639 Vaccinium macrocarpon HOM05D006174 ORTHO05D007987 9.0e-42 174.1 203 51.7
ClCG11G015920 Citrullus lanatus HOM05D006174 ORTHO05D007987 2.6e-41 172.6 201 50.2
Rhsim01G0212900 Rhododendron simsii HOM05D006174 ORTHO05D007987 2.6e-41 172.6 201 50.7
MELO3C025482.2 Cucumis melo HOM05D006174 ORTHO05D007987 3.4e-41 172.2 201 50.7
QL09p033206 Quercus lobata HOM05D006174 ORTHO05D007987 7.6e-41 171.0 201 50.7
CiPaw.15G033800 Carya illinoinensis HOM05D006174 ORTHO05D007987 1.3e-40 170.2 202 50.5
CsaV3_5G026160 Cucumis sativus L. HOM05D006174 ORTHO05D007987 1.3e-40 170.2 201 50.2
Gohir.A06G046700 Gossypium hirsutum HOM05D006174 ORTHO05D007987 1.3e-40 170.2 202 50.5
Duzib093G0805 Durio zibethinus HOM05D006174 ORTHO05D007987 1.7e-40 169.9 201 50.7
Gohir.D06G047100 Gossypium hirsutum HOM05D006174 ORTHO05D007987 1.7e-40 169.9 202 50.5
Gorai.010G052600 Gossypium raimondii HOM05D006174 ORTHO05D007987 2.2e-40 169.5 202 50.5
Aqoxy3G03207 Aquilegia oxysepala HOM05D006174 ORTHO05D007987 4.9e-40 168.3 203 49.8
CANSAT56G3042 Cannabis sativa HOM05D006174 ORTHO05D007987 6.4e-40 167.9 202 49.0
PGR044G0496 Punica granatum HOM05D006174 ORTHO05D007987 1.1e-39 167.2 203 47.8
Cpa.g.sc64.130 Carica papaya HOM05D006174 ORTHO05D007987 1.9e-39 166.4 205 49.8
FAN27G1425 Fragaria x ananassa HOM05D006174 ORTHO05D007987 1.9e-39 166.4 200 49.5
PGSC0003DMG400006019 Solanum tuberosum HOM05D006174 ORTHO05D007987 4.2e-39 165.2 203 47.3
Oeu001538.1 Olea europaea HOM05D006174 ORTHO05D007987 5.4e-39 164.9 201 47.8
Sed0011313 Sechium edule HOM05D006174 ORTHO05D007987 5.4e-39 164.9 201 48.8
Sopen08g010060 Solanum pennellii HOM05D006174 ORTHO05D007987 5.4e-39 164.9 202 48.0
FvH4_2g27550 Fragaria vesca HOM05D006174 ORTHO05D007987 7.1e-39 164.5 200 49.0
FAN24G3105 Fragaria x ananassa HOM05D006174 ORTHO05D007987 9.3e-39 164.1 200 49.0
FAN15G2863 Fragaria x ananassa HOM05D006174 ORTHO05D007987 1.2e-38 163.7 200 49.0
Prupe.1G492400 Prunus persica HOM05D006174 ORTHO05D007987 1.2e-38 163.7 205 49.8
RcHm_v2.0_Chr4g0420811 Rosa chinensis HOM05D006174 ORTHO05D007987 1.2e-38 163.7 203 48.8
TAR336G0003 Trochodendron aralioides HOM05D006174 ORTHO05D007987 1.2e-38 163.7 201 49.3
Cfa018561 Carpinus fangiana HOM05D006174 ORTHO05D007987 2.1e-38 162.9 201 49.3
FAN20G1065 Fragaria x ananassa HOM05D006174 ORTHO05D007987 2.1e-38 162.9 200 48.5
Nitab4.5_0000111g0120 Nicotiana tabacum HOM05D006174 ORTHO05D007987 2.1e-38 162.9 205 47.3
PSO832G2909 Papaver somniferum HOM05D006174 ORTHO05D007987 2.7e-38 162.5 201 47.8
Solyc08g029150.3 Solanum lycopersicum HOM05D006174 ORTHO05D007987 2.7e-38 162.5 202 47.5
Ciclev10003743m.g Citrus clementina HOM05D006174 ORTHO05D007987 3.5e-38 162.2 201 47.3
CAN.G1352.3 Capsicum annuum HOM05D006174 ORTHO05D007987 4.6e-38 161.8 199 47.2
Dinv14652 Davidia involucrata HOM05D006174 ORTHO05D007987 4.6e-38 161.8 203 47.8
Nn8g40873 Nelumbo nucifera HOM05D006174 ORTHO05D007987 4.6e-38 161.8 205 45.4
Migut.N03269 Erythranthe guttata HOM05D006174 ORTHO05D007987 6.0e-38 161.4 204 45.6
MBI03_g29283_MAGBIO Magnolia biondii HOM05D006174 ORTHO05D007987 1.3e-37 160.2 201 46.8
MD00G1030400 Malus domestica HOM05D006174 ORTHO05D007987 1.8e-37 159.8 201 49.8
Thecc.08G130300 Theobroma cacao HOM05D006174 ORTHO05D007987 3.0e-37 159.1 201 48.3
ECA232G2008 Erigeron canadensis HOM05D006174 ORTHO05D007987 3.9e-37 158.7 201 47.3
Nitab4.5_0005499g0020 Nicotiana tabacum HOM05D006174 ORTHO05D007987 3.9e-37 158.7 205 46.3
Peaxi162Scf00310g00046 Petunia axillaris HOM05D006174 ORTHO05D007987 3.9e-37 158.7 199 47.2
Ah.12g055480 Amaranthus hybridus HOM05D006174 ORTHO05D007987 6.7e-37 157.9 204 46.6
HanXRQChr11g0326181 Helianthus annuus HOM05D006174 ORTHO05D007987 8.7e-37 157.5 201 44.8
AUR62031996 Chenopodium quinoa HOM05D006174 ORTHO05D007987 1.5e-36 156.8 201 47.3
SalBow2G2495 Salvia bowleyana HOM05D006174 ORTHO05D007987 1.5e-36 156.8 203 43.3
AUR62041512 Chenopodium quinoa HOM05D006174 ORTHO05D007987 1.9e-36 156.4 203 46.8
Lsat_1_v5_gn_4_117540 Lactuca sativa HOM05D006174 ORTHO05D007987 1.9e-36 156.4 201 44.8
Lalb_Chr17g0343621 Lupinus albus HOM05D006174 ORTHO05D007987 1.9e-36 156.4 205 46.3
Atru.chr13.1536 Acer truncatum HOM05D006174 ORTHO05D007987 7.4e-36 154.5 201 44.8
TWI34G0515 Tripterygium wilfordii HOM05D006174 ORTHO05D007987 2.1e-35 152.9 201 46.8
Nn2g10369 Nelumbo nucifera HOM05D006174 ORTHO05D007987 2.8e-35 152.5 201 44.8
ATR0751G052 Amborella trichopoda HOM05D006174 ORTHO05D007987 1.1e-34 150.6 205 44.4
EL10Ac5g12247 Beta vulgaris HOM05D006174 ORTHO05D007987 1.1e-34 150.6 207 44.0
SHI21567 Sapria himalayana HOM05D006174 ORTHO05D007987 1.1e-34 150.6 203 44.3
DCAR_014377 Daucus carota HOM05D006174 ORTHO05D007987 2.4e-34 149.4 194 45.9
SGA_v2.0_scaffold75G24945 Striga asiatica HOM05D006174 ORTHO05D007987 6.9e-34 147.9 206 43.2
arahy.Tifrunner.gnm1.ann1.I3T0B4 Arachis hypogaea HOM05D006174 ORTHO05D007987 9.0e-34 147.5 201 43.8
PGSC0003DMG400014838 Solanum tuberosum HOM05D006174 ORTHO05D007987 1.5e-33 146.7 141 56.0
arahy.Tifrunner.gnm1.ann1.9UW3CC Arachis hypogaea HOM05D006174 ORTHO05D007987 2.6e-33 146.0 201 43.8
CDE02G1325 Ceratophyllum demersum HOM05D001551 ORTHO05D005859 2.6e-33 146.0 197 46.2
Lj1g0022003 Lotus japonicus HOM05D006174 ORTHO05D007987 2.6e-33 146.0 205 42.9
Rhsim08G0141900 Rhododendron simsii HOM05D006174 ORTHO05D007987 4.5e-33 145.2 188 46.8
PGSC0003DMG400029178 Solanum tuberosum HOM05D006174 ORTHO05D007987 4.5e-33 145.2 141 55.3
Sc14g0003020 Simmondsia chinensis HOM05D006174 ORTHO05D007987 5.8e-33 144.8 201 43.8
Nn7g36521 Nelumbo nucifera HOM05D006174 ORTHO05D007987 4.9e-32 141.7 187 46.5
arahy.Tifrunner.gnm1.ann1.DV4E2P Arachis hypogaea HOM05D006174 ORTHO05D007987 1.4e-31 140.2 201 42.3
QL09p033332 Quercus lobata HOM05D006174 ORTHO05D007987 1.4e-31 140.2 157 54.1
TPR.G8620 Trifolium pratense HOM05D006174 ORTHO05D007987 7.1e-31 137.9 210 39.0
Psat1g032920 Pisum sativum HOM05D006174 ORTHO05D007987 1.3e-29 133.7 209 39.2
Medtr3g108060 Medicago truncatula HOM05D006174 ORTHO05D007987 3.0e-29 132.5 211 37.4
HPP92_023560 Vanilla planifolia HOM05D006174 ORTHO05D007987 3.0e-29 132.5 193 42.5
Cc10_g12420 Coffea canephora HOM05D006174 ORTHO05D007987 8.7e-29 131.0 141 51.1
Potri.002G080300 Populus trichocarpa HOM05D006174 ORTHO05D007987 3.3e-28 129.0 206 40.8
GSVIVG01008474001 Vitis vinifera HOM05D006174 ORTHO05D007987 3.3e-28 129.0 178 45.5
Ca_25317_v3 Cicer arietinum L. HOM05D006174 ORTHO05D007987 4.3e-28 128.6 219 37.0
SEGI_34053 Sequoiadendron giganteum HOM05D006174 ORTHO05D007987 5.7e-28 128.3 201 40.8
VMungo1080G1789 Vigna mungo HOM05D006174 ORTHO05D007987 5.7e-28 128.3 199 41.7
HPP92_023516 Vanilla planifolia HOM05D006174 ORTHO05D007987 7.4e-28 127.9 146 50.0
Glyma.19G099200 Glycine max HOM05D006174 ORTHO05D007987 1.6e-27 126.7 201 42.3
Sabra05G0137100 Salix brachista HOM05D006174 ORTHO05D007987 2.8e-27 125.9 204 42.6
Phvul.001G090600 Phaseolus vulgaris HOM05D006174 ORTHO05D007987 3.7e-27 125.6 200 40.0
Actinidia28258 Actinidia chinensis HOM05D006174 ORTHO05D007987 4.0e-26 122.1 119 52.9
EL10Ac3g06597 Beta vulgaris HOM05D006174 ORTHO05D007987 5.3e-26 121.7 136 50.7
BolC2t09481H Brassica oleracea HOM05D007332 ORTHO05D009297 2.9e-24 115.9 129 55.0
Haze_17519 Corylus avellana HOM05D006174 ORTHO05D007987 4.2e-23 112.1 126 50.8
C03p73930 Brassica napus HOM05D000313 ORTHO05D018464 2.3e-21 106.3 55 90.9
C03p73970 Brassica napus HOM05D006174 ORTHO05D027324 2.3e-21 106.3 55 90.9
C03p74000 Brassica napus HOM05D006174 ORTHO05D027324 2.3e-21 106.3 55 90.9
Zm00001eb056380 Zea mays HOM05D006174 ORTHO05D007987 3.7e-19 99.0 140 43.6
CAN.G1352.7 Capsicum annuum HOM05D006174 ORTHO05D007987 6.3e-19 98.2 98 53.1
Os03g0736200 Oryza sativa ssp. japonica HOM05D006174 ORTHO05D007987 6.3e-19 98.2 139 41.7
SGA_v2.0_scaffold154G37185 Striga asiatica HOM05D006174 ORTHO05D007987 2.4e-18 96.3 141 40.4
Glyma.16G052400 Glycine max HOM05D006174 ORTHO05D007987 3.1e-18 95.9 110 48.2
BcaC01g01605 Brassica carinata HOM05D006174 ORTHO05D027324 2.0e-17 93.2 41 100.0
Lj7C346T1 Lonicera japonica HOM05D006174 ORTHO05D007987 1.1e-15 87.4 184 34.8
A01p18890 Brassica napus HOM05D006174 ORTHO05D007987 1.4e-13 80.5 96 53.1
BraA01t01830Z Brassica rapa HOM05D006174 ORTHO05D007987 1.4e-13 80.5 96 53.1
CAN.G1503.13 Capsicum annuum HOM05D006174 ORTHO05D007987 5.1e-13 78.6 127 40.2
Sabra02G0062800 Salix brachista HOM05D006174 ORTHO05D007987 8.2e-11 71.2 94 48.9
COL.COLO4_03953 Corchorus olitorius HOM05D006174 ORTHO05D007987 1.4e-07 60.5 134 34.3
SHI20145 Sapria himalayana HOM05D000424 ORTHO05D002854 9.4e-07 57.8 166 26.5
GSVIVG01030107001 Vitis vinifera HOM05D005764 ORTHO05D006600 6.1e-06 55.1 74 39.2


User provided reference genes

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