Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C03p73060 Brassica napus HOM05D007004 ORTHO05D009040 1.1e-127 459.9 222 100.0
BolC3t19603H Brassica oleracea HOM05D000152 ORTHO05D000609 1.7e-83 313.2 282 63.1
BcaB03g12035 Brassica carinata HOM05D007004 ORTHO05D009040 9.8e-60 234.2 171 71.3
BcaC01g01680 Brassica carinata HOM05D007004 ORTHO05D009040 1.3e-59 233.8 171 70.8
A08p26860 Brassica napus HOM05D007004 ORTHO05D009040 2.2e-59 233.0 171 70.8
C03p73090 Brassica napus HOM05D007004 ORTHO05D009040 1.1e-58 230.7 171 69.6
BolC3t19604H Brassica oleracea HOM05D007004 ORTHO05D009040 1.1e-58 230.7 178 68.0
Sp1g22950 Schrenkiella parvula HOM05D007004 ORTHO05D009040 1.1e-58 230.7 171 69.6
Thhalv10008135m.g Eutrema salsugineum HOM05D007004 ORTHO05D009040 1.8e-58 229.9 174 69.0
BraA08t34631Z Brassica rapa HOM05D007004 ORTHO05D009040 2.4e-58 229.6 178 68.0
AL1G40060 Arabidopsis lyrata HOM05D007004 ORTHO05D009040 4.5e-57 225.3 171 67.3
Carub.0001s2526 Capsella rubella HOM05D007004 ORTHO05D009040 8.6e-56 221.1 180 62.8
CARHR026230 Cardamine hirsuta HOM05D007004 ORTHO05D009040 8.6e-56 221.1 171 66.1
AT1G25290 Arabidopsis thaliana HOM05D007004 ORTHO05D009040 1.1e-55 220.7 171 65.5
BcaC01g01682 Brassica carinata HOM05D007004 ORTHO05D009040 1.5e-55 220.3 250 54.8
Aa31LG7G9200 Aethionema arabicum HOM05D007004 ORTHO05D009040 3.4e-52 209.1 175 60.6
THA.LOC104808114 Tarenaya hassleriana HOM05D007004 ORTHO05D009040 9.2e-50 201.1 173 58.4
Manes.10G129800 Manihot esculenta HOM05D007004 ORTHO05D009040 4.1e-42 175.6 180 50.0
Lj6g0017555 Lotus japonicus HOM05D007004 ORTHO05D009040 4.6e-41 172.2 171 51.5
Thecc.02G039100 Theobroma cacao HOM05D007004 ORTHO05D009040 4.6e-41 172.2 173 50.3
Potri.003G019500 Populus trichocarpa HOM05D007004 ORTHO05D009040 1.7e-40 170.2 173 50.3
Glyma.08G185300 Glycine max HOM05D007004 ORTHO05D009040 2.3e-40 169.9 173 49.7
RcHm_v2.0_Chr7g0222531 Rosa chinensis HOM05D007004 ORTHO05D009040 3.0e-40 169.5 173 48.6
Gohir.A01G178100 Gossypium hirsutum HOM05D007004 ORTHO05D009040 3.9e-40 169.1 174 49.4
TAR381G0113 Trochodendron aralioides HOM05D007004 ORTHO05D009040 3.9e-40 169.1 173 48.0
Ca_01804_v3 Cicer arietinum L. HOM05D007004 ORTHO05D009040 5.0e-40 168.7 165 52.1
Ca_30469_v3 Cicer arietinum L. HOM05D007004 ORTHO05D009040 5.0e-40 168.7 165 52.1
Medtr2g081010 Medicago truncatula HOM05D007004 ORTHO05D009040 5.0e-40 168.7 165 52.1
Sabra03G0011000 Salix brachista HOM05D007004 ORTHO05D009040 6.6e-40 168.3 173 50.3
TPR.G32882 Trifolium pratense HOM05D007004 ORTHO05D009040 6.6e-40 168.3 171 51.5
Atru.chr6.662 Acer truncatum HOM05D007004 ORTHO05D009040 8.6e-40 167.9 173 49.7
COL.COLO4_17874 Corchorus olitorius HOM05D007004 ORTHO05D009040 8.6e-40 167.9 174 48.9
Gohir.D01G168900 Gossypium hirsutum HOM05D007004 ORTHO05D009040 1.1e-39 167.5 165 50.9
Gorai.002G209900 Gossypium raimondii HOM05D007004 ORTHO05D009040 1.1e-39 167.5 165 50.9
Psat5g246720 Pisum sativum HOM05D007004 ORTHO05D009040 1.9e-39 166.8 171 50.3
Duzib132G0688 Durio zibethinus HOM05D007004 ORTHO05D009040 2.5e-39 166.4 173 48.6
Glyma.15G047400 Glycine max HOM05D007004 ORTHO05D009040 3.3e-39 166.0 176 47.7
Aqoxy5G02274 Aquilegia oxysepala HOM05D007004 ORTHO05D009040 4.3e-39 165.6 173 47.4
Cc02_g22440 Coffea canephora HOM05D007004 ORTHO05D009040 5.6e-39 165.2 177 45.2
FAN04G2477 Fragaria x ananassa HOM05D007004 ORTHO05D009040 5.6e-39 165.2 184 46.2
FAN08G1280 Fragaria x ananassa HOM05D003840 ORTHO05D004565 9.5e-39 164.5 176 48.3
FAN13G2493 Fragaria x ananassa HOM05D007004 ORTHO05D009040 9.5e-39 164.5 184 46.7
CSS0010890 Camellia sinensis var. sinensis HOM05D007004 ORTHO05D009040 1.6e-38 163.7 173 48.0
arahy.Tifrunner.gnm1.ann1.CRD7SK Arachis hypogaea HOM05D007004 ORTHO05D009040 2.1e-38 163.3 197 44.2
Haze_01664 Corylus avellana HOM05D007004 ORTHO05D009040 2.8e-38 162.9 186 46.8
QL11p000234 Quercus lobata HOM05D007004 ORTHO05D009040 2.8e-38 162.9 173 46.8
CAN.G1577.12 Capsicum annuum HOM05D007004 ORTHO05D009040 6.2e-38 161.8 175 44.6
Gorai.002G210100 Gossypium raimondii HOM05D007004 ORTHO05D009040 1.1e-37 161.0 162 50.0
PSO170G0041 Papaver somniferum HOM05D007004 ORTHO05D009040 1.1e-37 161.0 173 47.4
MD15G1422300 Malus domestica HOM05D007004 ORTHO05D009040 1.4e-37 160.6 174 46.6
GSVIVG01022970001 Vitis vinifera HOM05D007004 ORTHO05D009040 2.3e-37 159.8 165 48.5
Ciclev10001765m.g Citrus clementina HOM05D007004 ORTHO05D009040 3.1e-37 159.5 165 46.7
FAN18G0881 Fragaria x ananassa HOM05D007004 ORTHO05D009040 3.1e-37 159.5 173 46.8
CSS0040164 Camellia sinensis var. sinensis HOM05D007004 ORTHO05D009040 4.0e-37 159.1 173 47.4
Prupe.1G567600 Prunus persica HOM05D007004 ORTHO05D009040 5.2e-37 158.7 174 46.0
PSO210G5267 Papaver somniferum HOM05D007004 ORTHO05D009040 8.9e-37 157.9 173 46.8
Oeu025684.1 Olea europaea HOM05D007004 ORTHO05D009040 3.4e-36 156.0 171 45.6
Os09g0454100 Oryza sativa ssp. japonica HOM05D007004 ORTHO05D009040 5.8e-36 155.2 165 46.7
PGSC0003DMG400023757 Solanum tuberosum HOM05D007004 ORTHO05D009040 5.8e-36 155.2 175 43.4
Zm00001eb100450 Zea mays HOM05D007004 ORTHO05D009040 5.8e-36 155.2 171 45.6
Peaxi162Scf00011g00359 Petunia axillaris HOM05D007004 ORTHO05D009040 7.5e-36 154.8 173 43.9
MSTRG.16523 Avicennia marina HOM05D007004 ORTHO05D009040 2.2e-35 153.3 171 43.3
PGR142G3820 Punica granatum HOM05D007004 ORTHO05D009040 2.2e-35 153.3 138 50.0
Solyc01g104250.4 Solanum lycopersicum HOM05D007004 ORTHO05D009040 2.2e-35 153.3 175 42.9
Sopen01g046690 Solanum pennellii HOM05D007004 ORTHO05D009040 2.2e-35 153.3 175 42.9
Nitab4.5_0002245g0120 Nicotiana tabacum HOM05D007004 ORTHO05D009040 2.9e-35 152.9 177 41.8
SalBow5G5264 Salvia bowleyana HOM05D007004 ORTHO05D009040 3.7e-35 152.5 171 45.6
CANSAT11G0802 Cannabis sativa HOM05D007004 ORTHO05D009040 6.4e-35 151.8 165 44.8
Lsat_1_v5_gn_5_109341 Lactuca sativa HOM05D007004 ORTHO05D009040 8.3e-35 151.4 165 44.8
Ah.03g137080 Amaranthus hybridus HOM05D007004 ORTHO05D009040 1.1e-34 151.0 139 50.4
ECA234G0800 Erigeron canadensis HOM05D007004 ORTHO05D009040 1.1e-34 151.0 165 46.1
Gohir.A01G178172 Gossypium hirsutum HOM05D007004 ORTHO05D009040 1.1e-34 151.0 165 46.1
Pp3c1_43050 Physcomitrium patens HOM05D007004 ORTHO05D009040 1.4e-34 150.6 170 45.3
SGA_v2.0_scaffold110G31298 Striga asiatica HOM05D007004 ORTHO05D009040 1.4e-34 150.6 183 43.2
DCAR_029255 Daucus carota HOM05D007004 ORTHO05D009040 9.2e-34 147.9 173 42.2
ATR0193G032 Amborella trichopoda HOM05D007004 ORTHO05D009040 1.2e-33 147.5 173 45.7
Migut.B00841 Erythranthe guttata HOM05D007004 ORTHO05D009040 2.7e-33 146.4 174 42.5
EL10Ac6g14073 Beta vulgaris HOM05D007004 ORTHO05D009040 1.7e-32 143.7 165 44.8
Lj9A306G63 Lonicera japonica HOM05D007004 ORTHO05D009040 1.9e-31 140.2 150 46.7
Mapoly0001s0471 Marchantia polymorpha HOM05D007004 ORTHO05D009040 4.3e-31 139.0 177 41.2
Eucgr.I02721 Eucalyptus grandis HOM05D007004 ORTHO05D009040 5.6e-31 138.7 162 42.6
CDE04G0467 Ceratophyllum demersum HOM05D007004 ORTHO05D009040 6.2e-30 135.2 143 48.3
arahy.Tifrunner.gnm1.ann1.Z970KM Arachis hypogaea HOM05D007004 ORTHO05D009040 1.4e-29 134.0 146 47.3
Gohir.A01G178226 Gossypium hirsutum HOM05D007004 ORTHO05D009040 2.6e-28 129.8 144 47.2
Gohir.A01G178262 Gossypium hirsutum HOM05D007004 ORTHO05D009040 2.6e-28 129.8 144 47.2
CARHR026220 Cardamine hirsuta HOM05D007004 ORTHO05D009040 3.4e-28 129.4 94 64.9
Hund12984 Selenicereus undatus HOM05D007004 ORTHO05D009040 3.4e-28 129.4 144 45.8
BraA08t34633Z Brassica rapa HOM05D007004 ORTHO05D024690 2.4e-26 123.2 71 85.9
Nn5g28203 Nelumbo nucifera HOM05D007004 ORTHO05D009040 1.2e-25 120.9 129 47.3
FvH4_5g29570 Fragaria vesca HOM05D007004 ORTHO05D009040 2.3e-24 116.7 141 45.4
CBR_g30610 Chara braunii HOM05D007004 ORTHO05D009040 2.5e-23 113.2 170 38.8
Sed0026986 Sechium edule HOM05D007004 ORTHO05D009040 3.3e-23 112.8 130 46.2
ClCG09G014330 Citrullus lanatus HOM05D007004 ORTHO05D009040 7.3e-23 111.7 129 45.7
AagrBONN_evm.TU.Sc2ySwM_228.3841 Anthoceros agrestis HOM05D007004 ORTHO05D009040 2.1e-22 110.2 130 43.8
Nitab4.5_0002102g0080 Nicotiana tabacum HOM05D007004 ORTHO05D009040 2.1e-22 110.2 129 43.4
Oeu000191.1 Olea europaea HOM05D000082 ORTHO05D000038 1.8e-21 107.1 161 38.5
CiPaw.06G147800 Carya illinoinensis HOM05D007004 ORTHO05D009040 4.0e-21 105.9 113 50.4
MBI03_g33023_MAGBIO Magnolia biondii HOM05D007294 ORTHO05D009040 7.6e-20 101.7 113 46.0
SMO157G0006 Selaginella moellendorffii HOM05D007004 ORTHO05D009040 2.9e-19 99.8 136 37.5
Dinv19362 Davidia involucrata HOM05D007004 ORTHO05D009040 1.4e-18 97.4 113 44.2
Cpa.g.sc113.65 Carica papaya HOM05D007004 ORTHO05D009040 7.8e-17 91.7 97 44.3
Cfa005527 Carpinus fangiana HOM05D000082 ORTHO05D000038 1.0e-16 91.3 109 42.2
vmacro19897 Vaccinium macrocarpon HOM05D007004 ORTHO05D009040 1.7e-16 90.5 60 68.3
MCO05G317 Micromonas commoda HOM05D007004 ORTHO05D009040 6.6e-16 88.6 145 32.4
TWI14G0893 Tripterygium wilfordii HOM05D007004 ORTHO05D009040 8.7e-16 88.2 59 64.4
Lj4g0009262 Lotus japonicus HOM05D007004 ORTHO05D009040 2.5e-15 86.7 141 39.0
Cre16.g690900 Chlamydomonas reinhardtii HOM05D007004 ORTHO05D009040 4.3e-15 85.9 170 31.2
SEGI_31453 Sequoiadendron giganteum HOM05D007004 ORTHO05D000002 9.6e-15 84.7 107 42.1
Lalb_Chr18g0060871 Lupinus albus HOM05D007004 ORTHO05D009040 2.8e-14 83.2 55 65.5
Actinidia26143 Actinidia chinensis HOM05D000082 ORTHO05D000038 5.3e-13 79.0 53 64.2
PRCOL_00004536 Prasinoderma coloniale HOM05D000659 ORTHO05D009040 9.0e-13 78.2 190 33.7
AUR62014269 Chenopodium quinoa HOM05D007004 ORTHO05D009040 2.6e-12 76.6 60 60.0
SMO139G0001 Selaginella moellendorffii HOM05D007004 ORTHO05D009040 2.1e-09 67.0 86 37.2
SEGI_10953 Sequoiadendron giganteum HOM05D007004 ORTHO05D009040 1.1e-07 61.2 58 43.1
Gorai.002G210700 Gossypium raimondii HOM05D042066 ORTHO05D024690 1.3e-06 57.8 68 42.6
A09p24920 Brassica napus HOM05D001206 ORTHO05D005935 4.8e-06 55.8 67 50.7
BraA09t38080Z Brassica rapa HOM05D001206 ORTHO05D005935 4.8e-06 55.8 67 50.7
Cre12.g526700 Chlamydomonas reinhardtii HOM05D007004 ORTHO05D000002 6.2e-06 55.5 155 27.1


User provided reference genes

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